CmoCh04G001950 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G001950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRegulator of chromosome condensation (RCC1) family protein
LocationCmo_Chr04 : 976087 .. 976800 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCCTAATGTCTTCAAAGTTTCAGATATGGGACAGGTCTGGGGTTGGGGCTATGGTGGAGAAGGACAGCTAGGTTTGGGTTCCCGCATACGTATGGTTTCCTCTCCACATCCTATACCTTGCATCGAGTCACCTTCTTTTGGCAAAGATAGAGCCATGGCTCTTGCTCGAGGAAGTGCAAGTTTAGAGGGTCACGGTAGTAGAATTCCAGGAAGCTATGTGAAGGGAATTGCTTGTGGAGGACGTCATAGTGCAGCAGTTACAGGTTTTGTGATGTTTCTTTTCCTGACATAAAGTAGCTGCATAAACTTTCTGTTGCTTCATCAGTTGCTGTTTCTTATGAAATATGATGCTTGATTAACCTATACATCCTGTTTGTCATATTGTCCACTTTAAATGATAAGCTTCATGTATTTGATTTTTCTCTGATCTTTTATGCCACAGATGCTGGAGCGCTGCTAACATTCGGTTGGGGACTGTATGGACAGGTGAATTTATCATGTTAATCACGTGCTTCATTCCGTTTTAGTACTTTCCTCCCGCCGTCTTCATTCCATTCCATCACTTTTCATTGTGAGAATTTCCTTTTTGTTACATGATCATGCGTACTTCATTAGCGGTAAGACAATATGTGGGCATCTTTCTTGTGCTGGTTGTTCATCGCCTAGCCTTTTCCACCGTGAAGTACGCTATTACAATTTGGTGTGCTAG

mRNA sequence

ATGCACCCTAATGTCTTCAAAGTTTCAGATATGGGACAGGTCTGGGGTTGGGGCTATGGTGGAGAAGGACAGCTAGGTTTGGGTTCCCGCATACGTATGGTTTCCTCTCCACATCCTATACCTTGCATCGAGTCACCTTCTTTTGGCAAAGATAGAGCCATGGCTCTTGCTCGAGGAAGTGCAAGTTTAGAGGGTCACGGTAGTAGAATTCCAGGAAGCTATGTGAAGGGAATTGCTTGTGGAGGACGTCATAGTGCAGCAGTTACAGGTTTTGTGATATGCTGGAGCGCTGCTAACATTCGGTTGGGGACTGTATGGACAGTACTTTCCTCCCGCCGTCTTCATTCCATTCCATCACTTTTCATTGTGAGAATTTCCTTTTTGTTACATGATCATGCGTACTTCATTAGCGGTAAGACAATATGTGGGCATCTTTCTTGTGCTGGTTGTTCATCGCCTAGCCTTTTCCACCGTGAAGTACGCTATTACAATTTGGTGTGCTAG

Coding sequence (CDS)

ATGCACCCTAATGTCTTCAAAGTTTCAGATATGGGACAGGTCTGGGGTTGGGGCTATGGTGGAGAAGGACAGCTAGGTTTGGGTTCCCGCATACGTATGGTTTCCTCTCCACATCCTATACCTTGCATCGAGTCACCTTCTTTTGGCAAAGATAGAGCCATGGCTCTTGCTCGAGGAAGTGCAAGTTTAGAGGGTCACGGTAGTAGAATTCCAGGAAGCTATGTGAAGGGAATTGCTTGTGGAGGACGTCATAGTGCAGCAGTTACAGGTTTTGTGATATGCTGGAGCGCTGCTAACATTCGGTTGGGGACTGTATGGACAGTACTTTCCTCCCGCCGTCTTCATTCCATTCCATCACTTTTCATTGTGAGAATTTCCTTTTTGTTACATGATCATGCGTACTTCATTAGCGGTAAGACAATATGTGGGCATCTTTCTTGTGCTGGTTGTTCATCGCCTAGCCTTTTCCACCGTGAAGTACGCTATTACAATTTGGTGTGCTAG
Homology
[Close]
BLAST of CmoCh04G001950 vs. TrEMBL
Match: A0A0A0KLQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G184310 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.6e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSASLEG G
Sbjct: 249 LSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSASLEGQG 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
           SRIPGSYVKGIACGGRHSAAVT
Sbjct: 309 SRIPGSYVKGIACGGRHSAAVT 330

[Close]
BLAST of CmoCh04G001950 vs. TrEMBL
Match: M1CLF1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027194 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD+GQVWGWGYGGEGQLGLGSRIRMVSSPHP+PCI+S S  KDRAM L+ G    EG G
Sbjct: 232 LSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPVPCIDSSSLRKDRAMGLSHGCPGSEGQG 291

Query: 68  SRIPGSYVKGIACGGRHSAAVTGFVICWSAANIRLGTVWTVLS 111
            R+PG+Y+K IACGGRHSA +TG   CWS  N  LG VWTV S
Sbjct: 292 LRVPGNYIKRIACGGRHSAVITG--RCWSTVNFWLGIVWTVWS 332

