CmoCh01G018000 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G018000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMitochondrial substrate carrier family protein J
LocationCmo_Chr01 : 13244977 .. 13248067 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTAGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGTCAAAGACGACCCTTAACGGCATTGCAGACTGTAAGAAACTTGATGAAGGAAGGTGGGTTGAATGCCTGTTACAGAGGGCTCGGGCCGAGGTGGGCGTCGATGGCTATGTCGGCCACCACCATGATCACGACCTATGAGTTTCTCAAACGGCTATCTGCTAAGAACCAAGATCGCTTGAGCTGATCGCCTTAGCTGGATTACAATGGCTTGGATATATTCCTAGAGGCAGATAATGTAATGCCCTTTTCTTTATCTTTTTTCTGGTGAACTTTATTCAAGATCATATTGAATATGGCATGGAAACATGTAGTGTTCATGCTTCAACAATAAGGAAATTCATTTTTTTCCCTTTCATTTCTCTTGTACAAATGTTCGTGCTAATAAGAAATATAATCGACTGTCAACATTCGATTTCTTTAATCGTTCTTTTAGTAGTTGGGAATGTTTAGAGTTTGATTCTGGGAAGATGATGGGCGAGGAATTCTACTATTGAAAATCGTTACCTCGTGCTCATGGCCTACCCGACTAATCCATTGGTAGGCGTCGTTCACTATCGGTCCAGTTCCAAGAACAATGCTTATAGTATTAAGTTTTATCTTGGGAGATCTAACAGGAACTGGAGAGATTTTCGAATGTTCATAAACTCGCACTGCTAACTTTTAACTACTCGTGTTTGATGTTCTGTAATTATATTTGTCGCTGTTTGTTCGAATTGATACTTATTATTTCTTTTCTTTCTTCTCCTTTCATATGCAGAGTGGAACAAAACAAACAAACACGGGCTATGGTTTGATGATTCGGTCTGCACGGTGAGAGATGTGGATTCAGTGTTCGATTCGCATTCTATTTGCTTTCCTTCTATAATAGCAACAGTGGGTCATCCTTGTAAGGTTCTTAGGAAGTGTTGCAGACCTACCTAACTCTCAACAGGTGAACTCTCATCTTTCTGTCTTTTATTTCGACTTTTTACGTGAAAATAAAAATGTCTCGAACCACTTAGATTCCGAGGGTAGTCTTACTTTCATTAATGTTGCATCTGTCGAGCCAAAACAAAACGTTGTGGAGAGGATGTTTGCATGAGAATCGACGGCCTGCTTAATATCGTCAAATATATCATGTTTCTTGTTTTGTGTTAGTGATTCGAGTTTTTTCTAAAAGATAAATAAAAAACAGAAAAACGAAAACGTTATGGCTTGTCTGTTCTGTATGGCTACAAGCTGGTAAGTTTACAAGACATGAAAGTCCTTCCTAGTTTTTGTTCAAGAAATCCAATAATGTCTTGTTTGTTTCAGCTGACTTTGTCGAAATCTGTTTGATGTCTGTCCAATGACTTATATGAACACAAAATTAACACCATTTTCAAGTACCATCTATTTTAGAAACATTTTCATACAACAGGAATTACATTATATTGAATGTGAGGATTCGAGTGATGTTCGTTTAAGGGAAAAGTTTTCGGGTTGTTCGAAGCTTATTAGACGTTTCATTTGCCTGAGCATCGGACCCATCAGGTAAAGCCATGATATGGAGTCTCACACTGTCCATTCTATCCATTGCAGATACAAGAGTGCTTCTTATCTCGGCTTGGTCGCAGCAGTGAATTAGTCCGGTAGAGCTTACGTTCGATGGGATTACGCTCTTTCCTTCCAATCGAGCTATCAACAAGAGATGGTTGGTTGTCTTTGCTTCTTCCAAGAGGCTTCCAAGCCCACAACGGTCCGCTGCGGAGCCTTTTGTCACCGCGCTGACACTGATGAACCCCTGTTGCATCAAAATGGCATCAGTTCTCCAAGTTTTTGAACTCGATACGTATATGGCGTGTAAAATGGATCTTTAAATACCTCGTCGGTTCGTTGGATATCCATTCCGAAACGAACTTCTCCTGATGCAGGAACCATTTCAAGTGGAACTTCTGAGACTCCAGGAAGAAACCATAGCCTTATCCCATGCACAACCTTCAGGTTTGGAGTGTTGTTTTGTTGCTTGCTCCACCATGATTCTTTTCCTGTTTTTCGAGTTTTGTCCTTCATAAGAACAAAAATTTAAACCGAACTAATGAGCTTCGACATCCGATTTGCAGATGGGATTGTCAACGATCATGCGAACGGGTATTACCTGAGCTACATTAACTATCTGTTCTGATTGAATATTGACAAAGACAAGAGGTGCTCCTGAAGAAACTGCAGCACAAAACCAGGCCATACACCGGCTAGTCGTGGCCTCCATGGAGTGCTCTCCCTGCAGTGGCACGAACAGGATGGAGCTTATGACCGAAGAACGATGGTCGGGTAGATGCAGGTCGAGTTTTTTGCTCCATTCATACTTCACACCTCTTCTGTTGAATTCTGCACCATCCGGGTTTGATATTCTTCTACTCATTTCTGCAACATCAAACTCTGTTACATTTCAAGCTGCCACTTACAGAACAACAATGGAGTACTAACCCACCCTGCAGTTCATTGCACTGGTCAAAGGTGAGATCACCGAGTACCACAACATGTCGATCGTCGGTTGCAGCTCCAACAGTGAACTTCCTATGCAAAATCGACGCCTTCTCTTGTATGATACGTGCTCGAAGCTTAAGCGTGGCATCTCCACGCTTAACCTTCAGCCACACAACCTCAAACTGCTGGCTGATCTTAGCAAGATGCGAACTGAGGTCAGCCTTGATCTTCGTCGAAACGAACAGCTCCTCGTCATTGTCTTCAGCAACACCTTCAATTACATCGCCCGGTAATGGCATCGTCTCGTCCCAATCCTCCATAGCTTCTTGCTTCACTCTTTTCACACAAACGACCGTTGGAAGACTACTCATTTTCGAGATCTCGAAAGATCAGTTGTGAGATATATTGGGTTCGAGTTTTTGAGCTTAAATTCAAGAAAGTTGTGACATTGGATCTGATTATTTCTTGAATATGTTTCGAACATCTCAAGAGTGTGGGATTTTAGGACTTTACGTCTGGGAGTTTGGTGGTTTCAATTTCTTTATTACTACTTGGGATCTGTCAATGCTTAGCTAATATCATTATTTTAT

