CmoCh03G000680.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G000680.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
Location	Cmo_Chr03 : 1065372 .. 1065695 (-)
Sequence length	324

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTACTTCAAGAGCTTGAGAGCATACGTATCAGCGTCCAAAGTGTAGCAGAGAATTTATCGATCCTATTGCCCTTGTCGAGCATATTGAGAGGGAACATGGTGGTACTTCAAGAGCTTGAGCAGACGTATTGGTGTCCAAAGTGTAGCAAAGGATTTATTAATCCTATTGCCCTCGTTGAGCATATTGAGAGGGATCATGGGATACTTCAAGAGCTTGAGCTTTCGTATCGGCATCCAAAGTGTAGCAGAGGATTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAGGGATCATGGTGACACTTCAAGAGCTTGA

mRNA sequence

ATGGTGGTACTTCAAGAGCTTGAGAGCATACGTATCAGCGTCCAAAGTGTAGCAGAGAATTTATCGATCCTATTGCCCTTGTCGAGCATATTGAGAGGGAACATGGTGGTACTTCAAGAGCTTGAGCAGACGTATTGGTGTCCAAAGTGTAGCAAAGGATTTATTAATCCTATTGCCCTCGTTGAGCATATTGAGAGGGATCATGGGATACTTCAAGAGCTTGAGCTTTCGTATCGGCATCCAAAGTGTAGCAGAGGATTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAGGGATCATGGTGACACTTCAAGAGCTTGA

Coding sequence (CDS)

ATGGTGGTACTTCAAGAGCTTGAGAGCATACGTATCAGCGTCCAAAGTGTAGCAGAGAATTTATCGATCCTATTGCCCTTGTCGAGCATATTGAGAGGGAACATGGTGGTACTTCAAGAGCTTGAGCAGACGTATTGGTGTCCAAAGTGTAGCAAAGGATTTATTAATCCTATTGCCCTCGTTGAGCATATTGAGAGGGATCATGGGATACTTCAAGAGCTTGAGCTTTCGTATCGGCATCCAAAGTGTAGCAGAGGATTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAGGGATCATGGTGACACTTCAAGAGCTTGA

Homology

[Close]

BLAST of CmoCh03G000680.1 vs. Swiss-Prot
Match: SAP16_ORYSJ (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Oryza sativa subsp. japonica GN=SAP16 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-09
Identity = 33/68 (48.53%), Postives = 38/68 (55.88%), Query Frame = 1


Query: 47  CPKCSKGFINPIALVEHIERDHGILQELELSYRH-------PKCSRGFIDPVALVEHIER 106
           C +C   F    AL+EH E+ H   Q    S R        PKCS+ F DPV LVEH+ER
Sbjct: 226 CVQCPARFSTVGALIEHCEKSH---QSNSQSSRSRVTVDVCPKCSKAFRDPVLLVEHVER 285

Query: 107 DHGDTSRA 108
           DHG TSRA
Sbjct: 286 DHGGTSRA 290

[Close]

BLAST of CmoCh03G000680.1 vs. Swiss-Prot
Match: SAP11_ARATH (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Arabidopsis thaliana GN=SAP11 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.0e-09
Identity = 39/109 (35.78%), Postives = 52/109 (47.71%), Query Frame = 1


Query: 7   LESIRISVQSVAENLSILLPLSSILRGNMVVLQELEQTYWCPKCSKGFINPIALVEHIER 66
           L S    +  +  ++S  L  SS     +V +        CP+C   F +  +LVEH+E+
Sbjct: 183 LSSAEAGISRLGNDISQKLQFSSSKDNGIVEV--------CPQCGAKFSSVTSLVEHVEK 242

Query: 67  DHGILQELELSYRH--------PKCSRGFIDPVALVEHIERDHGDTSRA 108
            H    E      H        P+CSRGF DPV LV HIERDH  TS+A
Sbjct: 243 TH----ERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDHRGTSKA 279

[Close]

BLAST of CmoCh03G000680.1 vs. TrEMBL
Match: Q5NDD4_CUCSA (Somatic embryogenesis zinc finger 2 OS=Cucumis sativus GN=SEF2 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 43  QTYWCPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHI 102
           Q   CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHI
Sbjct: 220 QVEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHI 279

