CmoCh04G001230.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGAAATGAAATTTTACAGACAAGGGTCTTTCGAGGATGAAGCACAGGACATAGTGGAGCTGTCCACGGAGGATGCTTATCGCATGGCAATGAAGAGCATGTTGAGATGGGTTAGGAAGAACATGGACCCCAAAAAGACTAGGGTTTTCTTCACTGCCATGTCCCCTTCTCATGGAAAGTTAGTTCTCTTTTTTCATATTCGAATATAATGTGACATCTGATTTTACACGAAAAATTATTTGAGGATAACACATATTTGTAGCGGCTATATTGAATAATGTTTTTTGTCATAGCCATCGTAACGTAACCAAGCTTTCATTTGGCTCTATAGGAGTATTGATTGGGGTGGTGAACAGGGTGACAACTGCTACAACCAAACGACTCTAATTGAAGATTCAAACTATTGGGGATCCGATTCGAAAAAAAGCTTAATGAAAGTGATTGGGGAAGTTTTCAGCCGGTCGAAGTTTCCTATCACATTTCTTAACATCACACAGCTCTCGAGCTATCGTAGAGATGCACACACATCGATTTACAAGAAGCAATGGTCACCATTAACGCCGGAGCAGCTAGCGAACCCGGTAAGCTATGCGGATTGCATCCATTGGTGCATGCCTGGTCTCCAAGATACTTGGAATGAGCTTCTTTTTACCAAACTTTTATATCCTCATTAATTGATGTTAAAATTCATCTGGGTTCTTCCCTCGGATCCTCTTTCTTTCATGTGGGTTTGTGAGCTTTGGGATTGATTGGTAGAGATAAAAGATGAGAAAATCAATTGAAAGATAGAGAGTGAATGATCACTATCACGGTCGTACATCTTTAATCGTACGATGTCGTAATTTTGACACGCTTACGACAAGTCTTAAGGGGGACTCAAGCTCTATTCATATTTTTTGTCCGACTTTGTGGCTTCGTCGTATCGTCAACAAGGTTTGCCTTTGCCAATTGAACACATCCTATGTGAAATCTAAGTTTGTTCAGCCGCACATACTGTTCATGTGTGCGTGTTCAATCGTGTGTGACACAATCACGTTGCATCATACCGTCATCTTGGTTCCCAACAACACAATTCATGCATCGTGGTGCCGATCCATGCCTCAGGACACATCCATTCATGTGAAATTCAAAAAGGGATGAGCTGAGTTTTTTTTTTGG ATGAATGAAATGAAATTTTACAGACAAGGGTCTTTCGAGGATGAAGCACAGGACATAGTGGAGCTGTCCACGGAGGATGCTTATCGCATGGCAATGAAGAGCATGTTGAGATGGGTTAGGAAGAACATGGACCCCAAAAAGACTAGGGTTTTCTTCACTGCCATGTCCCCTTCTCATGGAAAGAGTATTGATTGGGGTGGTGAACAGGGTGACAACTGCTACAACCAAACGACTCTAATTGAAGATTCAAACTATTGGGGATCCGATTCGAAAAAAAGCTTAATGAAAGTGATTGGGGAAGTTTTCAGCCGGTCGAAGTTTCCTATCACATTTCTTAACATCACACAGCTCTCGAGCTATCGTAGAGATGCACACACATCGATTTACAAGAAGCAATGGTCACCATTAACGCCGGAGCAGCTAGCGAACCCGGTAAGCTATGCGGATTGCATCCATTGGTGCATGCCTGGTCTCCAAGATACTTGGAATGAGCTTCTTTTTACCAAACTTTTATATCCTCATTAATTGATGTTAAAATTCATCTGGGTTCTTCCCTCGGATCCTCTTTCTTTCATGTGGGTTTGTGAGCTTTGGGATTGATTGGTAGAGATAAAAGATGAGAAAATCAATTGAAAGATAGAGAGTGAATGATCACTATCACGGTCGTACATCTTTAATCGTACGATGTCGTAATTTTGACACGCTTACGACAAGTCTTAAGGGGGACTCAAGCTCTATTCATATTTTTTGTCCGACTTTGTGGCTTCGTCGTATCGTCAACAAGGTTTGCCTTTGCCAATTGAACACATCCTATGTGAAATCTAAGTTTGTTCAGCCGCACATACTGTTCATGTGTGCGTGTTCAATCGTGTGTGACACAATCACGTTGCATCATACCGTCATCTTGGTTCCCAACAACACAATTCATGCATCGTGGTGCCGATCCATGCCTCAGGACACATCCATTCATGTGAAATTCAAAAAGGGATGAGCTGAGTTTTTTTTTTGG ATGAATGAAATGAAATTTTACAGACAAGGGTCTTTCGAGGATGAAGCACAGGACATAGTGGAGCTGTCCACGGAGGATGCTTATCGCATGGCAATGAAGAGCATGTTGAGATGGGTTAGGAAGAACATGGACCCCAAAAAGACTAGGGTTTTCTTCACTGCCATGTCCCCTTCTCATGGAAAGAGTATTGATTGGGGTGGTGAACAGGGTGACAACTGCTACAACCAAACGACTCTAATTGAAGATTCAAACTATTGGGGATCCGATTCGAAAAAAAGCTTAATGAAAGTGATTGGGGAAGTTTTCAGCCGGTCGAAGTTTCCTATCACATTTCTTAACATCACACAGCTCTCGAGCTATCGTAGAGATGCACACACATCGATTTACAAGAAGCAATGGTCACCATTAACGCCGGAGCAGCTAGCGAACCCGGTAAGCTATGCGGATTGCATCCATTGGTGCATGCCTGGTCTCCAAGATACTTGGAATGAGCTTCTTTTTACCAAACTTTTATATCCTCATTAA
BLAST of CmoCh04G001230.1 vs. Swiss-Prot
Match: TBL33_ARATH (Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 2.9e-77 Identity = 130/164 (79.27%), Postives = 146/164 (89.02%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. Swiss-Prot
Match: TBL32_ARATH (Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 3.4e-70 Identity = 120/166 (72.29%), Postives = 141/166 (84.94%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. Swiss-Prot
Match: TBL3_ARATH (Protein trichome birefringence-like 3 OS=Arabidopsis thaliana GN=TBL3 PE=2 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.3e-42 Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. Swiss-Prot
Match: TBL31_ARATH (Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38 Identity = 69/161 (42.86%), Postives = 109/161 (67.70%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. Swiss-Prot
Match: TBL35_ARATH (Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 1.7e-37 Identity = 73/171 (42.69%), Postives = 101/171 (59.06%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TrEMBL
