CmoCh04G001900 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G001900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 953762 .. 954177 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTATCTCATCCTTGCATTTCCGGTATTTCTAATTCTTCATTTCTAGACACTTCCATCGTTTTTGTTTATGAACCCACTGGAGTAATCTCCCTGACCCTTCATTTTGATTTTTGATTTGAGGGTTTAAGGAACTGCAGTATTTGGGATTTTGGGTCTGTTGGGATTTTTCCTCATCGATTTCTTTTTCTTCCTCATATGCAGAGAAAAAATCTGGGTGGATGAAATGGTTGAGCAAAATTGTCCGGCCAGGACCCAACAGGGGAGGCGGCGGCAGTGGCAGTGGCGGCAGCCCTCCACAGCAGCTTCTTGGTGATCAGGAGAACATAGTCTGGCGAGCTCCGGCTAGATCAACGGTCAACTTCTGTTTTTCCTTCCCCCACCTTCTATTGAATTTGATCTTCTTTGATTAG

mRNA sequence

ATGGATCTATCTCATCCTTGCATTTCCGAGAAAAAATCTGGGTGGATGAAATGGTTGAGCAAAATTGTCCGGCCAGGACCCAACAGGGGAGGCGGCGGCAGTGGCAGTGGCGGCAGCCCTCCACAGCAGCTTCTTGGTGATCAGGAGAACATAGTCTGGCGAGCTCCGGCTAGATCAACGGTCAACTTCTGTTTTTCCTTCCCCCACCTTCTATTGAATTTGATCTTCTTTGATTAG

Coding sequence (CDS)

ATGGATCTATCTCATCCTTGCATTTCCGAGAAAAAATCTGGGTGGATGAAATGGTTGAGCAAAATTGTCCGGCCAGGACCCAACAGGGGAGGCGGCGGCAGTGGCAGTGGCGGCAGCCCTCCACAGCAGCTTCTTGGTGATCAGGAGAACATAGTCTGGCGAGCTCCGGCTAGATCAACGGTCAACTTCTGTTTTTCCTTCCCCCACCTTCTATTGAATTTGATCTTCTTTGATTAG

Homology

[Close]

BLAST of CmoCh04G001900 vs. TrEMBL
Match: A0A0A0KLY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187320 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-10
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 16 MKWLSKIVRPGPNRGGGGSG--------SGGSPPQQLLGDQENIVWRAPARST 61
          MKWLS+I R G NRGGGG G        SGG  PQQLLGDQEN+VWRAPARS+
Sbjct: 1  MKWLSRIFRSGGNRGGGGGGGGSGGSGGSGGRHPQQLLGDQENMVWRAPARSS 53

[Close]

BLAST of CmoCh04G001900 vs. TrEMBL
Match: B9SE23_RICCO (Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_1482680 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVRPGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PCI E+KS +MKWLSK+ + GP RG      GGS   QLLG++  + WRAPARS
Sbjct: 17 ISNPCIYERKSRFMKWLSKLFKGGPTRG------GGSRHPQLLGEENMVSWRAPARS 67

[Close]

BLAST of CmoCh04G001900 vs. TrEMBL
Match: A0A067FPA7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0105812mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-07
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVR-PGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PC+ E+KS +MKWLSK+ +  G NRGGGG  + G    Q LG +E++VW AP RS
Sbjct: 11 ISNPCVYERKSRFMKWLSKLFKSTGSNRGGGGGSTSGRHHPQFLG-EESMVWPAPRRS 67

[Close]

BLAST of CmoCh04G001900 vs. TrEMBL
Match: V4TBC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031291mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-07
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVR-PGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PC+ E+KS +MKWLSK+ +  G NRGGGG  + G    Q LG +E++VW AP RS
Sbjct: 11 ISNPCVYERKSRFMKWLSKLFKSTGSNRGGGGGSTSGRHHPQFLG-EESMVWPAPRRS 67

[Close]

BLAST of CmoCh04G001900 vs. TrEMBL
Match: B9HT51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20500g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 3  LSHPCI------------SEKKSGWMKWLSKIVRPGPNRGGGGSGSGGSPPQQLLGDQEN 60
          +S+PCI            +E+KS +MKWL K+ + G NRGG   G GG    Q+LG +EN
Sbjct: 11 ISNPCIYGMFSGDFVSSYAERKSRFMKWLGKLFKSGSNRGGARGGVGGRAHPQILG-EEN 70

[Close]

BLAST of CmoCh04G001900 vs. NCBI nr
Match: gi|778701116|ref|XP_011654967.1| (PREDICTED: protein DA1-related 2 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 48/75 (64.00%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 3  LSHPCIS---------EKKSGWMKWLSKIVRPGPNRGGGG--------SGSGGSPPQQLL 61
          LS PCIS         EKKSGWMKWLS+I R G NRGGGG         GSGG  PQQLL
Sbjct: 9  LSQPCISGDFSSSSYAEKKSGWMKWLSRIFRSGGNRGGGGGGGGSGGSGGSGGRHPQQLL 68

[Close]

BLAST of CmoCh04G001900 vs. NCBI nr
Match: gi|1009121238|ref|XP_015877352.1| (PREDICTED: protein DA1-related 2 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVRPGPNRGG-GGSGSGGSPPQQLLGDQENIVWRAPARS 60
          LS PCI E+KS +MKWLSK+ + G +RGG GGSG GGS   Q +GD EN+VWRAP RS
Sbjct: 9  LSQPCIYERKSRFMKWLSKLFKGGSSRGGEGGSGGGGSRNPQFIGD-ENMVWRAPIRS 65

[Close]

