CmoCh04G001900.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G001900.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 953762 .. 954177 (-)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTATCTCATCCTTGCATTTCCGGTATTTCTAATTCTTCATTTCTAGACACTTCCATCGTTTTTGTTTATGAACCCACTGGAGTAATCTCCCTGACCCTTCATTTTGATTTTTGATTTGAGGGTTTAAGGAACTGCAGTATTTGGGATTTTGGGTCTGTTGGGATTTTTCCTCATCGATTTCTTTTTCTTCCTCATATGCAGAGAAAAAATCTGGGTGGATGAAATGGTTGAGCAAAATTGTCCGGCCAGGACCCAACAGGGGAGGCGGCGGCAGTGGCAGTGGCGGCAGCCCTCCACAGCAGCTTCTTGGTGATCAGGAGAACATAGTCTGGCGAGCTCCGGCTAGATCAACGGTCAACTTCTGTTTTTCCTTCCCCCACCTTCTATTGAATTTGATCTTCTTTGATTAG

mRNA sequence

ATGGATCTATCTCATCCTTGCATTTCCGAGAAAAAATCTGGGTGGATGAAATGGTTGAGCAAAATTGTCCGGCCAGGACCCAACAGGGGAGGCGGCGGCAGTGGCAGTGGCGGCAGCCCTCCACAGCAGCTTCTTGGTGATCAGGAGAACATAGTCTGGCGAGCTCCGGCTAGATCAACGGTCAACTTCTGTTTTTCCTTCCCCCACCTTCTATTGAATTTGATCTTCTTTGATTAG

Coding sequence (CDS)

ATGGATCTATCTCATCCTTGCATTTCCGAGAAAAAATCTGGGTGGATGAAATGGTTGAGCAAAATTGTCCGGCCAGGACCCAACAGGGGAGGCGGCGGCAGTGGCAGTGGCGGCAGCCCTCCACAGCAGCTTCTTGGTGATCAGGAGAACATAGTCTGGCGAGCTCCGGCTAGATCAACGGTCAACTTCTGTTTTTCCTTCCCCCACCTTCTATTGAATTTGATCTTCTTTGATTAG

Homology

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BLAST of CmoCh04G001900.1 vs. TrEMBL
Match: A0A0A0KLY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187320 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-10
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 16 MKWLSKIVRPGPNRGGGGSG--------SGGSPPQQLLGDQENIVWRAPARST 61
          MKWLS+I R G NRGGGG G        SGG  PQQLLGDQEN+VWRAPARS+
Sbjct: 1  MKWLSRIFRSGGNRGGGGGGGGSGGSGGSGGRHPQQLLGDQENMVWRAPARSS 53

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BLAST of CmoCh04G001900.1 vs. TrEMBL
Match: B9SE23_RICCO (Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_1482680 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVRPGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PCI E+KS +MKWLSK+ + GP RG      GGS   QLLG++  + WRAPARS
Sbjct: 17 ISNPCIYERKSRFMKWLSKLFKGGPTRG------GGSRHPQLLGEENMVSWRAPARS 67

[Close]

BLAST of CmoCh04G001900.1 vs. TrEMBL
Match: A0A067FPA7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0105812mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-07
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVR-PGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PC+ E+KS +MKWLSK+ +  G NRGGGG  + G    Q LG +E++VW AP RS
Sbjct: 11 ISNPCVYERKSRFMKWLSKLFKSTGSNRGGGGGSTSGRHHPQFLG-EESMVWPAPRRS 67

[Close]

BLAST of CmoCh04G001900.1 vs. TrEMBL
Match: V4TBC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031291mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-07
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVR-PGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PC+ E+KS +MKWLSK+ +  G NRGGGG  + G    Q LG +E++VW AP RS
Sbjct: 11 ISNPCVYERKSRFMKWLSKLFKSTGSNRGGGGGSTSGRHHPQFLG-EESMVWPAPRRS 67

[Close]

BLAST of CmoCh04G001900.1 vs. TrEMBL
Match: B9HT51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20500g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 3  LSHPCI------------SEKKSGWMKWLSKIVRPGPNRGGGGSGSGGSPPQQLLGDQEN 60
          +S+PCI            +E+KS +MKWL K+ + G NRGG   G GG    Q+LG +EN
Sbjct: 11 ISNPCIYGMFSGDFVSSYAERKSRFMKWLGKLFKSGSNRGGARGGVGGRAHPQILG-EEN 70

[Close]