Query: 103 ERDHGDTSRA 108
           ERDHG TSRA
Sbjct: 280 ERDHGGTSRA 289

[Close]

BLAST of CmoCh03G000680.1 vs. TrEMBL
Match: A0A0A0L135_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166950 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 47  CPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHIERDH 106
           CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHIERDH
Sbjct: 224 CPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHIERDH 283

Query: 107 GDTSRA 108
           G TSRA
Sbjct: 284 GGTSRA 289

[Close]

BLAST of CmoCh03G000680.1 vs. TrEMBL
Match: C6TE01_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G137500 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 43  QTYWCPKCSKGFINPIALVEHIERDH---GILQELELSYRHPKCSRGFIDPVALVEHIER 102
           Q   CP+C   F +  ALV+H+++ H   G    ++     PKCSRGF+DPV+LVEH+ER
Sbjct: 225 QVEQCPQCGSKFSSVTALVDHVQKVHERNGNRLGVKKIDACPKCSRGFLDPVSLVEHVER 284

Query: 103 DHGDTSRA 108
           DHG  SRA
Sbjct: 285 DHGGGSRA 292

[Close]

BLAST of CmoCh03G000680.1 vs. TrEMBL
Match: A0A0B2PIF5_GLYSO (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Glycine soja GN=glysoja_012676 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 43  QTYWCPKCSKGFINPIALVEHIERDH---GILQELELSYRHPKCSRGFIDPVALVEHIER 102
           Q   CP+C   F +  ALV+H+++ H   G    ++     PKCSRGF+DPV+LVEH+ER
Sbjct: 225 QVEQCPQCGSKFSSVTALVDHVQKVHERNGNRLGVKKIDACPKCSRGFLDPVSLVEHVER 284

Query: 103 DHGDTSRA 108
           DHG  SRA
Sbjct: 285 DHGGGSRA 292

[Close]

BLAST of CmoCh03G000680.1 vs. TrEMBL
Match: W9RRL3_9ROSA (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Morus notabilis GN=L484_018002 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 47  CPKCSKGFINPIALVEHIERDH--------GILQELELSYRHPKCSRGFIDPVALVEHIE 106
           CP+C   F +   LVEH+E+ H        G    +++    PKCSRGF DPVALVEH+E
Sbjct: 227 CPQCGAKFSSVTTLVEHVEKVHERDGNRPGGKKVTVDVC---PKCSRGFRDPVALVEHVE 286

Query: 107 RDHGDTSRA 108
           RDHG TSRA
Sbjct: 287 RDHGGTSRA 292

[Close]

BLAST of CmoCh03G000680.1 vs. TAIR10
Match: AT2G41835.1 (AT2G41835.1 zinc finger (C2H2 type, AN1-like) family protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-10
Identity = 39/109 (35.78%), Postives = 52/109 (47.71%), Query Frame = 1


Query: 7   LESIRISVQSVAENLSILLPLSSILRGNMVVLQELEQTYWCPKCSKGFINPIALVEHIER 66
           L S    +  +  ++S  L  SS     +V +        CP+C   F +  +LVEH+E+
Sbjct: 183 LSSAEAGISRLGNDISQKLQFSSSKDNGIVEV--------CPQCGAKFSSVTSLVEHVEK 242

Query: 67  DHGILQELELSYRH--------PKCSRGFIDPVALVEHIERDHGDTSRA 108
            H    E      H        P+CSRGF DPV LV HIERDH  TS+A
Sbjct: 243 TH----ERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDHRGTSKA 279

[Close]

BLAST of CmoCh03G000680.1 vs. NCBI nr
Match: gi|525507204|ref|NP_001267641.1| (zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 43  QTYWCPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHI 102
           Q   CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHI
Sbjct: 220 QVEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHI 279

Query: 103 ERDHGDTSRA 108
           ERDHG TSRA
Sbjct: 280 ERDHGGTSRA 289

[Close]

BLAST of CmoCh03G000680.1 vs. NCBI nr
Match: gi|659121648|ref|XP_008460764.1| (PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 43  QTYWCPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHI 102
           Q   CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHI
Sbjct: 220 QVEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGAKKVVIDACPKCSRGFVDPVALVEHI 279

