CmoCh02G000970 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G000970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Basic helix-loop-helix DNA-binding superfamily protein
Location	Cmo_Chr02 : 518874 .. 519761 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGTTTGTTTCAATTTTCGATTTAATTAAGGTTTTTAAGCTTTGTTCTCAATTGGGTTTCCATCAAAATTTCAAATTTTTGTAGGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGGTATGGTGATCGTAATTCATCCGTTTAAGCTTTTGAGTTTAGTAATAGTTTTGACGTGGTTACGACGTGTTCGTAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAGAGCCACAAGATTGATTGGAAGCCAATTGGAAGACTTCAGGAGATTTCGAGTGGATAGGGAAATGGTCGATGGACCACCCATTATTTTA

mRNA sequence

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAGAGCCACAAGATTGATTGGAAGCCAATTGGAAGACTTCAGGAGATTTCGAGTGGATAGGGAAATGGTCGATGGACCACCCATTATTTTA

Coding sequence (CDS)

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAAGCTCAATTCTCTCCTCCCACCCAATCAATCCACTGATTCGCCATTGACGGTGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTTATGTCGGCGCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCCGCTGTTGAGGTTGTTTTCATGACGGAATTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAGGAGCGAGCCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCGCTCCATGCTGAGATTGAAGACGTGATGTACGCGTTCGGAGCGACCAAACTAACGGAGAGGCTGAAAAGGTTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAG

Homology

[Close]

BLAST of CmoCh02G000970 vs. TrEMBL
Match: W9RA84_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010338 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.8e-35
Identity = 90/189 (47.62%), Postives = 131/189 (69.31%), Query Frame = 1


Query: 6   EAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKY 65
           +A       S  K+ER+++EKNRRNQMK+LYSKLNSLLPP  S +   T+ DQ++EAI +
Sbjct: 16  QAMDQGSQSSATKIERRIIEKNRRNQMKVLYSKLNSLLPPQNSKEVQ-TLPDQVDEAINH 75

Query: 66  IQSLTVKLDKVKEKKKRILMSAPTRSPSSNL--------PELKIKEMGSAVEVVFMTELN 125
           I+SL  +L K KEKKK +L    + + +++L        P+++I E+GS +EVV +T L+
Sbjct: 76  IKSLEARLKKYKEKKKSLLGRKRSYTCANSLESVGSQRSPQIEIHEIGSVIEVVLITGLD 135

Query: 126 DRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 185
           ++F+FYE+IRI HEERA++++A YSV  D++ + +HAEI D +  FGATK++ERLKR   
Sbjct: 136 NQFIFYELIRILHEERADVVDAKYSVSRDSIFHVVHAEIADSI--FGATKISERLKRFVS 195

Query: 186 EWKSDAEQQ 187
              SD E Q
Sbjct: 196 GSSSDIELQ 201

[Close]

BLAST of CmoCh02G000970 vs. TrEMBL
Match: M5VT39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018357mg PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 91/182 (50.00%), Postives = 125/182 (68.68%), Query Frame = 1


Query: 15  STNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLD 74
           S+ KVER+V+EKNRRNQMK+LYSKLNSLLP  Q++  PL++ DQI+EAI YI+SL  KL 
Sbjct: 10  SSTKVERRVIEKNRRNQMKVLYSKLNSLLP-RQNSQEPLSLPDQIDEAINYIKSLETKLQ 69

Query: 75  KVKEK------KKRILMSAPTRSPS---SNLPELKIKEMGSAVEVVFMTEL-NDRFLFYE 134
           K KEK      KK+   +A T   S   S  P+++I EMGS +EVV ++ L N +F+F E
Sbjct: 70  KSKEKRDSLKGKKKRSHTACTNFDSMRCSKPPQIEIHEMGSTLEVVLISGLDNHQFMFTE 129

Query: 135 IIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAE 187
           IIRI HEE+A++++A+ S L D++ + + AE+   M  FGA K+TE+L+R      SD E
Sbjct: 130 IIRIVHEEQADVVHASLSTLGDSIFHVIRAEVGKSMIDFGAAKITEKLRRFVNGSTSDEE 189

[Close]

BLAST of CmoCh02G000970 vs. TrEMBL
Match: B9RVY4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1174080 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 87/191 (45.55%), Postives = 128/191 (67.02%), Query Frame = 1


Query: 5   REAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIK 64
           R A     + S+ K ERKV+EKNRRNQMK L+S LNSL P   + ++P  + DQI+EAI 
Sbjct: 41  RMAMAPSGSTSSTKTERKVIEKNRRNQMKTLFSNLNSLFPRRNAKEAP-PLPDQIDEAIN 100