mRNA sequence

ATGCCTCTAGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGTCAAAGACGACCCTTAACGGCATTGCAGACTGTAAGAAACTTGATGAAGGAAGAGTGGAACAAAACAAACAAACACGGGCTATGGTTTGATGATTCGGTCTGCACGGTGAGAGATGTGGATTCAGTGTTCGATTCGCATTCTATTTGCTTTCCTTCTATAATAGCAACAGTGGGTCATCCTTGTAAGGTTCTTAGGAAGTGTTGCAGACCTACCTAACTCTCAACAGATACAAGAGTGCTTCTTATCTCGGCTTGGTCGCAGCAGTGAATTAGTCCGGTAGAGCTTACGTTCGATGGGATTACGCTCTTTCCTTCCAATCGAGCTATCAACAAGAGATGGTTGGTTGTCTTTGCTTCTTCCAAGAGGCTTCCAAGCCCACAACGGTCCGCTGCGGAGCCTTTTGTCACCGCGCTGACACTGATGAACCCCTGTTGCATCAAAATGGCATCAGTTCTCCAAGTTTTTGAACTCGATACGTATATGGCGTGTAAAATGGATCTTTAAATACCTCGTCGGTTCGTTGGATATCCATTCCGAAACGAACTTCTCCTGATGCAGGAACCATTTCAAGTGGAACTTCTGAGACTCCAGGAAGAAACCATAGCCTTATCCCATGCACAACCTTCAGATGGGATTGTCAACGATCATGCGAACGGGTATTACCTGAGCTACATTAACTATCTGTTCTGATTGAATATTGACAAAGACAAGAGGTGCTCCTGAAGAAACTGCAGCACAAAACCAGGCCATACACCGGCTAGTCGTGGCCTCCATGGAGTGCTCTCCCTGCAGTGGCACGAACAGGATGGAGCTTATGACCGAAGAACGATGGTCGGGTAGATGCAGGTCGAGTTTTTTGCTCCATTCATACTTCACACCTCTTCTGTTGAATTCTGCACCATCCGGGTTTGATATTCTTCTACTCATTTCTGCAACATCAAACTCTGTTACATTTCAAGCTGCCACTTACAGAACAACAATGGAGTACTAACCCACCCTGCAGTTCATTGCACTGGTCAAAGGTGAGATCACCGAGTACCACAACATGTCGATCGTCGGTTGCAGCTCCAACAGTGAACTTCCTATGCAAAATCGACGCCTTCTCTTGTATGATACGTGCTCGAAGCTTAAGCGTGGCATCTCCACGCTTAACCTTCAGCCACACAACCTCAAACTGCTGGCTGATCTTAGCAAGATGCGAACTGAGGTCAGCCTTGATCTTCGTCGAAACGAACAGCTCCTCGTCATTGTCTTCAGCAACACCTTCAATTACATCGCCCGGTAATGGCATCGTCTCGTCCCAATCCTCCATAGCTTCTTGCTTCACTCTTTTCACACAAACGACCGTTGGAAGACTACTCATTTTCGAGATCTCGAAAGATCAGTTGTGAGATATATTGGGTTCGAGTTTTTGAGCTTAAATTCAAGAAAGTTGTGACATTGGATCTGATTATTTCTTGAATATGTTTCGAACATCTCAAGAGTGTGGGATTTTAGGACTTTACGTCTGGGAGTTTGGTGGTTTCAATTTCTTTATTACTACTTGGGATCTGTCAATGCTTAGCTAATATCATTATTTTAT

Coding sequence (CDS)

ATGCCTCTAGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGTCAAAGACGACCCTTAACGGCATTGCAGACTGTAAGAAACTTGATGAAGGAAGAGTGGAACAAAACAAACAAACACGGGCTATGGTTTGATGATTCGGTCTGCACGGTGAGAGATGTGGATTCAGTGTTCGATTCGCATTCTATTTGCTTTCCTTCTATAATAGCAACAGTGGGTCATCCTTGTAAGGTTCTTAGGAAGTGTTGCAGACCTACCTAA
BLAST of CmoCh01G018000 vs. TrEMBL
Match: A0A0A0L431_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646360 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLTALQT+RNLMKE
Sbjct: 271 MPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLMKE 306

BLAST of CmoCh01G018000 vs. TrEMBL
Match: W9QPM6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003773 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLT +QTVR+L+KE
Sbjct: 362 MPLDTIKTRLQVLDGEENGQRRPLTIVQTVRSLVKE 397

BLAST of CmoCh01G018000 vs. TrEMBL
Match: F8WLA3_CITUN (Mitochondrial carrier protein OS=Citrus unshiu GN=ORF36 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLD EE GQRRPLT LQTVRNL+KE
Sbjct: 273 MPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKE 308

BLAST of CmoCh01G018000 vs. TrEMBL
Match: V4UUI8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008781mg PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLD EE GQRRPLT LQTVRNL+KE
Sbjct: 273 MPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKE 308

BLAST of CmoCh01G018000 vs. TrEMBL
Match: A0A067GDZ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018651mg PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLD EE GQRRPLT LQTVRNL+KE
Sbjct: 273 MPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKE 308

BLAST of CmoCh01G018000 vs. TAIR10
Match: AT5G26200.1 (AT5G26200.1 Mitochondrial substrate carrier family protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MP+DTIKTRLQVLD EENG+RR +T +Q+V++LMKE
Sbjct: 267 MPVDTIKTRLQVLDAEENGRRRAMTVMQSVKSLMKE 302

