CmoCh02G000970.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G000970.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Basic helix-loop-helix DNA-binding superfamily protein
Location	Cmo_Chr02 : 518874 .. 519761 (-)
Sequence length	730

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGTTTGTTTCAATTTTCGATTTAATTAAGGTTTTTAAGCTTTGTTCTCAATTGGGTTTCCATCAAAATTTCAAATTTTTGTAGGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGGTATGGTGATCGTAATTCATCCGTTTAAGCTTTTGAGTTTAGTAATAGTTTTGACGTGGTTACGACGTGTTCGTAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAGAGCCACAAGATTGATTGGAAGCCAATTGGAAGACTTCAGGAGATTTCGAGTGGATAGGGAAATGGTCGATGGACCACCCATTATTTTA

mRNA sequence

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAGAGCCACAAGATTGATTGGAAGCCAATTGGAAGACTTCAGGAGATTTCGAGTGGATAGGGAAATGGTCGATGGACCACCCATTATTTTA

Coding sequence (CDS)

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAG

Homology

[Close]

BLAST of CmoCh02G000970.1 vs. TrEMBL
Match: W9RA84_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010338 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.8e-35
Identity = 90/189 (47.62%), Postives = 131/189 (69.31%), Query Frame = 1


Query: 6   EAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKY 65
           +A       S  K+ER+++EKNRRNQMK+LYSKLNSLLPP  S +   T+ DQ++EAI +
Sbjct: 16  QAMDQGSQSSATKIERRIIEKNRRNQMKVLYSKLNSLLPPQNSKEVQ-TLPDQVDEAINH 75

Query: 66  IQSLTVKLDKVKEKKKRILMSAPTRSPSSNL--------PELKIKEMGSAVEVVFMTELN 125
           I+SL  +L K KEKKK +L    + + +++L        P+++I E+GS +EVV +T L+
Sbjct: 76  IKSLEARLKKYKEKKKSLLGRKRSYTCANSLESVGSQRSPQIEIHEIGSVIEVVLITGLD 135

Query: 126 DRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 185
           ++F+FYE+IRI HEERA++++A YSV  D++ + +HAEI D +  FGATK++ERLKR   
Sbjct: 136 NQFIFYELIRILHEERADVVDAKYSVSRDSIFHVVHAEIADSI--FGATKISERLKRFVS 195

Query: 186 EWKSDAEQQ 187
              SD E Q
Sbjct: 196 GSSSDIELQ 201

[Close]

BLAST of CmoCh02G000970.1 vs. TrEMBL
Match: M5VT39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018357mg PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 91/182 (50.00%), Postives = 125/182 (68.68%), Query Frame = 1


Query: 15  STNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLD 74
           S+ KVER+V+EKNRRNQMK+LYSKLNSLLP  Q++  PL++ DQI+EAI YI+SL  KL 
Sbjct: 10  SSTKVERRVIEKNRRNQMKVLYSKLNSLLP-RQNSQEPLSLPDQIDEAINYIKSLETKLQ 69

Query: 75  KVKEK------KKRILMSAPTRSPS---SNLPELKIKEMGSAVEVVFMTEL-NDRFLFYE 134
           K KEK      KK+   +A T   S   S  P+++I EMGS +EVV ++ L N +F+F E
Sbjct: 70  KSKEKRDSLKGKKKRSHTACTNFDSMRCSKPPQIEIHEMGSTLEVVLISGLDNHQFMFTE 129

Query: 135 IIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAE 187
           IIRI HEE+A++++A+ S L D++ + + AE+   M  FGA K+TE+L+R      SD E
Sbjct: 130 IIRIVHEEQADVVHASLSTLGDSIFHVIRAEVGKSMIDFGAAKITEKLRRFVNGSTSDEE 189

[Close]

BLAST of CmoCh02G000970.1 vs. TrEMBL
Match: B9RVY4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1174080 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 87/191 (45.55%), Postives = 128/191 (67.02%), Query Frame = 1