Query: 65  YIQSLTVKLDKVKEKKKRILMSAPTR-----------SPSSNLPELKIKEMGSAVEVVFM 124
           +I+SL  KL K+K KK+ +  SA  R           + +S  P+L+IKEMGSA+E+V +
Sbjct: 101 HIKSLEEKLKKLKVKKESL--SARKRPFSECSDSYESASASRAPQLQIKEMGSALEIVLI 160

Query: 125 TELNDRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLK 184
           + L+++F+FYEIIRI H+E  +I +A+YSV  ++++Y +HAEI +  ++FGA K+T+RL 
Sbjct: 161 SGLDNQFMFYEIIRILHQEGVDIASASYSVAGNSIVYIVHAEIRESNFSFGAAKVTDRLN 220

[Close]

BLAST of CmoCh02G000970 vs. TrEMBL
Match: A5C0F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 78/174 (44.83%), Postives = 123/174 (70.69%), Query Frame = 1


Query: 11  QQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLT 70
           + N S+++ +RK +E+NRRN MK LYSKLNSL+P +Q++   +T+ DQ++EA  YI+ L 
Sbjct: 2   ESNPSSSRTDRKTIERNRRNHMKSLYSKLNSLVP-HQTSREAITLPDQLDEAANYIKRLQ 61

Query: 71  VKLDKVKEKKKRIL-MSAPTRSPSSNL------PELKIKEMGSAVEVVFMTELNDRFLFY 130
            KL+K+KE+K  ++    P  SP+S        P++ I E GSA+EVV +T L+ +F+F 
Sbjct: 62  EKLEKMKERKDNLMGFERPNTSPNSGAMVGLKPPQIDIHEKGSALEVVLITGLDFQFMFN 121

Query: 131 EIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 178
           E IR+ HEE AEI+NA++SV+DDTV +++HA++E  +   GA +++ERLK+  +
Sbjct: 122 ETIRVLHEEGAEIVNASFSVVDDTVFHTIHAQVEGPVLGHGAARISERLKKFVF 174

[Close]

BLAST of CmoCh02G000970 vs. TrEMBL
Match: B9N5W4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13340g PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 1


Query: 10  NQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSL 69
           +  N S+ K ERK++EKNRRNQMK LYSKLNSLLP NQ+   P  + DQI+EAI +I+SL
Sbjct: 13  SSSNISSTKTERKIIEKNRRNQMKTLYSKLNSLLP-NQNFKEPQPLPDQIDEAISHIKSL 72

Query: 70  TVKLDKVKEKKKRILMSA---------PTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 129
             KL K KEKK+ +  S          P    S   P+LKI+E+GSA+E+V  +  +++F
Sbjct: 73  EEKLKKAKEKKEGLTSSRKRSYTCTYDPMPIASPKPPQLKIQELGSALEIVLTSGPDNQF 132

Query: 130 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERL 173
           LFYEIIRI HEE  E+++A + VL D++   LHA++++    FGA K+TERL
Sbjct: 133 LFYEIIRILHEEGVEVVSANFQVLGDSIFQVLHAQMKESDNGFGAAKVTERL 183

[Close]

BLAST of CmoCh02G000970 vs. TAIR10
Match: AT4G20970.1 (AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 7.4e-25
Identity = 73/183 (39.89%), Postives = 115/183 (62.84%), Query Frame = 1


Query: 10  NQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSL 69
           +   G +  V+RK +EKNRR QMK LYS+L SLLP + ST+ PLT+ DQ++EA  YI+ L
Sbjct: 5   HSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKL 64

Query: 70  TVKLDKVKEKKKRI--------LMSAPTRSPSSN--------LPELKIKEMGSAVEVVFM 129
            V ++K +E+K+ +        L S  + S SS+        LP+++I+E GS   +  +
Sbjct: 65  QVNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLV 124

Query: 130 TELNDRFLFYEIIRIFHEE-RAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERL 176
           T L  +F+F EIIR+  EE  AEI +A YS++DD V ++LH ++E+  Y    +++ ERL
Sbjct: 125 TSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYG-ARSQIPERL 184

[Close]

BLAST of CmoCh02G000970 vs. TAIR10
Match: AT1G10585.1 (AT1G10585.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.9e-11
Identity = 51/177 (28.81%), Postives = 95/177 (53.67%), Query Frame = 1


