CmoCh04G001870.1 (mRNA) Cucurbita moschata (Rifu)

NameCmoCh04G001870.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCucumisin
LocationCmo_Chr04 : 945620 .. 945968 (-)
Sequence length276
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCAGTCATGATCATGGCGGGAAATAATGCGTCTTCTTCTTTGATCTTCAAGCTCGTCGTTCTAAACCTTGTTTGTTGTTTGCTTGCTTCTAGCTTCGATTCTGGTAACGATGGCCGAAAGGTATAGCACATTCGAGTTTGAAATGTATATTTGGTTTCTATGGTATAAAATTTTGTTGAATGAAACCTTGCAGGTTTATATTGTGTACTTGGGAAACAAGCGGGAGGATACGGCTTCAACTCCTTCACATCATACGAGAATGTTGGAAGAAACGATTGGAAGGTTCATCATCTTTCATTTTTTTTTCTTTTTTTCTTATGAACAAGAAAGTTTCATGCATTAA

mRNA sequence

ATGTTTCCAGTCATGATCATGGCGGGAAATAATGCGTCTTCTTCTTTGATCTTCAAGCTCGTCGTTCTAAACCTTGTTTGTTGTTTGCTTGCTTCTAGCTTCGATTCTGGTAACGATGGCCGAAAGGTTTATATTGTGTACTTGGGAAACAAGCGGGAGGATACGGCTTCAACTCCTTCACATCATACGAGAATGTTGGAAGAAACGATTGGAAGGTTCATCATCTTTCATTTTTTTTTCTTTTTTTCTTATGAACAAGAAAGTTTCATGCATTAA

Coding sequence (CDS)

ATGTTTCCAGTCATGATCATGGCGGGAAATAATGCGTCTTCTTCTTTGATCTTCAAGCTCGTCGTTCTAAACCTTGTTTGTTGTTTGCTTGCTTCTAGCTTCGATTCTGGTAACGATGGCCGAAAGGTTTATATTGTGTACTTGGGAAACAAGCGGGAGGATACGGCTTCAACTCCTTCACATCATACGAGAATGTTGGAAGAAACGATTGGAAGGTTCATCATCTTTCATTTTTTTTTCTTTTTTTCTTATGAACAAGAAAGTTTCATGCATTAA
BLAST of CmoCh04G001870.1 vs. Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-08
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 1

Query: 13 SSSLIFKLVVLNLVCC-LLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEETIG 72
          SSSLIFKL   +L     LAS  DS +DG+ +YIVY+G K ED  S   HH  MLE+ +G
Sbjct: 2  SSSLIFKLFFFSLFFSNRLASRLDSDDDGKNIYIVYMGRKLEDPDSAHLHHRAMLEQVVG 61

BLAST of CmoCh04G001870.1 vs. TrEMBL
Match: A0A0A0KLY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187860 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 1

Query: 13 SSSLIFKL---VVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEET 72
          SSSLIFKL   +VL LV  LLAS FDS ND RK+YIVY+GNK +DTASTPSHH RML E 
Sbjct: 2  SSSLIFKLALVLVLGLVSSLLASGFDSKNDDRKIYIVYMGNKPQDTASTPSHHMRMLREV 61

BLAST of CmoCh04G001870.1 vs. TrEMBL
Match: K7NBW1_SIRGR (Cucumisin OS=Siraitia grosvenorii PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1

Query: 14 SSLIFKLVVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEETIG 72
          SSL+FKL+ L+L C LL SS DS +DGRK+YIVY+G+K EDTAS   +H  MLEE +G
Sbjct: 7  SSLVFKLIFLSLFCSLLVSSSDSNDDGRKIYIVYMGSKLEDTASAHLYHRAMLEEVVG 64

BLAST of CmoCh04G001870.1 vs. TrEMBL
Match: A0A0A0KLR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187340 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-10
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1

Query: 7  MAGNNASSSLIFKLVVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRML 66
          MAG +   SLI   +  NL  C L S     NDGRK YIVY+G+K EDT+STP HH  ML
Sbjct: 1  MAGRSIVCSLILNFIFFNLFNCQLVSGSHLDNDGRKTYIVYMGSKLEDTSSTPLHHRAML 60

Query: 67 EETIG 72
          E+ +G
Sbjct: 61 EQVVG 65

BLAST of CmoCh04G001870.1 vs. NCBI nr
Match: gi|659123579|ref|XP_008461729.1| (PREDICTED: cucumisin-like isoform X1 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1

