CmoCh04G001870 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G001870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCucumisin
LocationCmo_Chr04 : 945620 .. 945968 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCAGTCATGATCATGGCGGGAAATAATGCGTCTTCTTCTTTGATCTTCAAGCTCGTCGTTCTAAACCTTGTTTGTTGTTTGCTTGCTTCTAGCTTCGATTCTGGTAACGATGGCCGAAAGGTATAGCACATTCGAGTTTGAAATGTATATTTGGTTTCTATGGTATAAAATTTTGTTGAATGAAACCTTGCAGGTTTATATTGTGTACTTGGGAAACAAGCGGGAGGATACGGCTTCAACTCCTTCACATCATACGAGAATGTTGGAAGAAACGATTGGAAGGTTCATCATCTTTCATTTTTTTTTCTTTTTTTCTTATGAACAAGAAAGTTTCATGCATTAA

mRNA sequence

ATGTTTCCAGTCATGATCATGGCGGGAAATAATGCGTCTTCTTCTTTGATCTTCAAGCTCGTCGTTCTAAACCTTGTTTGTTGTTTGCTTGCTTCTAGCTTCGATTCTGGTAACGATGGCCGAAAGGTTTATATTGTGTACTTGGGAAACAAGCGGGAGGATACGGCTTCAACTCCTTCACATCATACGAGAATGTTGGAAGAAACGATTGGAAGGTTCATCATCTTTCATTTTTTTTTCTTTTTTTCTTATGAACAAGAAAGTTTCATGCATTAA

Coding sequence (CDS)

ATGTTTCCAGTCATGATCATGGCGGGAAATAATGCGTCTTCTTCTTTGATCTTCAAGCTCGTCGTTCTAAACCTTGTTTGTTGTTTGCTTGCTTCTAGCTTCGATTCTGGTAACGATGGCCGAAAGGTTTATATTGTGTACTTGGGAAACAAGCGGGAGGATACGGCTTCAACTCCTTCACATCATACGAGAATGTTGGAAGAAACGATTGGAAGGTTCATCATCTTTCATTTTTTTTTCTTTTTTTCTTATGAACAAGAAAGTTTCATGCATTAA
Homology
[Close]
BLAST of CmoCh04G001870 vs. Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-08
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 1 

Query: 13 SSSLIFKLVVLNLVCC-LLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEETIG 72
          SSSLIFKL   +L     LAS  DS +DG+ +YIVY+G K ED  S   HH  MLE+ +G
Sbjct: 2  SSSLIFKLFFFSLFFSNRLASRLDSDDDGKNIYIVYMGRKLEDPDSAHLHHRAMLEQVVG 61

[Close]
BLAST of CmoCh04G001870 vs. TrEMBL
Match: A0A0A0KLY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187860 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 13 SSSLIFKL---VVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEET 72
          SSSLIFKL   +VL LV  LLAS FDS ND RK+YIVY+GNK +DTASTPSHH RML E 
Sbjct: 2  SSSLIFKLALVLVLGLVSSLLASGFDSKNDDRKIYIVYMGNKPQDTASTPSHHMRMLREV 61

[Close]
BLAST of CmoCh04G001870 vs. TrEMBL
Match: K7NBW1_SIRGR (Cucumisin OS=Siraitia grosvenorii PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 14 SSLIFKLVVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEETIG 72
          SSL+FKL+ L+L C LL SS DS +DGRK+YIVY+G+K EDTAS   +H  MLEE +G
Sbjct: 7  SSLVFKLIFLSLFCSLLVSSSDSNDDGRKIYIVYMGSKLEDTASAHLYHRAMLEEVVG 64

[Close]
BLAST of CmoCh04G001870 vs. TrEMBL
Match: A0A0A0KLR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187340 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-10
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 7  MAGNNASSSLIFKLVVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRML 66
          MAG +   SLI   +  NL  C L S     NDGRK YIVY+G+K EDT+STP HH  ML
Sbjct: 1  MAGRSIVCSLILNFIFFNLFNCQLVSGSHLDNDGRKTYIVYMGSKLEDTSSTPLHHRAML 60

Query: 67 EETIG 72
          E+ +G
Sbjct: 61 EQVVG 65

[Close]
BLAST of CmoCh04G001870 vs. NCBI nr
Match: gi|659123579|ref|XP_008461729.1| (PREDICTED: cucumisin-like isoform X1 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1 

Query: 1  MFPVMIMAGNNA--SSSLIFKLVVLN-LVCCLLASSFDSGNDGRKVYIVYLGNKREDTAS 60
          MFP+M M    +  SSSL+FK VV + L C LLAS  DS NDGRK+YIVY+GNK ED+AS
Sbjct: 14 MFPLMRMISRRSMSSSSLVFKFVVFSSLFCSLLASGLDSDNDGRKIYIVYMGNKPEDSAS 73

Query: 61 TPSHHTRMLEETIG 72
          TPSHH RMLEE +G
Sbjct: 74 TPSHHMRMLEEVVG 87

[Close]
BLAST of CmoCh04G001870 vs. NCBI nr
Match: gi|778701133|ref|XP_004149947.2| (PREDICTED: cucumisin-like [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-14
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 1 

Query: 5  MIMAGNNASSSLIFKLVVLN-LVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHT 64
          MI   + +SSSLIFK V  + L   LLASS DS NDGRK+YIVY+GNK ED+ASTPSHH 
Sbjct: 3  MISRRSISSSSLIFKFVFFSSLFSSLLASSLDSDNDGRKIYIVYMGNKLEDSASTPSHHM 62