Match: A0A0A0KM73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 3.6e-87 Identity = 149/166 (89.76%), Postives = 161/166 (96.99%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TrEMBL
Match: B9S472_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0687400 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 2.7e-82 Identity = 141/165 (85.45%), Postives = 157/165 (95.15%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TrEMBL
Match: A0A151U187_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_005705 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 2.7e-82 Identity = 142/163 (87.12%), Postives = 156/163 (95.71%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TrEMBL
Match: A0A067LJA3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01200 PE=4 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 1.0e-81 Identity = 142/171 (83.04%), Postives = 160/171 (93.57%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TrEMBL
Match: D7T4I9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g01930 PE=4 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 1.0e-81 Identity = 142/171 (83.04%), Postives = 158/171 (92.40%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TAIR10
Match: AT2G40320.1 (AT2G40320.1 TRICHOME BIREFRINGENCE-LIKE 33) HSP 1 Score: 289.3 bits (739), Expect = 1.6e-78 Identity = 130/164 (79.27%), Postives = 146/164 (89.02%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TAIR10
Match: AT3G11030.1 (AT3G11030.1 TRICHOME BIREFRINGENCE-LIKE 32) HSP 1 Score: 265.8 bits (678), Expect = 1.9e-71 Identity = 120/166 (72.29%), Postives = 141/166 (84.94%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TAIR10
Match: AT5G01360.1 (AT5G01360.1 Plant protein of unknown function (DUF828)) HSP 1 Score: 173.3 bits (438), Expect = 1.3e-43 Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TAIR10
Match: AT1G73140.1 (AT1G73140.1 Plant protein of unknown function (DUF828)) HSP 1 Score: 161.0 bits (406), Expect = 6.6e-40 Identity = 69/161 (42.86%), Postives = 109/161 (67.70%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. TAIR10
Match: AT5G01620.3 (AT5G01620.3 TRICHOME BIREFRINGENCE-LIKE 35) HSP 1 Score: 157.1 bits (396), Expect = 9.6e-39 Identity = 73/171 (42.69%), Postives = 101/171 (59.06%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. NCBI nr
Match: gi|659109721|ref|XP_008454841.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis melo]) HSP 1 Score: 329.7 bits (844), Expect = 3.0e-87 Identity = 150/166 (90.36%), Postives = 161/166 (96.99%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. NCBI nr
Match: gi|449460876|ref|XP_004148170.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus]) HSP 1 Score: 328.9 bits (842), Expect = 5.2e-87 Identity = 149/166 (89.76%), Postives = 161/166 (96.99%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. NCBI nr
Match: gi|255559543|ref|XP_002520791.1| (PREDICTED: protein trichome birefringence-like 33 [Ricinus communis]) HSP 1 Score: 312.8 bits (800), Expect = 3.9e-82 Identity = 141/165 (85.45%), Postives = 157/165 (95.15%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. NCBI nr
Match: gi|1012361909|gb|KYP73092.1| (hypothetical protein KK1_005705, partial [Cajanus cajan]) HSP 1 Score: 312.8 bits (800), Expect = 3.9e-82 Identity = 142/163 (87.12%), Postives = 156/163 (95.71%), Query Frame = 1
BLAST of CmoCh04G001230.1 vs. NCBI nr
Match: gi|802546738|ref|XP_012086714.1| (PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]) HSP 1 Score: 310.8 bits (795), Expect = 1.5e-81 Identity = 142/171 (83.04%), Postives = 160/171 (93.57%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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