BLAST of CmoCh01G018000 vs. TAIR10
Match: AT1G72820.1 (AT1G72820.1 Mitochondrial substrate carrier family protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-06
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEE---NGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGE+   NG+R P    QTVRNL++E
Sbjct: 266 MPLDTIKTRLQVLDGEDSSNNGKRGPSIG-QTVRNLVRE 303

BLAST of CmoCh01G018000 vs. NCBI nr
Match: gi|449447159|ref|XP_004141336.1| (PREDICTED: solute carrier family 25 member 44 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLTALQT+RNLMKE
Sbjct: 271 MPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLMKE 306

BLAST of CmoCh01G018000 vs. NCBI nr
Match: gi|659103979|ref|XP_008452769.1| (PREDICTED: solute carrier family 25 member 44 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLTALQT+RNLMKE
Sbjct: 271 MPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLMKE 306

BLAST of CmoCh01G018000 vs. NCBI nr
Match: gi|703082473|ref|XP_010091960.1| (hypothetical protein L484_003773 [Morus notabilis])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLDGEENGQRRPLT +QTVR+L+KE
Sbjct: 362 MPLDTIKTRLQVLDGEENGQRRPLTIVQTVRSLVKE 397

BLAST of CmoCh01G018000 vs. NCBI nr
Match: gi|470135348|ref|XP_004303479.1| (PREDICTED: solute carrier family 25 member 44 [Fragaria vesca subsp. vesca])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDT+KTRLQVLDGEENGQRRPLT +QTV+NL++E
Sbjct: 274 MPLDTVKTRLQVLDGEENGQRRPLTVMQTVKNLVRE 309

BLAST of CmoCh01G018000 vs. NCBI nr
Match: gi|567922050|ref|XP_006453031.1| (hypothetical protein CICLE_v10008781mg [Citrus clementina])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1

Query: 1   MPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKE 37
           MPLDTIKTRLQVLD EE GQRRPLT LQTVRNL+KE
Sbjct: 273 MPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKE 308

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L431_CUCSA1.1e-1097.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646360 PE=3 SV=1[more]
W9QPM6_9ROSA7.8e-0988.89Uncharacterized protein OS=Morus notabilis GN=L484_003773 PE=3 SV=1[more]
F8WLA3_CITUN1.7e-0888.89Mitochondrial carrier protein OS=Citrus unshiu GN=ORF36 PE=3 SV=1[more]
V4UUI8_9ROSI1.7e-0888.89Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008781mg PE=3 SV=1[more]
A0A067GDZ9_CITSI1.7e-0888.89Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018651mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G26200.12.4e-0972.22 Mitochondrial substrate carrier family protein[more]
AT1G72820.12.5e-0669.23 Mitochondrial substrate carrier family protein[more]
Match NameE-valueIdentityDescription
gi|449447159|ref|XP_004141336.1|1.6e-1097.22PREDICTED: solute carrier family 25 member 44 [Cucumis sativus][more]
gi|659103979|ref|XP_008452769.1|1.6e-1097.22PREDICTED: solute carrier family 25 member 44 [Cucumis melo][more]
gi|703082473|ref|XP_010091960.1|1.1e-0888.89hypothetical protein L484_003773 [Morus notabilis][more]
gi|470135348|ref|XP_004303479.1|1.1e-0883.33PREDICTED: solute carrier family 25 member 44 [Fragaria vesca subsp. vesca][more]
gi|567922050|ref|XP_006453031.1|2.5e-0888.89hypothetical protein CICLE_v10008781mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G018000.1CmoCh01G018000.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023395Mitochondrial carrier domainGENE3DG3DSA:1.50.40.10coord: 1..37
score: 1.
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 1..36
score: 1.3
NoneNo IPR availablePANTHERPTHR24089:SF319SUBFAMILY NOT NAMEDcoord: 1..36
score: 1.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G018000CmoCh09G003560Cucurbita moschata (Rifu)cmocmoB014