Query: 65 RMLEETIG 72
          RMLEE +G
Sbjct: 63 RMLEEVVG 70

[Close]
BLAST of CmoCh04G001870 vs. NCBI nr
Match: gi|659123567|ref|XP_008461725.1| (PREDICTED: cucumisin-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-14
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 1  MFPVMIMAGNNASSSLIFKL---VVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTAS 60
          +FP ++M  N  SSSLIFKL   +VL LV  LLAS  DS N  RK+YIVY+GNK +DTAS
Sbjct: 3  VFPPLVMTRNIMSSSLIFKLALVLVLGLVFSLLASGLDSENVDRKIYIVYMGNKPQDTAS 62

Query: 61 TPSHHTRMLEETIG 72
          TPSHH RML E  G
Sbjct: 63 TPSHHMRMLREVTG 76

[Close]
BLAST of CmoCh04G001870 vs. NCBI nr
Match: gi|700195411|gb|KGN50588.1| (hypothetical protein Csa_5G187860 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 13 SSSLIFKL---VVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEET 72
          SSSLIFKL   +VL LV  LLAS FDS ND RK+YIVY+GNK +DTASTPSHH RML E 
Sbjct: 2  SSSLIFKLALVLVLGLVSSLLASGFDSKNDDRKIYIVYMGNKPQDTASTPSHHMRMLREV 61

[Close]
BLAST of CmoCh04G001870 vs. NCBI nr
Match: gi|343466191|gb|AEM42989.1| (cucumisin [Siraitia grosvenorii])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 14 SSLIFKLVVLNLVCCLLASSFDSGNDGRKVYIVYLGNKREDTASTPSHHTRMLEETIG 72
          SSL+FKL+ L+L C LL SS DS +DGRK+YIVY+G+K EDTAS   +H  MLEE +G
Sbjct: 7  SSLVFKLIFLSLFCSLLVSSSDSNDDGRKIYIVYMGSKLEDTASAHLYHRAMLEEVVG 64

The following BLAST results are available for this feature:
BLAST of CmoCh04G001870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CUCM1_CUCME7.3e-0851.67Cucumisin OS=Cucumis melo PE=1 SV=1[more]
BLAST of CmoCh04G001870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLY4_CUCSA1.4e-1370.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187860 PE=4 SV=1[more]
K7NBW1_SIRGR1.3e-1162.07Cucumisin OS=Siraitia grosvenorii PE=2 SV=1[more]
A0A0A0KLR1_CUCSA4.2e-1052.31Uncharacterized protein OS=Cucumis sativus GN=Csa_5G187340 PE=4 SV=1[more]
BLAST of CmoCh04G001870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G001870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123579|ref|XP_008461729.1|3.3e-1664.86PREDICTED: cucumisin-like isoform X1 [Cucumis melo][more]
gi|778701133|ref|XP_004149947.2|4.0e-1466.18PREDICTED: cucumisin-like [Cucumis sativus][more]
gi|659123567|ref|XP_008461725.1|5.2e-1462.16PREDICTED: cucumisin-like [Cucumis melo][more]
gi|700195411|gb|KGN50588.1|2.0e-1370.97hypothetical protein Csa_5G187860 [Cucumis sativus][more]
gi|343466191|gb|AEM42989.1|1.9e-1162.07cucumisin [Siraitia grosvenorii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0004252 serine-type endopeptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G001870.1CmoCh04G001870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G001870Cla003979Watermelon (97103) v1cmowmB673
CmoCh04G001870CsGy5G007380Cucumber (Gy14) v2cgybcmoB652
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G001870Cucurbita pepo (Zucchini)cmocpeB653
CmoCh04G001870Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G001870Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G001870Bottle gourd (USVL1VR-Ls)cmolsiB630
CmoCh04G001870Bottle gourd (USVL1VR-Ls)cmolsiB649
CmoCh04G001870Bottle gourd (USVL1VR-Ls)cmolsiB670
CmoCh04G001870Cucumber (Gy14) v2cgybcmoB522
CmoCh04G001870Cucumber (Gy14) v2cgybcmoB823
CmoCh04G001870Melon (DHL92) v3.6.1cmomedB733
CmoCh04G001870Melon (DHL92) v3.6.1cmomedB798
CmoCh04G001870Silver-seed gourdcarcmoB0123
CmoCh04G001870Silver-seed gourdcarcmoB0372
CmoCh04G001870Silver-seed gourdcarcmoB0755
CmoCh04G001870Silver-seed gourdcarcmoB0924
CmoCh04G001870Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G001870Cucumber (Chinese Long) v3cmocucB0906
CmoCh04G001870Watermelon (97103) v2cmowmbB722
CmoCh04G001870Watermelon (97103) v2cmowmbB755
CmoCh04G001870Wax gourdcmowgoB0837
CmoCh04G001870Wax gourdcmowgoB0864
CmoCh04G001870Cucurbita moschata (Rifu)cmocmoB267
CmoCh04G001870Cucurbita moschata (Rifu)cmocmoB448
CmoCh04G001870Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G001870Cucumber (Gy14) v1cgycmoB0373
CmoCh04G001870Cucumber (Gy14) v1cgycmoB0474
CmoCh04G001870Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G001870Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G001870Wild cucumber (PI 183967)cmocpiB747
CmoCh04G001870Wild cucumber (PI 183967)cmocpiB776
CmoCh04G001870Cucumber (Chinese Long) v2cmocuB737
CmoCh04G001870Cucumber (Chinese Long) v2cmocuB767
CmoCh04G001870Melon (DHL92) v3.5.1cmomeB646
CmoCh04G001870Melon (DHL92) v3.5.1cmomeB676
CmoCh04G001870Watermelon (Charleston Gray)cmowcgB630
CmoCh04G001870Watermelon (Charleston Gray)cmowcgB676
CmoCh04G001870Watermelon (97103) v1cmowmB737