[Close]
BLAST of CmoCh04G001950 vs. TrEMBL
Match: F6HNU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02280 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-31
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD+GQVWGWGYGGEGQLGLGSRIRMVSSPHP+PC+ES S+GK+R+ ALARG+ S EG  
Sbjct: 242 LSDVGQVWGWGYGGEGQLGLGSRIRMVSSPHPVPCVESSSYGKERSSALARGNVSTEGQS 301

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
            R+PGSYVK IACGGRHSA +T
Sbjct: 302 LRVPGSYVKWIACGGRHSAVIT 323

[Close]
BLAST of CmoCh04G001950 vs. TrEMBL
Match: A0A067FSS1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0117752mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-31
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD+GQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES S+GKDR+ AL+RGS + EG G
Sbjct: 174 LSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES-SYGKDRSAALSRGSVNSEGPG 233

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
            R+PG+YVKGIACGGRHSA +T
Sbjct: 234 FRVPGNYVKGIACGGRHSAVIT 254

[Close]
BLAST of CmoCh04G001950 vs. TrEMBL
Match: A0A0B0PG70_GOSAR (RCC1 domain-containing 1 OS=Gossypium arboreum GN=F383_10353 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD GQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIE  S GKDRA AL+RGS S E   
Sbjct: 179 LSDTGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIEPSSLGKDRASALSRGSLSSERQS 238

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
            R+PGSYVKGIACGGRHSA +T
Sbjct: 239 FRVPGSYVKGIACGGRHSAVIT 260

[Close]
BLAST of CmoCh04G001950 vs. TAIR10
Match: AT3G53830.1 (AT3G53830.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALAR-GSASLEGH 67
           +SD+GQ+WGWGYGGEGQLGLGSRI+MVSSPH IPC+ES   GK+R+  L + G+ +    
Sbjct: 229 LSDLGQIWGWGYGGEGQLGLGSRIKMVSSPHLIPCLESIGSGKERSFILHQGGTTTTSAQ 288

Query: 68  GSRIPGSYVKGIACGGRHSAAVT 90
            SR PG Y+K I+CGGRHSAA+T
Sbjct: 289 ASREPGQYIKAISCGGRHSAAIT 311

[Close]
BLAST of CmoCh04G001950 vs. TAIR10
Match: AT3G55580.1 (AT3G55580.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-25
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SD+GQVWGWGYGGEGQLGLGSR+R+VSSPHPIPCIE  S+GK  +  +   S    G  
Sbjct: 249 LSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCG-- 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
            R+ GSYVK IACGGRHSA +T
Sbjct: 309 -RVLGSYVKKIACGGRHSAVIT 327

[Close]
BLAST of CmoCh04G001950 vs. NCBI nr
Match: gi|778701093|ref|XP_011654963.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 7.3e-38
Identity = 79/88 (89.77%), Postives = 80/88 (90.91%), Query Frame = 1 

Query: 2   HPNVFKVSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSA 61
           H     VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSA
Sbjct: 245 HTLALSVSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSA 304

Query: 62  SLEGHGSRIPGSYVKGIACGGRHSAAVT 90
           SLEG GSRIPGSYVKGIACGGRHSAAVT
Sbjct: 305 SLEGQGSRIPGSYVKGIACGGRHSAAVT 332

[Close]
BLAST of CmoCh04G001950 vs. NCBI nr
Match: gi|778701104|ref|XP_011654966.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X4 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 7.3e-38
Identity = 79/88 (89.77%), Postives = 80/88 (90.91%), Query Frame = 1 

Query: 2   HPNVFKVSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSA 61
           H     VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSA
Sbjct: 245 HTLALSVSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSA 304

Query: 62  SLEGHGSRIPGSYVKGIACGGRHSAAVT 90
           SLEG GSRIPGSYVKGIACGGRHSAAVT
Sbjct: 305 SLEGQGSRIPGSYVKGIACGGRHSAAVT 332

[Close]
BLAST of CmoCh04G001950 vs. NCBI nr
Match: gi|449465846|ref|XP_004150638.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X5 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 8.1e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSASLEG G
Sbjct: 249 LSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSASLEGQG 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
           SRIPGSYVKGIACGGRHSAAVT
Sbjct: 309 SRIPGSYVKGIACGGRHSAAVT 330

[Close]
BLAST of CmoCh04G001950 vs. NCBI nr
Match: gi|778701097|ref|XP_011654964.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 8.1e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSASLEG G
Sbjct: 249 LSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSASLEGQG 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
           SRIPGSYVKGIACGGRHSAAVT
Sbjct: 309 SRIPGSYVKGIACGGRHSAAVT 330

[Close]
BLAST of CmoCh04G001950 vs. NCBI nr
Match: gi|659123522|ref|XP_008461709.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 1 

Query: 8   VSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESPSFGKDRAMALARGSASLEGHG 67
           +SDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIES SFGKDR+ ALARGSAS EG G
Sbjct: 249 LSDMGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSSFGKDRSAALARGSASFEGQG 308

