CmoCh01G018000.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G018000.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mitochondrial substrate carrier family protein J
Location	Cmo_Chr01 : 13244977 .. 13248067 (+)
Sequence length	1639

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTAGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGTCAAAGACGACCCTTAACGGCATTGCAGACTGTAAGAAACTTGATGAAGGAAGGTGGGTTGAATGCCTGTTACAGAGGGCTCGGGCCGAGGTGGGCGTCGATGGCTATGTCGGCCACCACCATGATCACGACCTATGAGTTTCTCAAACGGCTATCTGCTAAGAACCAAGATCGCTTGAGCTGATCGCCTTAGCTGGATTACAATGGCTTGGATATATTCCTAGAGGCAGATAATGTAATGCCCTTTTCTTTATCTTTTTTCTGGTGAACTTTATTCAAGATCATATTGAATATGGCATGGAAACATGTAGTGTTCATGCTTCAACAATAAGGAAATTCATTTTTTTCCCTTTCATTTCTCTTGTACAAATGTTCGTGCTAATAAGAAATATAATCGACTGTCAACATTCGATTTCTTTAATCGTTCTTTTAGTAGTTGGGAATGTTTAGAGTTTGATTCTGGGAAGATGATGGGCGAGGAATTCTACTATTGAAAATCGTTACCTCGTGCTCATGGCCTACCCGACTAATCCATTGGTAGGCGTCGTTCACTATCGGTCCAGTTCCAAGAACAATGCTTATAGTATTAAGTTTTATCTTGGGAGATCTAACAGGAACTGGAGAGATTTTCGAATGTTCATAAACTCGCACTGCTAACTTTTAACTACTCGTGTTTGATGTTCTGTAATTATATTTGTCGCTGTTTGTTCGAATTGATACTTATTATTTCTTTTCTTTCTTCTCCTTTCATATGCAGAGTGGAACAAAACAAACAAACACGGGCTATGGTTTGATGATTCGGTCTGCACGGTGAGAGATGTGGATTCAGTGTTCGATTCGCATTCTATTTGCTTTCCTTCTATAATAGCAACAGTGGGTCATCCTTGTAAGGTTCTTAGGAAGTGTTGCAGACCTACCTAACTCTCAACAGGTGAACTCTCATCTTTCTGTCTTTTATTTCGACTTTTTACGTGAAAATAAAAATGTCTCGAACCACTTAGATTCCGAGGGTAGTCTTACTTTCATTAATGTTGCATCTGTCGAGCCAAAACAAAACGTTGTGGAGAGGATGTTTGCATGAGAATCGACGGCCTGCTTAATATCGTCAAATATATCATGTTTCTTGTTTTGTGTTAGTGATTCGAGTTTTTTCTAAAAGATAAATAAAAAACAGAAAAACGAAAACGTTATGGCTTGTCTGTTCTGTATGGCTACAAGCTGGTAAGTTTACAAGACATGAAAGTCCTTCCTAGTTTTTGTTCAAGAAATCCAATAATGTCTTGTTTGTTTCAGCTGACTTTGTCGAAATCTGTTTGATGTCTGTCCAATGACTTATATGAACACAAAATTAACACCATTTTCAAGTACCATCTATTTTAGAAACATTTTCATACAACAGGAATTACATTATATTGAATGTGAGGATTCGAGTGATGTTCGTTTAAGGGAAAAGTTTTCGGGTTGTTCGAAGCTTATTAGACGTTTCATTTGCCTGAGCATCGGACCCATCAGGTAAAGCCATGATATGGAGTCTCACACTGTCCATTCTATCCATTGCAGATACAAGAGTGCTTCTTATCTCGGCTTGGTCGCAGCAGTGAATTAGTCCGGTAGAGCTTACGTTCGATGGGATTACGCTCTTTCCTTCCAATCGAGCTATCAACAAGAGATGGTTGGTTGTCTTTGCTTCTTCCAAGAGGCTTCCAAGCCCACAACGGTCCGCTGCGGAGCCTTTTGTCACCGCGCTGACACTGATGAACCCCTGTTGCATCAAAATGGCATCAGTTCTCCAAGTTTTTGAACTCGATACGTATATGGCGTGTAAAATGGATCTTTAAATACCTCGTCGGTTCGTTGGATATCCATTCCGAAACGAACTTCTCCTGATGCAGGAACCATTTCAAGTGGAACTTCTGAGACTCCAGGAAGAAACCATAGCCTTATCCCATGCACAACCTTCAGGTTTGGAGTGTTGTTTTGTTGCTTGCTCCACCATGATTCTTTTCCTGTTTTTCGAGTTTTGTCCTTCATAAGAACAAAAATTTAAACCGAACTAATGAGCTTCGACATCCGATTTGCAGATGGGATTGTCAACGATCATGCGAACGGGTATTACCTGAGCTACATTAACTATCTGTTCTGATTGAATATTGACAAAGACAAGAGGTGCTCCTGAAGAAACTGCAGCACAAAACCAGGCCATACACCGGCTAGTCGTGGCCTCCATGGAGTGCTCTCCCTGCAGTGGCACGAACAGGATGGAGCTTATGACCGAAGAACGATGGTCGGGTAGATGCAGGTCGAGTTTTTTGCTCCATTCATACTTCACACCTCTTCTGTTGAATTCTGCACCATCCGGGTTTGATATTCTTCTACTCATTTCTGCAACATCAAACTCTGTTACATTTCAAGCTGCCACTTACAGAACAACAATGGAGTACTAACCCACCCTGCAGTTCATTGCACTGGTCAAAGGTGAGATCACCGAGTACCACAACATGTCGATCGTCGGTTGCAGCTCCAACAGTGAACTTCCTATGCAAAATCGACGCCTTCTCTTGTATGATACGTGCTCGAAGCTTAAGCGTGGCATCTCCACGCTTAACCTTCAGCCACACAACCTCAAACTGCTGGCTGATCTTAGCAAGATGCGAACTGAGGTCAGCCTTGATCTTCGTCGAAACGAACAGCTCCTCGTCATTGTCTTCAGCAACACCTTCAATTACATCGCCCGGTAATGGCATCGTCTCGTCCCAATCCTCCATAGCTTCTTGCTTCACTCTTTTCACACAAACGACCGTTGGAAGACTACTCATTTTCGAGATCTCGAAAGATCAGTTGTGAGATATATTGGGTTCGAGTTTTTGAGCTTAAATTCAAGAAAGTTGTGACATTGGATCTGATTATTTCTTGAATATGTTTCGAACATCTCAAGAGTGTGGGATTTTAGGACTTTACGTCTGGGAGTTTGGTGGTTTCAATTTCTTTATTACTACTTGGGATCTGTCAATGCTTAGCTAATATCATTATTTTAT