Query: 5   REAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIK 64
           R A     + S+ K ERKV+EKNRRNQMK L+S LNSL P   + ++P  + DQI+EAI 
Sbjct: 41  RMAMAPSGSTSSTKTERKVIEKNRRNQMKTLFSNLNSLFPRRNAKEAP-PLPDQIDEAIN 100

Query: 65  YIQSLTVKLDKVKEKKKRILMSAPTR-----------SPSSNLPELKIKEMGSAVEVVFM 124
           +I+SL  KL K+K KK+ +  SA  R           + +S  P+L+IKEMGSA+E+V +
Sbjct: 101 HIKSLEEKLKKLKVKKESL--SARKRPFSECSDSYESASASRAPQLQIKEMGSALEIVLI 160

Query: 125 TELNDRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLK 184
           + L+++F+FYEIIRI H+E  +I +A+YSV  ++++Y +HAEI +  ++FGA K+T+RL 
Sbjct: 161 SGLDNQFMFYEIIRILHQEGVDIASASYSVAGNSIVYIVHAEIRESNFSFGAAKVTDRLN 220

[Close]

BLAST of CmoCh02G000970.1 vs. TrEMBL
Match: A5C0F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 78/174 (44.83%), Postives = 123/174 (70.69%), Query Frame = 1


Query: 11  QQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLT 70
           + N S+++ +RK +E+NRRN MK LYSKLNSL+P +Q++   +T+ DQ++EA  YI+ L 
Sbjct: 2   ESNPSSSRTDRKTIERNRRNHMKSLYSKLNSLVP-HQTSREAITLPDQLDEAANYIKRLQ 61

Query: 71  VKLDKVKEKKKRIL-MSAPTRSPSSNL------PELKIKEMGSAVEVVFMTELNDRFLFY 130
            KL+K+KE+K  ++    P  SP+S        P++ I E GSA+EVV +T L+ +F+F 
Sbjct: 62  EKLEKMKERKDNLMGFERPNTSPNSGAMVGLKPPQIDIHEKGSALEVVLITGLDFQFMFN 121

Query: 131 EIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 178
           E IR+ HEE AEI+NA++SV+DDTV +++HA++E  +   GA +++ERLK+  +
Sbjct: 122 ETIRVLHEEGAEIVNASFSVVDDTVFHTIHAQVEGPVLGHGAARISERLKKFVF 174

[Close]

BLAST of CmoCh02G000970.1 vs. TrEMBL
Match: B9N5W4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13340g PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 1


Query: 10  NQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSL 69
           +  N S+ K ERK++EKNRRNQMK LYSKLNSLLP NQ+   P  + DQI+EAI +I+SL
Sbjct: 13  SSSNISSTKTERKIIEKNRRNQMKTLYSKLNSLLP-NQNFKEPQPLPDQIDEAISHIKSL 72

Query: 70  TVKLDKVKEKKKRILMSA---------PTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 129
             KL K KEKK+ +  S          P    S   P+LKI+E+GSA+E+V  +  +++F
Sbjct: 73  EEKLKKAKEKKEGLTSSRKRSYTCTYDPMPIASPKPPQLKIQELGSALEIVLTSGPDNQF 132

Query: 130 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERL 173
           LFYEIIRI HEE  E+++A + VL D++   LHA++++    FGA K+TERL
Sbjct: 133 LFYEIIRILHEEGVEVVSANFQVLGDSIFQVLHAQMKESDNGFGAAKVTERL 183

[Close]

BLAST of CmoCh02G000970.1 vs. TAIR10
Match: AT4G20970.1 (AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 7.4e-25
Identity = 73/183 (39.89%), Postives = 115/183 (62.84%), Query Frame = 1


Query: 10  NQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSL 69
           +   G +  V+RK +EKNRR QMK LYS+L SLLP + ST+ PLT+ DQ++EA  YI+ L
Sbjct: 5   HSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKL 64

Query: 70  TVKLDKVKEKKKRI--------LMSAPTRSPSSN--------LPELKIKEMGSAVEVVFM 129
            V ++K +E+K+ +        L S  + S SS+        LP+++I+E GS   +  +
Sbjct: 65  QVNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLV 124

