CmoCh03G006460.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G006460.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr03 : 5879401 .. 5879824 (-)
Sequence length	198

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCGATCCAGAATGTGAGGGCGCATATAGCAATGCAAAGGCCTCGAACTCGAGTTGGAAAGATCTCGGAGCAGAGGATGTTGGGGACTGGACCAAAGCCCATGACAAAGCAACAGAAGTAAGCTACAACACTGATGGTTGAGATTGTTGCATTGGCAACAGACCCCATGTTCACCAAGCTACCAATGACAAGCACGATCAGTGATATTATAAGTACCGGAATGGTAGATAGCAGAAGAGACCTGCAAGAAAAATAAAGCTTCATGGTCATAATTGAGTCACAGGAGCAACTCAAAGACCATTTGAACAACAGTGGATTGTTATTTTTGTTTACCTTCTACCAGCTACGTCCATCAGCCTCATGGCAATGCCTATGGAAGGAAGCATCAGAAATGTAGTCAGAGCACTAATGAGCAGTGA

mRNA sequence

ATGTCTCCGATCCAGAATGTGAGGGCGCATATAGCAATGCAAAGGCCTCGAACTCGAGTTGGAAAGATCTCGGAGCAGAGGATGTTGGGGACTGGACCAAAGCCCATGACAAAGCAACAGAACTACGTCCATCAGCCTCATGGCAATGCCTATGGAAGGAAGCATCAGAAATGTAGTCAGAGCACTAATGAGCAGTGA

Coding sequence (CDS)

ATGTCTCCGATCCAGAATGTGAGGGCGCATATAGCAATGCAAAGGCCTCGAACTCGAGTTGGAAAGATCTCGGAGCAGAGGATGTTGGGGACTGGACCAAAGCCCATGACAAAGCAACAGAACTACGTCCATCAGCCTCATGGCAATGCCTATGGAAGGAAGCATCAGAAATGTAGTCAGAGCACTAATGAGCAGTGA

Homology

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BLAST of CmoCh03G006460.1 vs. TrEMBL
Match: J3LIR7_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-06
Identity = 29/42 (69.05%), Postives = 30/42 (71.43%), Query Frame = 1


Query: 1  MSPIQNVRAHIAMQRPRTRVGKISEQRMLGTGPKPMTKQQNY 43
          MS  Q     +AMQRPRTRVGKIS  RMLG GP PMTKQQ Y
Sbjct: 1  MSASQKASEQMAMQRPRTRVGKISAHRMLGMGPNPMTKQQRY 42

The following BLAST results are available for this feature:

BLAST of CmoCh03G006460.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G006460.1 vs. TrEMBL


Match Name	E-value	Identity	Description
J3LIR7_ORYBR	4.5e-06	69.05	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]

BLAST of CmoCh03G006460.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh03G006460.1 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G006460	CmoCh03G006460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G006460.1	CmoCh03G006460.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G006460.1.CDS.2	CmoCh03G006460.1.CDS.2	CDS
CmoCh03G006460.1.CDS.1	CmoCh03G006460.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G006460.1.exon.2	CmoCh03G006460.1.exon.2	exon
CmoCh03G006460.1.exon.1	CmoCh03G006460.1.exon.1	exon