CmoCh03G000680 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G000680
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc finger AN1 and C2H2 domain-containing stress-associated protein 11
LocationCmo_Chr03 : 1065372 .. 1065695 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTACTTCAAGAGCTTGAGAGCATACGTATCAGCGTCCAAAGTGTAGCAGAGAATTTATCGATCCTATTGCCCTTGTCGAGCATATTGAGAGGGAACATGGTGGTACTTCAAGAGCTTGAGCAGACGTATTGGTGTCCAAAGTGTAGCAAAGGATTTATTAATCCTATTGCCCTCGTTGAGCATATTGAGAGGGATCATGGGATACTTCAAGAGCTTGAGCTTTCGTATCGGCATCCAAAGTGTAGCAGAGGATTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAGGGATCATGGTGACACTTCAAGAGCTTGA

mRNA sequence

ATGGTGGTACTTCAAGAGCTTGAGAGCATACGTATCAGCGTCCAAAGTGTAGCAGAGAATTTATCGATCCTATTGCCCTTGTCGAGCATATTGAGAGGGAACATGGTGGTACTTCAAGAGCTTGAGCAGACGTATTGGTGTCCAAAGTGTAGCAAAGGATTTATTAATCCTATTGCCCTCGTTGAGCATATTGAGAGGGATCATGGGATACTTCAAGAGCTTGAGCTTTCGTATCGGCATCCAAAGTGTAGCAGAGGATTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAGGGATCATGGTGACACTTCAAGAGCTTGA

Coding sequence (CDS)

ATGGTGGTACTTCAAGAGCTTGAGAGCATACGTATCAGCGTCCAAAGTGTAGCAGAGAATTTATCGATCCTATTGCCCTTGTCGAGCATATTGAGAGGGAACATGGTGGTACTTCAAGAGCTTGAGCAGACGTATTGGTGTCCAAAGTGTAGCAAAGGATTTATTAATCCTATTGCCCTCGTTGAGCATATTGAGAGGGATCATGGGATACTTCAAGAGCTTGAGCTTTCGTATCGGCATCCAAAGTGTAGCAGAGGATTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAGGGATCATGGTGACACTTCAAGAGCTTGA
Homology
[Close]
BLAST of CmoCh03G000680 vs. Swiss-Prot
Match: SAP16_ORYSJ (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Oryza sativa subsp. japonica GN=SAP16 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-09
Identity = 33/68 (48.53%), Postives = 38/68 (55.88%), Query Frame = 1 

Query: 47  CPKCSKGFINPIALVEHIERDHGILQELELSYRH-------PKCSRGFIDPVALVEHIER 106
           C +C   F    AL+EH E+ H   Q    S R        PKCS+ F DPV LVEH+ER
Sbjct: 226 CVQCPARFSTVGALIEHCEKSH---QSNSQSSRSRVTVDVCPKCSKAFRDPVLLVEHVER 285

Query: 107 DHGDTSRA 108
           DHG TSRA
Sbjct: 286 DHGGTSRA 290

[Close]
BLAST of CmoCh03G000680 vs. Swiss-Prot
Match: SAP11_ARATH (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Arabidopsis thaliana GN=SAP11 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.0e-09
Identity = 39/109 (35.78%), Postives = 52/109 (47.71%), Query Frame = 1 

Query: 7   LESIRISVQSVAENLSILLPLSSILRGNMVVLQELEQTYWCPKCSKGFINPIALVEHIER 66
           L S    +  +  ++S  L  SS     +V +        CP+C   F +  +LVEH+E+
Sbjct: 183 LSSAEAGISRLGNDISQKLQFSSSKDNGIVEV--------CPQCGAKFSSVTSLVEHVEK 242

Query: 67  DHGILQELELSYRH--------PKCSRGFIDPVALVEHIERDHGDTSRA 108
            H    E      H        P+CSRGF DPV LV HIERDH  TS+A
Sbjct: 243 TH----ERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDHRGTSKA 279

[Close]
BLAST of CmoCh03G000680 vs. TrEMBL
Match: Q5NDD4_CUCSA (Somatic embryogenesis zinc finger 2 OS=Cucumis sativus GN=SEF2 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 43  QTYWCPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHI 102
           Q   CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHI
Sbjct: 220 QVEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHI 279

Query: 103 ERDHGDTSRA 108
           ERDHG TSRA
Sbjct: 280 ERDHGGTSRA 289

[Close]
BLAST of CmoCh03G000680 vs. TrEMBL
Match: A0A0A0L135_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166950 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 47  CPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHIERDH 106
           CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHIERDH
Sbjct: 224 CPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHIERDH 283

Query: 107 GDTSRA 108
           G TSRA
Sbjct: 284 GGTSRA 289

[Close]
BLAST of CmoCh03G000680 vs. TrEMBL
Match: C6TE01_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G137500 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 43  QTYWCPKCSKGFINPIALVEHIERDH---GILQELELSYRHPKCSRGFIDPVALVEHIER 102
           Q   CP+C   F +  ALV+H+++ H   G    ++     PKCSRGF+DPV+LVEH+ER
Sbjct: 225 QVEQCPQCGSKFSSVTALVDHVQKVHERNGNRLGVKKIDACPKCSRGFLDPVSLVEHVER 284