Query: 130 TELNDRFLFYEIIRIFHEE-RAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERL 176
           T L  +F+F EIIR+  EE  AEI +A YS++DD V ++LH ++E+  Y    +++ ERL
Sbjct: 125 TSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYG-ARSQIPERL 184

[Close]

BLAST of CmoCh02G000970.1 vs. TAIR10
Match: AT1G10585.1 (AT1G10585.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.9e-11
Identity = 51/177 (28.81%), Postives = 95/177 (53.67%), Query Frame = 1


Query: 4   GREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAI 63
           GR     + N S+ + +R + EK+RR +MK L+S L+S + P +     L V   I++A 
Sbjct: 2   GRAREIGEGNSSSLREQRNLREKDRRMRMKHLFSILSSHVSPTRK----LPVPHLIDQAT 61

Query: 64  KYIQSLTVKLDKVKEKKKRILMS--APTRSPSSNLPELKIKEMGSAVEVVFMTELN-DRF 123
            Y+  L   ++ +KEKK+ +L          S  LP+L I+   S +E+  + +LN  R 
Sbjct: 62  SYMIQLKENVNYLKEKKRTLLQGELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRV 121

Query: 124 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 178
           + +E++ IF EE A++++A    L+D   Y++ A+          +++ ER++++ Y
Sbjct: 122 MLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIY 174

[Close]

BLAST of CmoCh02G000970.1 vs. TAIR10
Match: AT1G10586.1 (AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 53/176 (30.11%), Postives = 99/176 (56.25%), Query Frame = 1


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60
           MER RE    + + S+ + +R + EK RR +MK L+S L+S + P +     L V   I+
Sbjct: 1   MERAREIG--EGSASSLREQRNLREKERRMRMKHLFSILSSHVSPTRR----LPVPQLID 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRIL-MSAPTRSP-SSNLPELKIKEMGSAVEVVFMTELND 120
           +A+ Y+  L  K++ + E K+R+L      RS  SS LP+L I+ + S +E+  + +LN 
Sbjct: 61  QAVSYMIQLKEKVNYLNEMKRRMLGGEVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNM 120

Query: 121 R-FLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLK 174
           +  + ++++ +F EE A++++A    L+D   Y++ A+          +++ ERL+
Sbjct: 121 KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLR 170

[Close]

BLAST of CmoCh02G000970.1 vs. NCBI nr
Match: gi|703080720|ref|XP_010091496.1| (hypothetical protein L484_010338 [Morus notabilis])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 90/189 (47.62%), Postives = 131/189 (69.31%), Query Frame = 1


Query: 6   EAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKY 65
           +A       S  K+ER+++EKNRRNQMK+LYSKLNSLLPP  S +   T+ DQ++EAI +
Sbjct: 16  QAMDQGSQSSATKIERRIIEKNRRNQMKVLYSKLNSLLPPQNSKEVQ-TLPDQVDEAINH 75

Query: 66  IQSLTVKLDKVKEKKKRILMSAPTRSPSSNL--------PELKIKEMGSAVEVVFMTELN 125
           I+SL  +L K KEKKK +L    + + +++L        P+++I E+GS +EVV +T L+
Sbjct: 76  IKSLEARLKKYKEKKKSLLGRKRSYTCANSLESVGSQRSPQIEIHEIGSVIEVVLITGLD 135

Query: 126 DRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 185
           ++F+FYE+IRI HEERA++++A YSV  D++ + +HAEI D +  FGATK++ERLKR   
Sbjct: 136 NQFIFYELIRILHEERADVVDAKYSVSRDSIFHVVHAEIADSI--FGATKISERLKRFVS 195

Query: 186 EWKSDAEQQ 187
              SD E Q
Sbjct: 196 GSSSDIELQ 201

[Close]

BLAST of CmoCh02G000970.1 vs. NCBI nr
Match: gi|743884720|ref|XP_011037352.1| (PREDICTED: transcription factor bHLH118-like [Populus euphratica])