Query: 4   GREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAI 63
           GR     + N S+ + +R + EK+RR +MK L+S L+S + P +     L V   I++A 
Sbjct: 2   GRAREIGEGNSSSLREQRNLREKDRRMRMKHLFSILSSHVSPTRK----LPVPHLIDQAT 61

Query: 64  KYIQSLTVKLDKVKEKKKRILMS--APTRSPSSNLPELKIKEMGSAVEVVFMTELN-DRF 123
            Y+  L   ++ +KEKK+ +L          S  LP+L I+   S +E+  + +LN  R 
Sbjct: 62  SYMIQLKENVNYLKEKKRTLLQGELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRV 121

Query: 124 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 178
           + +E++ IF EE A++++A    L+D   Y++ A+          +++ ER++++ Y
Sbjct: 122 MLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIY 174

[Close]

BLAST of CmoCh02G000970 vs. TAIR10
Match: AT1G10586.1 (AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 53/176 (30.11%), Postives = 99/176 (56.25%), Query Frame = 1


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60
           MER RE    + + S+ + +R + EK RR +MK L+S L+S + P +     L V   I+
Sbjct: 1   MERAREIG--EGSASSLREQRNLREKERRMRMKHLFSILSSHVSPTRR----LPVPQLID 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRIL-MSAPTRSP-SSNLPELKIKEMGSAVEVVFMTELND 120
           +A+ Y+  L  K++ + E K+R+L      RS  SS LP+L I+ + S +E+  + +LN 
Sbjct: 61  QAVSYMIQLKEKVNYLNEMKRRMLGGEVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNM 120

Query: 121 R-FLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLK 174
           +  + ++++ +F EE A++++A    L+D   Y++ A+          +++ ERL+
Sbjct: 121 KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLR 170

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: gi|703080720|ref|XP_010091496.1| (hypothetical protein L484_010338 [Morus notabilis])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 90/189 (47.62%), Postives = 131/189 (69.31%), Query Frame = 1


Query: 6   EAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKY 65
           +A       S  K+ER+++EKNRRNQMK+LYSKLNSLLPP  S +   T+ DQ++EAI +
Sbjct: 16  QAMDQGSQSSATKIERRIIEKNRRNQMKVLYSKLNSLLPPQNSKEVQ-TLPDQVDEAINH 75

Query: 66  IQSLTVKLDKVKEKKKRILMSAPTRSPSSNL--------PELKIKEMGSAVEVVFMTELN 125
           I+SL  +L K KEKKK +L    + + +++L        P+++I E+GS +EVV +T L+
Sbjct: 76  IKSLEARLKKYKEKKKSLLGRKRSYTCANSLESVGSQRSPQIEIHEIGSVIEVVLITGLD 135

Query: 126 DRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 185
           ++F+FYE+IRI HEERA++++A YSV  D++ + +HAEI D +  FGATK++ERLKR   
Sbjct: 136 NQFIFYELIRILHEERADVVDAKYSVSRDSIFHVVHAEIADSI--FGATKISERLKRFVS 195

Query: 186 EWKSDAEQQ 187
              SD E Q
Sbjct: 196 GSSSDIELQ 201

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: gi|743884720|ref|XP_011037352.1| (PREDICTED: transcription factor bHLH118-like [Populus euphratica])

HSP 1 Score: 146.7 bits (369), Expect = 4.5e-32
Identity = 85/169 (50.30%), Postives = 117/169 (69.23%), Query Frame = 1


Query: 13  NGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVK 72
           N S+ K ERKV+EKNRRNQMK LYSKLNSLLP NQ+   P  + DQI+EAI +I+SL  K
Sbjct: 19  NISSTKTERKVIEKNRRNQMKTLYSKLNSLLP-NQNFKEPQPLPDQIDEAISHIKSLEEK 78

Query: 73  LDKVKEKKKRILMSA---------PTRSPSSNLPELKIKEMGSAVEVVFMTELNDRFLFY 132
           L K +EKK+ +  S          PT   +   P+LKI+E+GSA+E+V  + ++++FLFY
Sbjct: 79  LKKAREKKEGLTSSRKRSYTCTYDPTPIAAPKSPQLKIQELGSALEIVLTSGIDNQFLFY 138

Query: 133 EIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERL 173
           EIIRI HEE  E+++A + VL D++   LHA++++    FGA K+TERL
Sbjct: 139 EIIRILHEEGVEVVSANFQVLGDSIFQVLHAQMKESDNGFGAAKVTERL 186

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: gi|595790223|ref|XP_007198864.1| (hypothetical protein PRUPE_ppa018357mg [Prunus persica])