mRNA sequence

ATGCCTCTAGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGTCAAAGACGACCCTTAACGGCATTGCAGACTGTAAGAAACTTGATGAAGGAAGAGTGGAACAAAACAAACAAACACGGGCTATGGTTTGATGATTCGGTCTGCACGGTGAGAGATGTGGATTCAGTGTTCGATTCGCATTCTATTTGCTTTCCTTCTATAATAGCAACAGTGGGTCATCCTTGTAAGGTTCTTAGGAAGTGTTGCAGACCTACCTAACTCTCAACAGATACAAGAGTGCTTCTTATCTCGGCTTGGTCGCAGCAGTGAATTAGTCCGGTAGAGCTTACGTTCGATGGGATTACGCTCTTTCCTTCCAATCGAGCTATCAACAAGAGATGGTTGGTTGTCTTTGCTTCTTCCAAGAGGCTTCCAAGCCCACAACGGTCCGCTGCGGAGCCTTTTGTCACCGCGCTGACACTGATGAACCCCTGTTGCATCAAAATGGCATCAGTTCTCCAAGTTTTTGAACTCGATACGTATATGGCGTGTAAAATGGATCTTTAAATACCTCGTCGGTTCGTTGGATATCCATTCCGAAACGAACTTCTCCTGATGCAGGAACCATTTCAAGTGGAACTTCTGAGACTCCAGGAAGAAACCATAGCCTTATCCCATGCACAACCTTCAGATGGGATTGTCAACGATCATGCGAACGGGTATTACCTGAGCTACATTAACTATCTGTTCTGATTGAATATTGACAAAGACAAGAGGTGCTCCTGAAGAAACTGCAGCACAAAACCAGGCCATACACCGGCTAGTCGTGGCCTCCATGGAGTGCTCTCCCTGCAGTGGCACGAACAGGATGGAGCTTATGACCGAAGAACGATGGTCGGGTAGATGCAGGTCGAGTTTTTTGCTCCATTCATACTTCACACCTCTTCTGTTGAATTCTGCACCATCCGGGTTTGATATTCTTCTACTCATTTCTGCAACATCAAACTCTGTTACATTTCAAGCTGCCACTTACAGAACAACAATGGAGTACTAACCCACCCTGCAGTTCATTGCACTGGTCAAAGGTGAGATCACCGAGTACCACAACATGTCGATCGTCGGTTGCAGCTCCAACAGTGAACTTCCTATGCAAAATCGACGCCTTCTCTTGTATGATACGTGCTCGAAGCTTAAGCGTGGCATCTCCACGCTTAACCTTCAGCCACACAACCTCAAACTGCTGGCTGATCTTAGCAAGATGCGAACTGAGGTCAGCCTTGATCTTCGTCGAAACGAACAGCTCCTCGTCATTGTCTTCAGCAACACCTTCAATTACATCGCCCGGTAATGGCATCGTCTCGTCCCAATCCTCCATAGCTTCTTGCTTCACTCTTTTCACACAAACGACCGTTGGAAGACTACTCATTTTCGAGATCTCGAAAGATCAGTTGTGAGATATATTGGGTTCGAGTTTTTGAGCTTAAATTCAAGAAAGTTGTGACATTGGATCTGATTATTTCTTGAATATGTTTCGAACATCTCAAGAGTGTGGGATTTTAGGACTTTACGTCTGGGAGTTTGGTGGTTTCAATTTCTTTATTACTACTTGGGATCTGTCAATGCTTAGCTAATATCATTATTTTAT