Query: 1  MFPVMIMAGNNA--SSSLIFKLVVLN-LVCCLLASSFDSGNDGRKVYIVYLGNKREDTAS 60
          MFP+M M    +  SSSL+FK VV + L C LLAS  DS NDGRK+YIVY+GNK ED+AS
Sbjct: 14 MFPLMRMISRRSMSSSSLVFKFVVFSSLFCSLLASGLDSDNDGRKIYIVYMGNKPEDSAS 73

Query: 61 TPSHHTRMLEETIG 72
          TPSHH RMLEE +G
Sbjct: 74 TPSHHMRMLEEVVG 87

BLAST of CmoCh04G001870.1 vs. NCBI nr
Match: gi|778701133|ref|XP_004149947.2| (PREDICTED: cucumisin-like [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-14
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 1

Query: 5  MIMAGNNASSSLIFKLVVLN-LVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHT 64
          MI   + +SSSLIFK V  + L   LLASS DS NDGRK+YIVY+GNK ED+ASTPSHH 
Sbjct: 3  MISRRSISSSSLIFKFVFFSSLFSSLLASSLDSDNDGRKIYIVYMGNKLEDSASTPSHHM 62

Query: 65 RMLEETIG 72
          RMLEE +G
Sbjct: 63 RMLEEVVG 70

BLAST of CmoCh04G001870.1 vs. NCBI nr
Match: gi|659123567|ref|XP_008461725.1| (PREDICTED: cucumisin-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-14
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1

Query: 1  MFPVMIMAGNNASSSLIFKL---VVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTAS 60
          +FP ++M  N  SSSLIFKL   +VL LV  LLAS  DS N  RK+YIVY+GNK +DTAS
Sbjct: 3  VFPPLVMTRNIMSSSLIFKLALVLVLGLVFSLLASGLDSENVDRKIYIVYMGNKPQDTAS 62

Query: 61 TPSHHTRMLEETIG 72
          TPSHH RML E  G
Sbjct: 63 TPSHHMRMLREVTG 76

BLAST of CmoCh04G001870.1 vs. NCBI nr
Match: gi|700195411|gb|KGN50588.1| (hypothetical protein Csa_5G187860 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 1

Query: 13 SSSLIFKL---VVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEET 72
          SSSLIFKL   +VL LV  LLAS FDS ND RK+YIVY+GNK +DTASTPSHH RML E 
Sbjct: 2  SSSLIFKLALVLVLGLVSSLLASGFDSKNDDRKIYIVYMGNKPQDTASTPSHHMRMLREV 61

BLAST of CmoCh04G001870.1 vs. NCBI nr
Match: gi|343466191|gb|AEM42989.1| (cucumisin [Siraitia grosvenorii])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1

Query: 14 SSLIFKLVVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEETIG 72
          SSL+FKL+ L+L C LL SS DS +DGRK+YIVY+G+K EDTAS   +H  MLEE +G
Sbjct: 7  SSLVFKLIFLSLFCSLLVSSSDSNDDGRKIYIVYMGSKLEDTASAHLYHRAMLEEVVG 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CUCM1_CUCME7.3e-0851.67Cucumisin OS=Cucumis melo PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KLY4_CUCSA1.4e-1370.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187860 PE=4 SV=1[more]
K7NBW1_SIRGR1.3e-1162.07Cucumisin OS=Siraitia grosvenorii PE=2 SV=1[more]
A0A0A0KLR1_CUCSA4.2e-1052.31Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187340 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659123579|ref|XP_008461729.1|3.3e-1664.86PREDICTED: cucumisin-like isoform X1 [Cucumis melo][more]
gi|778701133|ref|XP_004149947.2|4.0e-1466.18PREDICTED: cucumisin-like [Cucumis sativus][more]
gi|659123567|ref|XP_008461725.1|5.2e-1462.16PREDICTED: cucumisin-like [Cucumis melo][more]
gi|700195411|gb|KGN50588.1|2.0e-1370.97hypothetical protein Csa_5G187860 [Cucumis sativus][more]
gi|343466191|gb|AEM42989.1|1.9e-1162.07cucumisin [Siraitia grosvenorii][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008236 serine-type peptidase activity

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G001870CmoCh04G001870gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G001870.1CmoCh04G001870.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G001870.1.CDS.2CmoCh04G001870.1.CDS.2CDS
CmoCh04G001870.1.CDS.1CmoCh04G001870.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G001870.1.exon.2CmoCh04G001870.1.exon.2exon
CmoCh04G001870.1.exon.1CmoCh04G001870.1.exon.1exon