Query: 103 DHGDTSRA 108
           DHG  SRA
Sbjct: 285 DHGGGSRA 292

[Close]
BLAST of CmoCh03G000680 vs. TrEMBL
Match: A0A0B2PIF5_GLYSO (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Glycine soja GN=glysoja_012676 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 43  QTYWCPKCSKGFINPIALVEHIERDH---GILQELELSYRHPKCSRGFIDPVALVEHIER 102
           Q   CP+C   F +  ALV+H+++ H   G    ++     PKCSRGF+DPV+LVEH+ER
Sbjct: 225 QVEQCPQCGSKFSSVTALVDHVQKVHERNGNRLGVKKIDACPKCSRGFLDPVSLVEHVER 284

Query: 103 DHGDTSRA 108
           DHG  SRA
Sbjct: 285 DHGGGSRA 292

[Close]
BLAST of CmoCh03G000680 vs. TrEMBL
Match: W9RRL3_9ROSA (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Morus notabilis GN=L484_018002 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 47  CPKCSKGFINPIALVEHIERDH--------GILQELELSYRHPKCSRGFIDPVALVEHIE 106
           CP+C   F +   LVEH+E+ H        G    +++    PKCSRGF DPVALVEH+E
Sbjct: 227 CPQCGAKFSSVTTLVEHVEKVHERDGNRPGGKKVTVDVC---PKCSRGFRDPVALVEHVE 286

Query: 107 RDHGDTSRA 108
           RDHG TSRA
Sbjct: 287 RDHGGTSRA 292

[Close]
BLAST of CmoCh03G000680 vs. TAIR10
Match: AT2G41835.1 (AT2G41835.1 zinc finger (C2H2 type, AN1-like) family protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-10
Identity = 39/109 (35.78%), Postives = 52/109 (47.71%), Query Frame = 1 

Query: 7   LESIRISVQSVAENLSILLPLSSILRGNMVVLQELEQTYWCPKCSKGFINPIALVEHIER 66
           L S    +  +  ++S  L  SS     +V +        CP+C   F +  +LVEH+E+
Sbjct: 183 LSSAEAGISRLGNDISQKLQFSSSKDNGIVEV--------CPQCGAKFSSVTSLVEHVEK 242

Query: 67  DHGILQELELSYRH--------PKCSRGFIDPVALVEHIERDHGDTSRA 108
            H    E      H        P+CSRGF DPV LV HIERDH  TS+A
Sbjct: 243 TH----ERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDHRGTSKA 279

[Close]
BLAST of CmoCh03G000680 vs. NCBI nr
Match: gi|525507204|ref|NP_001267641.1| (zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 43  QTYWCPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHI 102
           Q   CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHI
Sbjct: 220 QVEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHI 279

Query: 103 ERDHGDTSRA 108
           ERDHG TSRA
Sbjct: 280 ERDHGGTSRA 289

[Close]
BLAST of CmoCh03G000680 vs. NCBI nr
Match: gi|659121648|ref|XP_008460764.1| (PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 43  QTYWCPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHI 102
           Q   CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHI
Sbjct: 220 QVEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGAKKVVIDACPKCSRGFVDPVALVEHI 279

Query: 103 ERDHGDTSRA 108
           ERDHG TSRA
Sbjct: 280 ERDHGGTSRA 289

[Close]
BLAST of CmoCh03G000680 vs. NCBI nr
Match: gi|720078038|ref|XP_010241228.1| (PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Nelumbo nucifera])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-10
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 47  CPKCSKGFINPIALVEHIERDH------GILQELELSYRHPKCSRGFIDPVALVEHIERD 106
           CP+C   F +  ALVEH+ER H        ++++ +    PKCSRGF DPV+LVEH+ERD
Sbjct: 225 CPQCQAKFTSVTALVEHVERVHEKGGNRAGIKKVTIDVC-PKCSRGFRDPVSLVEHVERD 284

Query: 107 HGDTSRA 108
           HG TS+A
Sbjct: 285 HGGTSKA 290

[Close]
BLAST of CmoCh03G000680 vs. NCBI nr
Match: gi|700198693|gb|KGN53851.1| (hypothetical protein Csa_4G166950 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-10
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 47  CPKCSKGFINPIALVEHIERDHG-----ILQELELSYRHPKCSRGFIDPVALVEHIERDH 106
           CP+CS  F +  +L++H+E+ H         +  +    PKCSRGF+DPVALVEHIERDH
Sbjct: 224 CPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHIERDH 283

