CmoCh04G001950.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G001950.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Regulator of chromosome condensation (RCC1) family protein
Location	Cmo_Chr04 : 976087 .. 976800 (+)
Sequence length	504

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCCTAATGTCTTCAAAGTTTCAGATATGGGACAGGTCTGGGGTTGGGGCTATGGTGGAGAAGGACAGCTAGGTTTGGGTTCCCGCATACGTATGGTTTCCTCTCCACATCCTATACCTTGCATCGAGTCACCTTCTTTTGGCAAAGATAGAGCCATGGCTCTTGCTCGAGGAAGTGCAAGTTTAGAGGGTCACGGTAGTAGAATTCCAGGAAGCTATGTGAAGGGAATTGCTTGTGGAGGACGTCATAGTGCAGCAGTTACAGGTTTTGTGATGTTTCTTTTCCTGACATAAAGTAGCTGCATAAACTTTCTGTTGCTTCATCAGTTGCTGTTTCTTATGAAATATGATGCTTGATTAACCTATACATCCTGTTTGTCATATTGTCCACTTTAAATGATAAGCTTCATGTATTTGATTTTTCTCTGATCTTTTATGCCACAGATGCTGGAGCGCTGCTAACATTCGGTTGGGGACTGTATGGACAGGTGAATTTATCATGTTAATCACGTGCTTCATTCCGTTTTAGTACTTTCCTCCCGCCGTCTTCATTCCATTCCATCACTTTTCATTGTGAGAATTTCCTTTTTGTTACATGATCATGCGTACTTCATTAGCGGTAAGACAATATGTGGGCATCTTTCTTGTGCTGGTTGTTCATCGCCTAGCCTTTTCCACCGTGAAGTACGCTATTACAATTTGGTGTGCTAG

mRNA sequence

ATGCACCCTAATGTCTTCAAAGTTTCAGATATGGGACAGGTCTGGGGTTGGGGCTATGGTGGAGAAGGACAGCTAGGTTTGGGTTCCCGCATACGTATGGTTTCCTCTCCACATCCTATACCTTGCATCGAGTCACCTTCTTTTGGCAAAGATAGAGCCATGGCTCTTGCTCGAGGAAGTGCAAGTTTAGAGGGTCACGGTAGTAGAATTCCAGGAAGCTATGTGAAGGGAATTGCTTGTGGAGGACGTCATAGTGCAGCAGTTACAGGTTTTGTGATATGCTGGAGCGCTGCTAACATTCGGTTGGGGACTGTATGGACAGTACTTTCCTCCCGCCGTCTTCATTCCATTCCATCACTTTTCATTGTGAGAATTTCCTTTTTGTTACATGATCATGCGTACTTCATTAGCGGTAAGACAATATGTGGGCATCTTTCTTGTGCTGGTTGTTCATCGCCTAGCCTTTTCCACCGTGAAGTACGCTATTACAATTTGGTGTGCTAG

Coding sequence (CDS)

ATGCACCCTAATGTCTTCAAAGTTTCAGATATGGGACAGGTCTGGGGTTGGGGCTATGGTGGAGAAGGACAGCTAGGTTTGGGTTCCCGCATACGTATGGTTTCCTCTCCACATCCTATACCTTGCATCGAGTCACCTTCTTTTGGCAAAGATAGAGCCATGGCTCTTGCTCGAGGAAGTGCAAGTTTAGAGGGTCACGGTAGTAGAATTCCAGGAAGCTATGTGAAGGGAATTGCTTGTGGAGGACGTCATAGTGCAGCAGTTACAGGTTTTGTGATATGCTGGAGCGCTGCTAACATTCGGTTGGGGACTGTATGGACAGTACTTTCCTCCCGCCGTCTTCATTCCATTCCATCACTTTTCATTGTGAGAATTTCCTTTTTGTTACATGATCATGCGTACTTCATTAGCGGTAAGACAATATGTGGGCATCTTTCTTGTGCTGGTTGTTCATCGCCTAGCCTTTTCCACCGTGAAGTACGCTATTACAATTTGGTGTGCTAG

Homology

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BLAST of CmoCh04G001950.1 vs. TrEMBL
Match: A0A0A0KLQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G184310 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.6e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSASLEG G
Sbjct: 249 LSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSASLEGQG 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
           SRIPGSYVKGIACGGRHSAAVT
Sbjct: 309 SRIPGSYVKGIACGGRHSAAVT 330