BLAST of CmoCh04G001900.1 vs. NCBI nr
Match: gi|778701116|ref|XP_011654967.1| (PREDICTED: protein DA1-related 2 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 48/75 (64.00%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 3  LSHPCIS---------EKKSGWMKWLSKIVRPGPNRGGGG--------SGSGGSPPQQLL 61
          LS PCIS         EKKSGWMKWLS+I R G NRGGGG         GSGG  PQQLL
Sbjct: 9  LSQPCISGDFSSSSYAEKKSGWMKWLSRIFRSGGNRGGGGGGGGSGGSGGSGGRHPQQLL 68

[Close]

BLAST of CmoCh04G001900.1 vs. NCBI nr
Match: gi|1009121238|ref|XP_015877352.1| (PREDICTED: protein DA1-related 2 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVRPGPNRGG-GGSGSGGSPPQQLLGDQENIVWRAPARS 60
          LS PCI E+KS +MKWLSK+ + G +RGG GGSG GGS   Q +GD EN+VWRAP RS
Sbjct: 9  LSQPCIYERKSRFMKWLSKLFKGGSSRGGEGGSGGGGSRNPQFIGD-ENMVWRAPIRS 65

[Close]

BLAST of CmoCh04G001900.1 vs. NCBI nr
Match: gi|700195406|gb|KGN50583.1| (hypothetical protein Csa_5G187320 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.7e-10
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 16 MKWLSKIVRPGPNRGGGGSG--------SGGSPPQQLLGDQENIVWRAPARST 61
          MKWLS+I R G NRGGGG G        SGG  PQQLLGDQEN+VWRAPARS+
Sbjct: 1  MKWLSRIFRSGGNRGGGGGGGGSGGSGGSGGRHPQQLLGDQENMVWRAPARSS 53

[Close]

BLAST of CmoCh04G001900.1 vs. NCBI nr
Match: gi|802547079|ref|XP_012088416.1| (PREDICTED: protein DA1-related 2 [Jatropha curcas])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-09
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVRPGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PCI E+KS +MKWLSK+ R GP+RGGGG   GG  P QLLG++  + WR PARS
Sbjct: 14 ISNPCIYERKSRFMKWLSKLFRGGPSRGGGG---GGRHP-QLLGEESMVSWRQPARS 66

[Close]

BLAST of CmoCh04G001900.1 vs. NCBI nr
Match: gi|743879829|ref|XP_011036049.1| (PREDICTED: protein DA1-related 2 isoform X3 [Populus euphratica])

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVRPGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PCI E+KS +MKWL K+ + G NRGG   G  G    QLLG +EN+VW APARS
Sbjct: 11 ISNPCIYERKSRFMKWLGKLFKSGSNRGGARGGVVGRAHPQLLG-EENVVWSAPARS 66

The following BLAST results are available for this feature:

BLAST of CmoCh04G001900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G001900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLY0_CUCSA	4.7e-10	67.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187320 PE=4 SV=1	[more]
B9SE23_RICCO	3.3e-08	54.39	Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_1482680 PE=4 SV=1	[more]
A0A067FPA7_CITSI	6.3e-07	51.72	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0105812mg PE=4 ...	[more]
V4TBC3_9ROSI	6.3e-07	51.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031291mg PE=4 SV=1	[more]
B9HT51_POPTR	6.3e-07	46.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20500g PE=4 SV=1	[more]

BLAST of CmoCh04G001900.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G001900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701116\|ref\|XP_011654967.1\|	1.4e-15	64.00	PREDICTED: protein DA1-related 2 [Cucumis sativus]	[more]
gi\|1009121238\|ref\|XP_015877352.1\|	3.9e-10	63.79	PREDICTED: protein DA1-related 2 isoform X2 [Ziziphus jujuba]	[more]
gi\|700195406\|gb\|KGN50583.1\|	6.7e-10	67.92	hypothetical protein Csa_5G187320 [Cucumis sativus]	[more]
gi\|802547079\|ref\|XP_012088416.1\|	4.3e-09	59.65	PREDICTED: protein DA1-related 2 [Jatropha curcas]	[more]
gi\|743879829\|ref\|XP_011036049.1\|	2.8e-08	56.14	PREDICTED: protein DA1-related 2 isoform X3 [Populus euphratica]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G001900	CmoCh04G001900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001900.1	CmoCh04G001900.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001900.1.CDS.2	CmoCh04G001900.1.CDS.2	CDS
CmoCh04G001900.1.CDS.1	CmoCh04G001900.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001900.1.exon.2	CmoCh04G001900.1.exon.2	exon
CmoCh04G001900.1.exon.1	CmoCh04G001900.1.exon.1	exon