BLAST of CmoCh04G001900 vs. NCBI nr
Match: gi|700195406|gb|KGN50583.1| (hypothetical protein Csa_5G187320 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.7e-10
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 16 MKWLSKIVRPGPNRGGGGSG--------SGGSPPQQLLGDQENIVWRAPARST 61
          MKWLS+I R G NRGGGG G        SGG  PQQLLGDQEN+VWRAPARS+
Sbjct: 1  MKWLSRIFRSGGNRGGGGGGGGSGGSGGSGGRHPQQLLGDQENMVWRAPARSS 53

[Close]

BLAST of CmoCh04G001900 vs. NCBI nr
Match: gi|802547079|ref|XP_012088416.1| (PREDICTED: protein DA1-related 2 [Jatropha curcas])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-09
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVRPGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PCI E+KS +MKWLSK+ R GP+RGGGG   GG  P QLLG++  + WR PARS
Sbjct: 14 ISNPCIYERKSRFMKWLSKLFRGGPSRGGGG---GGRHP-QLLGEESMVSWRQPARS 66

[Close]

BLAST of CmoCh04G001900 vs. NCBI nr
Match: gi|743879829|ref|XP_011036049.1| (PREDICTED: protein DA1-related 2 isoform X3 [Populus euphratica])

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 3  LSHPCISEKKSGWMKWLSKIVRPGPNRGGGGSGSGGSPPQQLLGDQENIVWRAPARS 60
          +S+PCI E+KS +MKWL K+ + G NRGG   G  G    QLLG +EN+VW APARS
Sbjct: 11 ISNPCIYERKSRFMKWLGKLFKSGSNRGGARGGVVGRAHPQLLG-EENVVWSAPARS 66

The following BLAST results are available for this feature:

BLAST of CmoCh04G001900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G001900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLY0_CUCSA	4.7e-10	67.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187320 PE=4 SV=1	[more]
B9SE23_RICCO	3.3e-08	54.39	Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_1482680 PE=4 SV=1	[more]
A0A067FPA7_CITSI	6.3e-07	51.72	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0105812mg PE=4 ...	[more]
V4TBC3_9ROSI	6.3e-07	51.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031291mg PE=4 SV=1	[more]
B9HT51_POPTR	6.3e-07	46.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20500g PE=4 SV=1	[more]

BLAST of CmoCh04G001900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G001900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701116\|ref\|XP_011654967.1\|	1.4e-15	64.00	PREDICTED: protein DA1-related 2 [Cucumis sativus]	[more]
gi\|1009121238\|ref\|XP_015877352.1\|	3.9e-10	63.79	PREDICTED: protein DA1-related 2 isoform X2 [Ziziphus jujuba]	[more]
gi\|700195406\|gb\|KGN50583.1\|	6.7e-10	67.92	hypothetical protein Csa_5G187320 [Cucumis sativus]	[more]
gi\|802547079\|ref\|XP_012088416.1\|	4.3e-09	59.65	PREDICTED: protein DA1-related 2 [Jatropha curcas]	[more]
gi\|743879829\|ref\|XP_011036049.1\|	2.8e-08	56.14	PREDICTED: protein DA1-related 2 isoform X3 [Populus euphratica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G001900.1	CmoCh04G001900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G001900	Cucumber (Gy14) v1	cgycmoB0373
CmoCh04G001900	Cucumber (Gy14) v1	cgycmoB0474
CmoCh04G001900	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G001900	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G001900	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G001900	Wild cucumber (PI 183967)	cmocpiB776
CmoCh04G001900	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G001900	Cucumber (Chinese Long) v2	cmocuB767
CmoCh04G001900	Melon (DHL92) v3.5.1	cmomeB646
CmoCh04G001900	Melon (DHL92) v3.5.1	cmomeB676
CmoCh04G001900	Watermelon (Charleston Gray)	cmowcgB630
CmoCh04G001900	Watermelon (Charleston Gray)	cmowcgB676
CmoCh04G001900	Watermelon (97103) v1	cmowmB673
CmoCh04G001900	Watermelon (97103) v1	cmowmB737
CmoCh04G001900	Cucurbita pepo (Zucchini)	cmocpeB653
CmoCh04G001900	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G001900	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G001900	Bottle gourd (USVL1VR-Ls)	cmolsiB630
CmoCh04G001900	Bottle gourd (USVL1VR-Ls)	cmolsiB649
CmoCh04G001900	Bottle gourd (USVL1VR-Ls)	cmolsiB670
CmoCh04G001900	Cucumber (Gy14) v2	cgybcmoB522
CmoCh04G001900	Cucumber (Gy14) v2	cgybcmoB652
CmoCh04G001900	Cucumber (Gy14) v2	cgybcmoB823
CmoCh04G001900	Melon (DHL92) v3.6.1	cmomedB733
CmoCh04G001900	Melon (DHL92) v3.6.1	cmomedB798
CmoCh04G001900	Silver-seed gourd	carcmoB0123
CmoCh04G001900	Silver-seed gourd	carcmoB0372
CmoCh04G001900	Silver-seed gourd	carcmoB0924
CmoCh04G001900	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G001900	Cucumber (Chinese Long) v3	cmocucB0906
CmoCh04G001900	Watermelon (97103) v2	cmowmbB722
CmoCh04G001900	Watermelon (97103) v2	cmowmbB755
CmoCh04G001900	Wax gourd	cmowgoB0837
CmoCh04G001900	Wax gourd	cmowgoB0864
CmoCh04G001900	Cucurbita moschata (Rifu)	cmocmoB267
CmoCh04G001900	Cucurbita moschata (Rifu)	cmocmoB448
CmoCh04G001900	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G001900	Cucurbita moschata (Rifu)	cmocmoB478