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 91/182 (50.00%), Postives = 125/182 (68.68%), Query Frame = 1


Query: 15  STNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLTVKLD 74
           S+ KVER+V+EKNRRNQMK+LYSKLNSLLP  Q++  PL++ DQI+EAI YI+SL  KL 
Sbjct: 10  SSTKVERRVIEKNRRNQMKVLYSKLNSLLP-RQNSQEPLSLPDQIDEAINYIKSLETKLQ 69

Query: 75  KVKEK------KKRILMSAPTRSPS---SNLPELKIKEMGSAVEVVFMTEL-NDRFLFYE 134
           K KEK      KK+   +A T   S   S  P+++I EMGS +EVV ++ L N +F+F E
Sbjct: 70  KSKEKRDSLKGKKKRSHTACTNFDSMRCSKPPQIEIHEMGSTLEVVLISGLDNHQFMFTE 129

Query: 135 IIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWKSDAE 187
           IIRI HEE+A++++A+ S L D++ + + AE+   M  FGA K+TE+L+R      SD E
Sbjct: 130 IIRIVHEEQADVVHASLSTLGDSIFHVIRAEVGKSMIDFGAAKITEKLRRFVNGSTSDEE 189

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: gi|802785469|ref|XP_012091614.1| (PREDICTED: uncharacterized protein LOC105649551 [Jatropha curcas])

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 76/179 (42.46%), Postives = 125/179 (69.83%), Query Frame = 1


Query: 11  QQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLT 70
           + N S+++ +RK +E+NRRNQMK LYSKLNSL+P +Q++  P+++ DQ+EEA +YI+ L 
Sbjct: 2   ENNPSSSRTDRKTIERNRRNQMKALYSKLNSLVP-HQTSREPMSLPDQLEEAARYIKKLQ 61

Query: 71  VKLDKVKEKKKRI-----------LMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDR 130
             L+K+KE+K  +           + S+ T       P+++I EMGSA+E+V +T L+ +
Sbjct: 62  TNLEKMKERKNNLTGNEMENKASLMSSSRTTMQYLRSPQIEIHEMGSALEIVLITGLDSQ 121

Query: 131 FLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYE 179
           F+F E IR+ HEE AEI+NA +S ++DTV +++H++I D  ++ GA +++ERLK+L  +
Sbjct: 122 FMFNETIRVLHEEGAEIVNANFSAINDTVFHTIHSKISDSTHSCGAARISERLKKLVQD 179

[Close]

BLAST of CmoCh02G000970 vs. NCBI nr
Match: gi|147822237|emb|CAN61967.1| (hypothetical protein VITISV_010916 [Vitis vinifera])

HSP 1 Score: 143.7 bits (361), Expect = 3.8e-31
Identity = 78/174 (44.83%), Postives = 123/174 (70.69%), Query Frame = 1


Query: 11  QQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIEEAIKYIQSLT 70
           + N S+++ +RK +E+NRRN MK LYSKLNSL+P +Q++   +T+ DQ++EA  YI+ L 
Sbjct: 2   ESNPSSSRTDRKTIERNRRNHMKSLYSKLNSLVP-HQTSREAITLPDQLDEAANYIKRLQ 61

Query: 71  VKLDKVKEKKKRIL-MSAPTRSPSSNL------PELKIKEMGSAVEVVFMTELNDRFLFY 130
            KL+K+KE+K  ++    P  SP+S        P++ I E GSA+EVV +T L+ +F+F 
Sbjct: 62  EKLEKMKERKDNLMGFERPNTSPNSGAMVGLKPPQIDIHEKGSALEVVLITGLDFQFMFN 121

Query: 131 EIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAY 178
           E IR+ HEE AEI+NA++SV+DDTV +++HA++E  +   GA +++ERLK+  +
Sbjct: 122 ETIRVLHEEGAEIVNASFSVVDDTVFHTIHAQVEGPVLGHGAARISERLKKFVF 174

The following BLAST results are available for this feature:

BLAST of CmoCh02G000970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G000970 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RA84_9ROSA	8.8e-35	47.62	Uncharacterized protein OS=Morus notabilis GN=L484_010338 PE=4 SV=1	[more]
M5VT39_PRUPE	1.2e-31	50.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018357mg PE=4 SV=1	[more]
B9RVY4_RICCO	2.6e-31	45.55	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1174080 PE=4 SV=1	[more]
A5C0F4_VITVI	2.6e-31	44.83	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1	[more]
B9N5W4_POPTR	3.5e-31	49.42	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13340g PE=4 SV=1	[more]