[Close]

BLAST of CmoCh04G001950.1 vs. TrEMBL
Match: M1CLF1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027194 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD+GQVWGWGYGGEGQLGLGSRIRMVSSPHP+PCI+S S  KDRAM L+ G    EG G
Sbjct: 232 LSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPVPCIDSSSLRKDRAMGLSHGCPGSEGQG 291

Query: 68  SRIPGSYVKGIACGGRHSAAVTGFVICWSAANIRLGTVWTVLS 111
            R+PG+Y+K IACGGRHSA +TG   CWS  N  LG VWTV S
Sbjct: 292 LRVPGNYIKRIACGGRHSAVITG--RCWSTVNFWLGIVWTVWS 332

[Close]

BLAST of CmoCh04G001950.1 vs. TrEMBL
Match: F6HNU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02280 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-31
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD+GQVWGWGYGGEGQLGLGSRIRMVSSPHP+PC+ES S+GK+R+ ALARG+ S EG  
Sbjct: 242 LSDVGQVWGWGYGGEGQLGLGSRIRMVSSPHPVPCVESSSYGKERSSALARGNVSTEGQS 301

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
            R+PGSYVK IACGGRHSA +T
Sbjct: 302 LRVPGSYVKWIACGGRHSAVIT 323

[Close]

BLAST of CmoCh04G001950.1 vs. TrEMBL
Match: A0A067FSS1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0117752mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-31
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD+GQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES S+GKDR+ AL+RGS + EG G
Sbjct: 174 LSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES-SYGKDRSAALSRGSVNSEGPG 233

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
            R+PG+YVKGIACGGRHSA +T
Sbjct: 234 FRVPGNYVKGIACGGRHSAVIT 254

[Close]

BLAST of CmoCh04G001950.1 vs. TrEMBL
Match: A0A0B0PG70_GOSAR (RCC1 domain-containing 1 OS=Gossypium arboreum GN=F383_10353 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD GQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIE  S GKDRA AL+RGS S E   
Sbjct: 179 LSDTGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIEPSSLGKDRASALSRGSLSSERQS 238

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
            R+PGSYVKGIACGGRHSA +T
Sbjct: 239 FRVPGSYVKGIACGGRHSAVIT 260

[Close]

BLAST of CmoCh04G001950.1 vs. TAIR10
Match: AT3G53830.1 (AT3G53830.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALAR-GSASLEGH 67
           +SD+GQ+WGWGYGGEGQLGLGSRI+MVSSPH IPC+ES   GK+R+  L + G+ +    
Sbjct: 229 LSDLGQIWGWGYGGEGQLGLGSRIKMVSSPHLIPCLESIGSGKERSFILHQGGTTTTSAQ 288

Query: 68  GSRIPGSYVKGIACGGRHSAAVT 90
            SR PG Y+K I+CGGRHSAA+T
Sbjct: 289 ASREPGQYIKAISCGGRHSAAIT 311

[Close]

BLAST of CmoCh04G001950.1 vs. TAIR10
Match: AT3G55580.1 (AT3G55580.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-25
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD+GQVWGWGYGGEGQLGLGSR+R+VSSPHPIPCIE  S+GK  +  +   S    G  
Sbjct: 249 LSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCG-- 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
            R+ GSYVK IACGGRHSA +T
Sbjct: 309 -RVLGSYVKKIACGGRHSAVIT 327

[Close]

BLAST of CmoCh04G001950.1 vs. NCBI nr
Match: gi|778701093|ref|XP_011654963.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 7.3e-38
Identity = 79/88 (89.77%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 2   HPNVFKVSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSA 61
           H     VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSA
Sbjct: 245 HTLALSVSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSA 304

Query: 62  SLEGHGSRIPGSYVKGIACGGRHSAAVT 90
           SLEG GSRIPGSYVKGIACGGRHSAAVT
Sbjct: 305 SLEGQGSRIPGSYVKGIACGGRHSAAVT 332

[Close]

BLAST of CmoCh04G001950.1 vs. NCBI nr
Match: gi|778701104|ref|XP_011654966.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X4 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 7.3e-38
Identity = 79/88 (89.77%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 2   HPNVFKVSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSA 61
           H     VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSA
Sbjct: 245 HTLALSVSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSA 304