HSP 1 Score: 146.7 bits (369), Expect = 4.5e-32
Identity = 85/169 (50.30%), Postives = 117/169 (69.23%), Query Frame = 1


Query: 13  NGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVK 72
           N S+ K ERKV+EKNRRNQMK LYSKLNSLLP NQ+   P  + DQI+EAI +I+SL  K
Sbjct: 19  NISSTKTERKVIEKNRRNQMKTLYSKLNSLLP-NQNFKEPQPLPDQIDEAISHIKSLEEK 78

Query: 73  LDKVKEKKKRILMSA---------PTRSPSSNLPELKIKEMGSAVEVVFMTELNDRFLFY 132
           L K +EKK+ +  S          PT   +   P+LKI+E+GSA+E+V  + ++++FLFY
Sbjct: 79  LKKAREKKEGLTSSRKRSYTCTYDPTPIAAPKSPQLKIQELGSALEIVLTSGIDNQFLFY 138

Query: 133 EIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERL 173
           EIIRI HEE  E+++A + VL D++   LHA++++    FGA K+TERL
Sbjct: 139 EIIRILHEEGVEVVSANFQVLGDSIFQVLHAQMKESDNGFGAAKVTERL 186

[Close]

BLAST of CmoCh02G000970.1 vs. NCBI nr
Match: gi|595790223|ref|XP_007198864.1| (hypothetical protein PRUPE_ppa018357mg [Prunus persica])

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 91/182 (50.00%), Postives = 125/182 (68.68%), Query Frame = 1


Query: 15  STNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLD 74
           S+ KVER+V+EKNRRNQMK+LYSKLNSLLP  Q++  PL++ DQI+EAI YI+SL  KL 
Sbjct: 10  SSTKVERRVIEKNRRNQMKVLYSKLNSLLP-RQNSQEPLSLPDQIDEAINYIKSLETKLQ 69

Query: 75  KVKEK------KKRILMSAPTRSPS---SNLPELKIKEMGSAVEVVFMTEL-NDRFLFYE 134
           K KEK      KK+   +A T   S   S  P+++I EMGS +EVV ++ L N +F+F E
Sbjct: 70  KSKEKRDSLKGKKKRSHTACTNFDSMRCSKPPQIEIHEMGSTLEVVLISGLDNHQFMFTE 129

Query: 135 IIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAE 187
           IIRI HEE+A++++A+ S L D++ + + AE+   M  FGA K+TE+L+R      SD E
Sbjct: 130 IIRIVHEEQADVVHASLSTLGDSIFHVIRAEVGKSMIDFGAAKITEKLRRFVNGSTSDEE 189

[Close]

BLAST of CmoCh02G000970.1 vs. NCBI nr
Match: gi|802785469|ref|XP_012091614.1| (PREDICTED: uncharacterized protein LOC105649551 [Jatropha curcas])

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 76/179 (42.46%), Postives = 125/179 (69.83%), Query Frame = 1


Query: 11  QQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLT 70
           + N S+++ +RK +E+NRRNQMK LYSKLNSL+P +Q++  P+++ DQ+EEA +YI+ L 
Sbjct: 2   ENNPSSSRTDRKTIERNRRNQMKALYSKLNSLVP-HQTSREPMSLPDQLEEAARYIKKLQ 61

Query: 71  VKLDKVKEKKKRI-----------LMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDR 130
             L+K+KE+K  +           + S+ T       P+++I EMGSA+E+V +T L+ +
Sbjct: 62  TNLEKMKERKNNLTGNEMENKASLMSSSRTTMQYLRSPQIEIHEMGSALEIVLITGLDSQ 121

Query: 131 FLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYE 179
           F+F E IR+ HEE AEI+NA +S ++DTV +++H++I D  ++ GA +++ERLK+L  +
Sbjct: 122 FMFNETIRVLHEEGAEIVNANFSAINDTVFHTIHSKISDSTHSCGAARISERLKKLVQD 179

[Close]