BLAST of CmoCh02G000970 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20970.1	7.4e-25	39.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	7.9e-11	28.81	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	1.8e-10	30.11	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmoCh02G000970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703080720\|ref\|XP_010091496.1\|	1.3e-34	47.62	hypothetical protein L484_010338 [Morus notabilis]	[more]
gi\|743884720\|ref\|XP_011037352.1\|	4.5e-32	50.30	PREDICTED: transcription factor bHLH118-like [Populus euphratica]	[more]
gi\|595790223\|ref\|XP_007198864.1\|	1.7e-31	50.00	hypothetical protein PRUPE_ppa018357mg [Prunus persica]	[more]
gi\|802785469\|ref\|XP_012091614.1\|	2.2e-31	42.46	PREDICTED: uncharacterized protein LOC105649551 [Jatropha curcas]	[more]
gi\|147822237\|emb\|CAN61967.1\|	3.8e-31	44.83	hypothetical protein VITISV_010916 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR015660	MASH1/Ascl1a-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G000970.1	CmoCh02G000970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 18..83 score: 5.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 21..69 score: 6.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 22..75 score: 7.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 16..69 score: 12
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 17..87 score: 2.09
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 1..186 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 59..79 scor
None	No IPR available	PANTHER	PTHR13935:SF53	BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN	coord: 1..186 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G000970	CmaCh11G018830	Cucurbita maxima (Rimu)	cmacmoB154

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G000970	Watermelon (Charleston Gray)	cmowcgB533
CmoCh02G000970	Watermelon (Charleston Gray)	cmowcgB539
CmoCh02G000970	Watermelon (97103) v1	cmowmB573
CmoCh02G000970	Watermelon (97103) v1	cmowmB582
CmoCh02G000970	Watermelon (97103) v1	cmowmB586
CmoCh02G000970	Cucurbita pepo (Zucchini)	cmocpeB570
CmoCh02G000970	Cucurbita pepo (Zucchini)	cmocpeB592
CmoCh02G000970	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G000970	Bottle gourd (USVL1VR-Ls)	cmolsiB535
CmoCh02G000970	Bottle gourd (USVL1VR-Ls)	cmolsiB544
CmoCh02G000970	Cucumber (Gy14) v2	cgybcmoB792
CmoCh02G000970	Cucumber (Gy14) v2	cgybcmoB943
CmoCh02G000970	Melon (DHL92) v3.6.1	cmomedB608
CmoCh02G000970	Melon (DHL92) v3.6.1	cmomedB621
CmoCh02G000970	Melon (DHL92) v3.6.1	cmomedB630
CmoCh02G000970	Silver-seed gourd	carcmoB0044
CmoCh02G000970	Silver-seed gourd	carcmoB0561
CmoCh02G000970	Silver-seed gourd	carcmoB0983
CmoCh02G000970	Cucumber (Chinese Long) v3	cmocucB0733
CmoCh02G000970	Cucumber (Chinese Long) v3	cmocucB0754
CmoCh02G000970	Watermelon (97103) v2	cmowmbB603
CmoCh02G000970	Wax gourd	cmowgoB0730
CmoCh02G000970	Wax gourd	cmowgoB0737
CmoCh02G000970	Cucurbita moschata (Rifu)	cmocmoB121
CmoCh02G000970	Cucurbita moschata (Rifu)	cmocmoB411
CmoCh02G000970	Cucurbita moschata (Rifu)	cmocmoB444
CmoCh02G000970	Cucumber (Gy14) v1	cgycmoB0038
CmoCh02G000970	Cucumber (Gy14) v1	cgycmoB0304
CmoCh02G000970	Cucumber (Gy14) v1	cgycmoB0307
CmoCh02G000970	Cucumber (Gy14) v1	cgycmoB0409
CmoCh02G000970	Cucurbita maxima (Rimu)	cmacmoB560
CmoCh02G000970	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G000970	Wild cucumber (PI 183967)	cmocpiB619
CmoCh02G000970	Wild cucumber (PI 183967)	cmocpiB643
CmoCh02G000970	Cucumber (Chinese Long) v2	cmocuB613
CmoCh02G000970	Cucumber (Chinese Long) v2	cmocuB632
CmoCh02G000970	Melon (DHL92) v3.5.1	cmomeB529
CmoCh02G000970	Melon (DHL92) v3.5.1	cmomeB543
CmoCh02G000970	Melon (DHL92) v3.5.1	cmomeB553