Query: 68  SRIPGSYVKGIACGGRHSAAVT 90
           SRIPGSYVKGIACGGRHSAAVT
Sbjct: 309 SRIPGSYVKGIACGGRHSAAVT 330

The following BLAST results are available for this feature:
BLAST of CmoCh04G001950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G001950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLQ7_CUCSA5.6e-3793.90Uncharacterized protein OS=Cucumis sativus GN=Csa_5G184310 PE=4 SV=1[more]
M1CLF1_SOLTU1.2e-3469.90Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027194 PE=4 SV=1[more]
F6HNU1_VITVI4.6e-3176.83Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02280 PE=4 SV=... [more]
A0A067FSS1_CITSI4.6e-3180.49Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0117752mg PE=4 ... [more]
A0A0B0PG70_GOSAR1.0e-3080.49RCC1 domain-containing 1 OS=Gossypium arboreum GN=F383_10353 PE=4 SV=1[more]
BLAST of CmoCh04G001950 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G53830.11.1e-2663.86 Regulator of chromosome condensation (RCC1) family protein[more]
AT3G55580.11.5e-2565.85 Regulator of chromosome condensation (RCC1) family protein[more]
BLAST of CmoCh04G001950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778701093|ref|XP_011654963.1|7.3e-3889.77PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis sativus][more]
gi|778701104|ref|XP_011654966.1|7.3e-3889.77PREDICTED: ultraviolet-B receptor UVR8 isoform X4 [Cucumis sativus][more]
gi|449465846|ref|XP_004150638.1|8.1e-3793.90PREDICTED: ultraviolet-B receptor UVR8 isoform X5 [Cucumis sativus][more]
gi|778701097|ref|XP_011654964.1|8.1e-3793.90PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis sativus][more]
gi|659123522|ref|XP_008461709.1|2.4e-3692.68PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G001950.1CmoCh04G001950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 12..88
score: 7.
IPR000408Regulator of chromosome condensation, RCC1PROFILEPS50012RCC1_3coord: 12..91
score: 12
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3DG3DSA:2.130.10.30coord: 9..104
score: 1.4
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIunknownSSF50985RCC1/BLIP-IIcoord: 10..149
score: 1.7
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 9..89
score: 3.6
NoneNo IPR availablePANTHERPTHR22870:SF204REGULATOR OF CHROMOSOME CONDENSATION REPEAT-CONTAINING PROTEINcoord: 9..89
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G001950Lsi01G014510Bottle gourd (USVL1VR-Ls)cmolsiB630
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G001950Cucurbita moschata (Rifu)cmocmoB267
CmoCh04G001950Cucurbita moschata (Rifu)cmocmoB448
CmoCh04G001950Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G001950Cucurbita moschata (Rifu)cmocmoB478
CmoCh04G001950Cucumber (Gy14) v1cgycmoB0373
CmoCh04G001950Cucumber (Gy14) v1cgycmoB0474
CmoCh04G001950Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G001950Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G001950Wild cucumber (PI 183967)cmocpiB747
CmoCh04G001950Wild cucumber (PI 183967)cmocpiB776
CmoCh04G001950Cucumber (Chinese Long) v2cmocuB737
CmoCh04G001950Cucumber (Chinese Long) v2cmocuB767
CmoCh04G001950Melon (DHL92) v3.5.1cmomeB646
CmoCh04G001950Melon (DHL92) v3.5.1cmomeB676
CmoCh04G001950Watermelon (Charleston Gray)cmowcgB630
CmoCh04G001950Watermelon (Charleston Gray)cmowcgB676
CmoCh04G001950Watermelon (97103) v1cmowmB673
CmoCh04G001950Watermelon (97103) v1cmowmB737
CmoCh04G001950Cucurbita pepo (Zucchini)cmocpeB653
CmoCh04G001950Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G001950Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G001950Bottle gourd (USVL1VR-Ls)cmolsiB649
CmoCh04G001950Bottle gourd (USVL1VR-Ls)cmolsiB670
CmoCh04G001950Cucumber (Gy14) v2cgybcmoB522
CmoCh04G001950Cucumber (Gy14) v2cgybcmoB652
CmoCh04G001950Cucumber (Gy14) v2cgybcmoB823
CmoCh04G001950Melon (DHL92) v3.6.1cmomedB733
CmoCh04G001950Melon (DHL92) v3.6.1cmomedB798
CmoCh04G001950Silver-seed gourdcarcmoB0123
CmoCh04G001950Silver-seed gourdcarcmoB0372
CmoCh04G001950Silver-seed gourdcarcmoB0924
CmoCh04G001950Silver-seed gourdcarcmoB1247
CmoCh04G001950Cucumber (Chinese Long) v3cmocucB0837
CmoCh04G001950Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G001950Cucumber (Chinese Long) v3cmocucB0906
CmoCh04G001950Watermelon (97103) v2cmowmbB722
CmoCh04G001950Watermelon (97103) v2cmowmbB755
CmoCh04G001950Wax gourdcmowgoB0837
CmoCh04G001950Wax gourdcmowgoB0864