Coding sequence (CDS)

ATGCCTCTAGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGTCAAAGACGACCCTTAACGGCATTGCAGACTGTAAGAAACTTGATGAAGGAAGAGTGGAACAAAACAAACAAACACGGGCTATGGTTTGATGATTCGGTCTGCACGGTGAGAGATGTGGATTCAGTGTTCGATTCGCATTCTATTTGCTTTCCTTCTATAATAGCAACAGTGGGTCATCCTTGTAAGGTTCTTAGGAAGTGTTGCAGACCTACCTAA

Homology

[Close]

BLAST of CmoCh01G018000.1 vs. TrEMBL
Match: A0A0A0L431_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646360 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLTALQT+RNLMKE
Sbjct: 271 MPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLMKE 306

[Close]

BLAST of CmoCh01G018000.1 vs. TrEMBL
Match: W9QPM6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003773 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLT +QTVR+L+KE
Sbjct: 362 MPLDTIKTRLQVLDGEENGQRRPLTIVQTVRSLVKE 397

[Close]

BLAST of CmoCh01G018000.1 vs. TrEMBL
Match: F8WLA3_CITUN (Mitochondrial carrier protein OS=Citrus unshiu GN=ORF36 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLD EE GQRRPLT LQTVRNL+KE
Sbjct: 273 MPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKE 308

[Close]

BLAST of CmoCh01G018000.1 vs. TrEMBL
Match: V4UUI8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008781mg PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLD EE GQRRPLT LQTVRNL+KE
Sbjct: 273 MPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKE 308

[Close]

BLAST of CmoCh01G018000.1 vs. TrEMBL
Match: A0A067GDZ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018651mg PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLD EE GQRRPLT LQTVRNL+KE
Sbjct: 273 MPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKE 308

[Close]

BLAST of CmoCh01G018000.1 vs. TAIR10
Match: AT5G26200.1 (AT5G26200.1 Mitochondrial substrate carrier family protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MP+DTIKTRLQVLD EENG+RR +T +Q+V++LMKE
Sbjct: 267 MPVDTIKTRLQVLDAEENGRRRAMTVMQSVKSLMKE 302

[Close]

BLAST of CmoCh01G018000.1 vs. TAIR10
Match: AT1G72820.1 (AT1G72820.1 Mitochondrial substrate carrier family protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-06
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEE---NGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGE+   NG+R P    QTVRNL++E
Sbjct: 266 MPLDTIKTRLQVLDGEDSSNNGKRGPSIG-QTVRNLVRE 303

[Close]

BLAST of CmoCh01G018000.1 vs. NCBI nr
Match: gi|449447159|ref|XP_004141336.1| (PREDICTED: solute carrier family 25 member 44 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLTALQT+RNLMKE
Sbjct: 271 MPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLMKE 306

[Close]