Query: 62  SLEGHGSRIPGSYVKGIACGGRHSAAVT 90
           SLEG GSRIPGSYVKGIACGGRHSAAVT
Sbjct: 305 SLEGQGSRIPGSYVKGIACGGRHSAAVT 332

[Close]

BLAST of CmoCh04G001950.1 vs. NCBI nr
Match: gi|449465846|ref|XP_004150638.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X5 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 8.1e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSASLEG G
Sbjct: 249 LSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSASLEGQG 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
           SRIPGSYVKGIACGGRHSAAVT
Sbjct: 309 SRIPGSYVKGIACGGRHSAAVT 330

[Close]

BLAST of CmoCh04G001950.1 vs. NCBI nr
Match: gi|778701097|ref|XP_011654964.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 8.1e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSASLEG G
Sbjct: 249 LSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSASLEGQG 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
           SRIPGSYVKGIACGGRHSAAVT
Sbjct: 309 SRIPGSYVKGIACGGRHSAAVT 330

[Close]

BLAST of CmoCh04G001950.1 vs. NCBI nr
Match: gi|659123522|ref|XP_008461709.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSAS EG G
Sbjct: 249 LSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSASFEGQG 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
           SRIPGSYVKGIACGGRHSAAVT
Sbjct: 309 SRIPGSYVKGIACGGRHSAAVT 330

The following BLAST results are available for this feature:

BLAST of CmoCh04G001950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G001950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ7_CUCSA	5.6e-37	93.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G184310 PE=4 SV=1	[more]
M1CLF1_SOLTU	1.2e-34	69.90	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027194 PE=4 SV=1	[more]
F6HNU1_VITVI	4.6e-31	76.83	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02280 PE=4 SV=...	[more]
A0A067FSS1_CITSI	4.6e-31	80.49	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0117752mg PE=4 ...	[more]
A0A0B0PG70_GOSAR	1.0e-30	80.49	RCC1 domain-containing 1 OS=Gossypium arboreum GN=F383_10353 PE=4 SV=1	[more]

BLAST of CmoCh04G001950.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53830.1	1.1e-26	63.86	Regulator of chromosome condensation (RCC1) family protein	[more]
AT3G55580.1	1.5e-25	65.85	Regulator of chromosome condensation (RCC1) family protein	[more]

BLAST of CmoCh04G001950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701093\|ref\|XP_011654963.1\|	7.3e-38	89.77	PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis sativus]	[more]
gi\|778701104\|ref\|XP_011654966.1\|	7.3e-38	89.77	PREDICTED: ultraviolet-B receptor UVR8 isoform X4 [Cucumis sativus]	[more]
gi\|449465846\|ref\|XP_004150638.1\|	8.1e-37	93.90	PREDICTED: ultraviolet-B receptor UVR8 isoform X5 [Cucumis sativus]	[more]
gi\|778701097\|ref\|XP_011654964.1\|	8.1e-37	93.90	PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis sativus]	[more]
gi\|659123522\|ref\|XP_008461709.1\|	2.4e-36	92.68	PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000408	Reg_chr_condens
IPR009091	RCC1/BLIP-II

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G001950	CmoCh04G001950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001950.1	CmoCh04G001950.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001950.1.exon.1	CmoCh04G001950.1.exon.1	exon
CmoCh04G001950.1.exon.2	CmoCh04G001950.1.exon.2	exon
CmoCh04G001950.1.exon.3	CmoCh04G001950.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001950.1.CDS.1	CmoCh04G001950.1.CDS.1	CDS
CmoCh04G001950.1.CDS.2	CmoCh04G001950.1.CDS.2	CDS
CmoCh04G001950.1.CDS.3	CmoCh04G001950.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000408	Regulator of chromosome condensation, RCC1	PFAM	PF00415	RCC1	coord: 12..88 score: 7.
IPR000408	Regulator of chromosome condensation, RCC1	PROFILE	PS50012	RCC1_3	coord: 12..91 score: 12
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	GENE3D	G3DSA:2.130.10.30		coord: 9..104 score: 1.4
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	unknown	SSF50985	RCC1/BLIP-II	coord: 10..149 score: 1.7
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 9..89 score: 3.6
None	No IPR available	PANTHER	PTHR22870:SF204	REGULATOR OF CHROMOSOME CONDENSATION REPEAT-CONTAINING PROTEIN	coord: 9..89 score: 3.6