Query: 103 ERDHGDTSRA 108
           ERDHG TSRA
Sbjct: 280 ERDHGGTSRA 289

[Close]

BLAST of CmoCh03G000680.1 vs. NCBI nr
Match: gi|720078038|ref|XP_010241228.1| (PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Nelumbo nucifera])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-10
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1


Query: 47  CPKCSKGFINPIALVEHIERDH------GILQELELSYRHPKCSRGFIDPVALVEHIERD 106
           CP+C   F +  ALVEH+ER H        ++++ +    PKCSRGF DPV+LVEH+ERD
Sbjct: 225 CPQCQAKFTSVTALVEHVERVHEKGGNRAGIKKVTIDVC-PKCSRGFRDPVSLVEHVERD 284

Query: 107 HGDTSRA 108
           HG TS+A
Sbjct: 285 HGGTSKA 290

[Close]

BLAST of CmoCh03G000680.1 vs. NCBI nr
Match: gi|700198693|gb|KGN53851.1| (hypothetical protein Csa_4G166950 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-10
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 47  CPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHIERDH 106
           CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHIERDH
Sbjct: 224 CPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHIERDH 283

Query: 107 GDTSRA 108
           G TSRA
Sbjct: 284 GGTSRA 289

[Close]

BLAST of CmoCh03G000680.1 vs. NCBI nr
Match: gi|568873628|ref|XP_006489935.1| (PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 [Citrus sinensis])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 44  TYWCPKCSKGFINPIALVEHIERDH---GILQELELSYRH-PKCSRGFIDPVALVEHIER 103
           T  CP+C   F +   L+EH+E+ H   G     +++    PKCSRGF DPVALVEH+ER
Sbjct: 222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSRGFCDPVALVEHVER 281

Query: 104 DHGDTSRA 108
           DHG TSRA
Sbjct: 282 DHGGTSRA 289

The following BLAST results are available for this feature:

BLAST of CmoCh03G000680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAP16_ORYSJ	3.5e-09	48.53	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Oryza...	[more]
SAP11_ARATH	6.0e-09	35.78	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Arabi...	[more]

BLAST of CmoCh03G000680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q5NDD4_CUCSA	3.8e-10	50.00	Somatic embryogenesis zinc finger 2 OS=Cucumis sativus GN=SEF2 PE=2 SV=1	[more]
A0A0A0L135_CUCSA	6.4e-10	51.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166950 PE=4 SV=1	[more]
C6TE01_SOYBN	1.1e-09	48.53	Uncharacterized protein OS=Glycine max GN=GLYMA_03G137500 PE=2 SV=1	[more]
A0A0B2PIF5_GLYSO	1.1e-09	48.53	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Glyci...	[more]
W9RRL3_9ROSA	1.4e-09	50.72	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Morus...	[more]

BLAST of CmoCh03G000680.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41835.1	3.4e-10	35.78	zinc finger (C2H2 type, AN1-like) family protein	[more]

BLAST of CmoCh03G000680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507204\|ref\|NP_001267641.1\|	5.4e-10	50.00	zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like [Cu...	[more]
gi\|659121648\|ref\|XP_008460764.1\|	5.4e-10	50.00	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein ...	[more]
gi\|720078038\|ref\|XP_010241228.1\|	9.2e-10	50.75	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein ...	[more]
gi\|700198693\|gb\|KGN53851.1\|	9.2e-10	51.52	hypothetical protein Csa_4G166950 [Cucumis sativus]	[more]
gi\|568873628\|ref\|XP_006489935.1\|	1.2e-09	51.47	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR015880	Zinc finger, C2H2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G000680	CmoCh03G000680	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G000680.1	CmoCh03G000680.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G000680.1.CDS.1	CmoCh03G000680.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G000680.1.exon.1	CmoCh03G000680.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 47..68 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 45..68 score: 8
IPR015880	Zinc finger, C2H2-like	SMART	SM00355	c2h2final6	coord: 78..101 score: 32.0coord: 45..68 score:
None	No IPR available	PANTHER	PTHR14677	ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED	coord: 47..107 score: 5.0
None	No IPR available	PANTHER	PTHR14677:SF14	ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 11-RELATED	coord: 47..107 score: 5.0
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 44..97 score: 1.0