Query: 107 GDTSRA 108
           G TSRA
Sbjct: 284 GGTSRA 289

[Close]
BLAST of CmoCh03G000680 vs. NCBI nr
Match: gi|568873628|ref|XP_006489935.1| (PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 [Citrus sinensis])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 44  TYWCPKCSKGFINPIALVEHIERDH---GILQELELSYRH-PKCSRGFIDPVALVEHIER 103
           T  CP+C   F +   L+EH+E+ H   G     +++    PKCSRGF DPVALVEH+ER
Sbjct: 222 TELCPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSRGFCDPVALVEHVER 281

Query: 104 DHGDTSRA 108
           DHG TSRA
Sbjct: 282 DHGGTSRA 289

The following BLAST results are available for this feature:
BLAST of CmoCh03G000680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SAP16_ORYSJ3.5e-0948.53Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Oryza... [more]
SAP11_ARATH6.0e-0935.78Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Arabi... [more]
BLAST of CmoCh03G000680 vs. TrEMBL
Match NameE-valueIdentityDescription
Q5NDD4_CUCSA3.8e-1050.00Somatic embryogenesis zinc finger 2 OS=Cucumis sativus GN=SEF2 PE=2 SV=1[more]
A0A0A0L135_CUCSA6.4e-1051.52Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166950 PE=4 SV=1[more]
C6TE01_SOYBN1.1e-0948.53Uncharacterized protein OS=Glycine max GN=GLYMA_03G137500 PE=2 SV=1[more]
A0A0B2PIF5_GLYSO1.1e-0948.53Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Glyci... [more]
W9RRL3_9ROSA1.4e-0950.72Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Morus... [more]
BLAST of CmoCh03G000680 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41835.13.4e-1035.78 zinc finger (C2H2 type, AN1-like) family protein[more]
BLAST of CmoCh03G000680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507204|ref|NP_001267641.1|5.4e-1050.00zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like [Cu... [more]
gi|659121648|ref|XP_008460764.1|5.4e-1050.00PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein ... [more]
gi|720078038|ref|XP_010241228.1|9.2e-1050.75PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein ... [more]
gi|700198693|gb|KGN53851.1|9.2e-1051.52hypothetical protein Csa_4G166950 [Cucumis sativus][more]
gi|568873628|ref|XP_006489935.1|1.2e-0951.47PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
IPR015880Zinc finger, C2H2-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G000680.1CmoCh03G000680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 47..68
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 45..68
score: 8
IPR015880Zinc finger, C2H2-likeSMARTSM00355c2h2final6coord: 78..101
score: 32.0coord: 45..68
score:
NoneNo IPR availablePANTHERPTHR14677ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATEDcoord: 47..107
score: 5.0
NoneNo IPR availablePANTHERPTHR14677:SF14ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 11-RELATEDcoord: 47..107
score: 5.0
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 44..97
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G000680Csa4G166950Cucumber (Chinese Long) v2cmocuB654
CmoCh03G000680MELO3C023120Melon (DHL92) v3.5.1cmomeB609
CmoCh03G000680ClCG04G003230Watermelon (Charleston Gray)cmowcgB591
CmoCh03G000680CSPI04G10670Wild cucumber (PI 183967)cmocpiB665
CmoCh03G000680Lsi01G018540Bottle gourd (USVL1VR-Ls)cmolsiB590
CmoCh03G000680Cp4.1LG19g00560Cucurbita pepo (Zucchini)cmocpeB620
CmoCh03G000680Cp4.1LG10g11650Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G000680MELO3C023120.2Melon (DHL92) v3.6.1cmomedB691
CmoCh03G000680CsaV3_4G011780Cucumber (Chinese Long) v3cmocucB0776
CmoCh03G000680Cla97C04G070400Watermelon (97103) v2cmowmbB664
CmoCh03G000680Bhi03G001934Wax gourdcmowgoB0796
CmoCh03G000680CsGy4G010300Cucumber (Gy14) v2cgybcmoB503
CmoCh03G000680Carg12744Silver-seed gourdcarcmoB0394
CmoCh03G000680Carg22457Silver-seed gourdcarcmoB0273
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh03G000680CmoCh07G013650Cucurbita moschata (Rifu)cmocmoB461
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G000680Cucurbita maxima (Rimu)cmacmoB654
CmoCh03G000680Cucurbita maxima (Rimu)cmacmoB863
CmoCh03G000680Wild cucumber (PI 183967)cmocpiB674
CmoCh03G000680Cucumber (Chinese Long) v2cmocuB662
CmoCh03G000680Melon (DHL92) v3.5.1cmomeB601
CmoCh03G000680Watermelon (Charleston Gray)cmowcgB585
CmoCh03G000680Watermelon (97103) v1cmowmB625
CmoCh03G000680Watermelon (97103) v1cmowmB627
CmoCh03G000680Bottle gourd (USVL1VR-Ls)cmolsiB583
CmoCh03G000680Cucumber (Gy14) v2cgybcmoB513
CmoCh03G000680Melon (DHL92) v3.6.1cmomedB699
CmoCh03G000680Cucumber (Chinese Long) v3cmocucB0786
CmoCh03G000680Watermelon (97103) v2cmowmbB658
CmoCh03G000680Wax gourdcmowgoB0788
CmoCh03G000680Wax gourdcmowgoB0799