BLAST of CmoCh01G018000.1 vs. NCBI nr
Match: gi|659103979|ref|XP_008452769.1| (PREDICTED: solute carrier family 25 member 44 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLTALQT+RNLMKE
Sbjct: 271 MPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLMKE 306

[Close]

BLAST of CmoCh01G018000.1 vs. NCBI nr
Match: gi|703082473|ref|XP_010091960.1| (hypothetical protein L484_003773 [Morus notabilis])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLT +QTVR+L+KE
Sbjct: 362 MPLDTIKTRLQVLDGEENGQRRPLTIVQTVRSLVKE 397

[Close]

BLAST of CmoCh01G018000.1 vs. NCBI nr
Match: gi|470135348|ref|XP_004303479.1| (PREDICTED: solute carrier family 25 member 44 [Fragaria vesca subsp. vesca])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDT+KTRLQVLDGEENGQRRPLT +QTV+NL++E
Sbjct: 274 MPLDTVKTRLQVLDGEENGQRRPLTVMQTVKNLVRE 309

[Close]

BLAST of CmoCh01G018000.1 vs. NCBI nr
Match: gi|567922050|ref|XP_006453031.1| (hypothetical protein CICLE_v10008781mg [Citrus clementina])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLD EE GQRRPLT LQTVRNL+KE
Sbjct: 273 MPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKE 308

The following BLAST results are available for this feature:

BLAST of CmoCh01G018000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G018000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L431_CUCSA	1.1e-10	97.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646360 PE=3 SV=1	[more]
W9QPM6_9ROSA	7.8e-09	88.89	Uncharacterized protein OS=Morus notabilis GN=L484_003773 PE=3 SV=1	[more]
F8WLA3_CITUN	1.7e-08	88.89	Mitochondrial carrier protein OS=Citrus unshiu GN=ORF36 PE=3 SV=1	[more]
V4UUI8_9ROSI	1.7e-08	88.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008781mg PE=3 SV=1	[more]
A0A067GDZ9_CITSI	1.7e-08	88.89	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018651mg PE=3 SV=1	[more]

BLAST of CmoCh01G018000.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26200.1	2.4e-09	72.22	Mitochondrial substrate carrier family protein	[more]
AT1G72820.1	2.5e-06	69.23	Mitochondrial substrate carrier family protein	[more]

BLAST of CmoCh01G018000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447159\|ref\|XP_004141336.1\|	1.6e-10	97.22	PREDICTED: solute carrier family 25 member 44 [Cucumis sativus]	[more]
gi\|659103979\|ref\|XP_008452769.1\|	1.6e-10	97.22	PREDICTED: solute carrier family 25 member 44 [Cucumis melo]	[more]
gi\|703082473\|ref\|XP_010091960.1\|	1.1e-08	88.89	hypothetical protein L484_003773 [Morus notabilis]	[more]
gi\|470135348\|ref\|XP_004303479.1\|	1.1e-08	83.33	PREDICTED: solute carrier family 25 member 44 [Fragaria vesca subsp. vesca]	[more]
gi\|567922050\|ref\|XP_006453031.1\|	2.5e-08	88.89	hypothetical protein CICLE_v10008781mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR023395	Mt_carrier_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G018000	CmoCh01G018000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018000.1	CmoCh01G018000.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018000.1.exon.4	CmoCh01G018000.1.exon.4	exon
CmoCh01G018000.1.exon.3	CmoCh01G018000.1.exon.3	exon
CmoCh01G018000.1.exon.2	CmoCh01G018000.1.exon.2	exon
CmoCh01G018000.1.exon.1	CmoCh01G018000.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018000.1.CDS.1	CmoCh01G018000.1.CDS.1	CDS
CmoCh01G018000.1.CDS.2	CmoCh01G018000.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018000.1.three_prime_UTR.1	CmoCh01G018000.1.three_prime_UTR.1	three_prime_UTR
CmoCh01G018000.1.three_prime_UTR.2	CmoCh01G018000.1.three_prime_UTR.2	three_prime_UTR
CmoCh01G018000.1.three_prime_UTR.3	CmoCh01G018000.1.three_prime_UTR.3	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023395	Mitochondrial carrier domain	GENE3D	G3DSA:1.50.40.10		coord: 1..37 score: 1.
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 1..36 score: 1.3
None	No IPR available	PANTHER	PTHR24089:SF319	SUBFAMILY NOT NAMED	coord: 1..36 score: 1.3