BLAST of CmoCh02G000970.1 vs. NCBI nr
Match: gi|147822237|emb|CAN61967.1| (hypothetical protein VITISV_010916 [Vitis vinifera])

HSP 1 Score: 143.7 bits (361), Expect = 3.8e-31
Identity = 78/174 (44.83%), Postives = 123/174 (70.69%), Query Frame = 1


Query: 11  QQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLT 70
           + N S+++ +RK +E+NRRN MK LYSKLNSL+P +Q++   +T+ DQ++EA  YI+ L 
Sbjct: 2   ESNPSSSRTDRKTIERNRRNHMKSLYSKLNSLVP-HQTSREAITLPDQLDEAANYIKRLQ 61

Query: 71  VKLDKVKEKKKRIL-MSAPTRSPSSNL------PELKIKEMGSAVEVVFMTELNDRFLFY 130
            KL+K+KE+K  ++    P  SP+S        P++ I E GSA+EVV +T L+ +F+F 
Sbjct: 62  EKLEKMKERKDNLMGFERPNTSPNSGAMVGLKPPQIDIHEKGSALEVVLITGLDFQFMFN 121

Query: 131 EIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 178
           E IR+ HEE AEI+NA++SV+DDTV +++HA++E  +   GA +++ERLK+  +
Sbjct: 122 ETIRVLHEEGAEIVNASFSVVDDTVFHTIHAQVEGPVLGHGAARISERLKKFVF 174

The following BLAST results are available for this feature:

BLAST of CmoCh02G000970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G000970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RA84_9ROSA	8.8e-35	47.62	Uncharacterized protein OS=Morus notabilis GN=L484_010338 PE=4 SV=1	[more]
M5VT39_PRUPE	1.2e-31	50.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018357mg PE=4 SV=1	[more]
B9RVY4_RICCO	2.6e-31	45.55	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1174080 PE=4 SV=1	[more]
A5C0F4_VITVI	2.6e-31	44.83	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1	[more]
B9N5W4_POPTR	3.5e-31	49.42	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13340g PE=4 SV=1	[more]

BLAST of CmoCh02G000970.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20970.1	7.4e-25	39.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	7.9e-11	28.81	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	1.8e-10	30.11	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmoCh02G000970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703080720\|ref\|XP_010091496.1\|	1.3e-34	47.62	hypothetical protein L484_010338 [Morus notabilis]	[more]
gi\|743884720\|ref\|XP_011037352.1\|	4.5e-32	50.30	PREDICTED: transcription factor bHLH118-like [Populus euphratica]	[more]
gi\|595790223\|ref\|XP_007198864.1\|	1.7e-31	50.00	hypothetical protein PRUPE_ppa018357mg [Prunus persica]	[more]
gi\|802785469\|ref\|XP_012091614.1\|	2.2e-31	42.46	PREDICTED: uncharacterized protein LOC105649551 [Jatropha curcas]	[more]
gi\|147822237\|emb\|CAN61967.1\|	3.8e-31	44.83	hypothetical protein VITISV_010916 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR015660	MASH1/Ascl1a-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G000970	CmoCh02G000970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G000970.1	CmoCh02G000970.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G000970.1.three_prime_UTR.1	CmoCh02G000970.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G000970.1.CDS.3	CmoCh02G000970.1.CDS.3	CDS
CmoCh02G000970.1.CDS.2	CmoCh02G000970.1.CDS.2	CDS
CmoCh02G000970.1.CDS.1	CmoCh02G000970.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G000970.1.exon.3	CmoCh02G000970.1.exon.3	exon
CmoCh02G000970.1.exon.2	CmoCh02G000970.1.exon.2	exon
CmoCh02G000970.1.exon.1	CmoCh02G000970.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 18..83 score: 5.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 21..69 score: 6.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 22..75 score: 7.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 16..69 score: 12
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 17..87 score: 2.09
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 1..186 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 59..79 scor
None	No IPR available	PANTHER	PTHR13935:SF53	BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN	coord: 1..186 score: 1.0