CmoCh01G017800.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G017800.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nucleic acid binding protein, putative isoform 1
Location	Cmo_Chr01 : 13151983 .. 13153591 (-)
Sequence length	1274

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTTTTTTTTTTAAATGATTTTAAGTATTTATTTTGAAAAAAGGAAATGGGTCTTTTTTCTTTATTGTTTTTGTACTGAAAGCTTCTTGGTTTTTAGGCTTTTAGCAGAAGGCAGCAGGAAAGTTTGTTGACAACATTCAAGAGCCAGTGGTACTCTACAAGGTTTTTTCTTTTTGTGTGTTCATATAATCCCACCTGCGGAATTTCACTTATTTTCTGTTCTTCAATTTATTAATATATTTTTCATTATTTTTTGTTATGAATTAGGGTTTCAGTTTAATTTAATGAAGTGAAAGAGGATGATGAAGAAAGGAAATTTAACGGCGGAGGAACATTCGCCGCCACCGCCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGGAATCCAGGTTTCGTTTTTGTTAAGAATATGAATGAATGATTCGTGTTCGTAGTGAGAGATCTTATGTTCGAACTTTTTATTCGATTTTGAGTCAGACCCAGATGCTGAAGTGATCGCTTTGTCACCAAAAGCGCTTTTGACGACGAATAGATTCGTATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGCTAAAACAAAGAAGCAATAAGGAAGTTAGGAAGAAGGTTTACGTGTGTCCCGAGCTGACTTGCGTGCACCATCACCCGTCGAGGGCTCTCGGTGATCTTACCGGAATCAAGAAGCATTTTTGTCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAATGTTCGAAGAGATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGATTTGTGGTACTCGAGAGTATAGATGTGATTGTGGAACCCTCTTCTCCAGGTAACACGAGAAAACGTTATTAATATCTTATCCACTGAACTATACTGCGTGCCTTCGTTTTATGTCAAGAACATAGACAAAAACACGAGAGACAAAGATTTGTTGTTTTTATGTTTGGATTATTGTTTTTTTTTTTTGTTAGGAGGGACAGTTTCATAACCCATAGAGCCTTTTGCGATGCGTTGGCTCAAGAAAGTACCAATTTTGCATCATCAGCCATGAACAATAGCAACCCAATTCAACCAATTTTCTCAACACTGCGCCAATTCCCACTCAAAACTGAAAACCAAGACCCTTTTTATCCTTCAACTTCCAACATCCTCAATCCCTTTAACCCTAACCATAACCCTAACCCTACTTCGATCGGATTCGGGTTAGCCGGTCCTGGTTCGAGTCTTAATCCAGTGTTTGGTTCTGCATGGGAAATGAACTCTCCAAACATGATGGCTTTTGAAGAACCATCCTTTGAAGAAGCTCTAAATGGGATATTGATGAATAATCGAGCTAATAAAGACGGCGACAAATGCAGCGGCGGTGGCGGTGGCAGTGGCGGTGGCGCGGAGGAGATAACGAGAGATTTATTGGGGTTGAGAGCGTTGGCTCGACAGCCCGATCAACGTATGTTTGAGAATGAGATAGTAAACGACAGTCTGAATTTGGGTTCTTCTTCTTCGATGTTTGGATTGCATTTGAATCATCCAACTCAGACTATGTTTTGGCGTGATTAA

mRNA sequence

TCTTTTTTTTTTTTTAAATGATTTTAAGTATTTATTTTGAAAAAAGGAAATGGGTCTTTTTTCTTTATTGTTTTTGTACTGAAAGCTTCTTGGTTTTTAGGCTTTTAGCAGAAGGCAGCAGGAAAGTTTGTTGACAACATTCAAGAGCCAGTGGTACTCTACAAGGGTTTCAGTTTAATTTAATGAAGTGAAAGAGGATGATGAAGAAAGGAAATTTAACGGCGGAGGAACATTCGCCGCCACCGCCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGGAATCCAGACCCAGATGCTGAAGTGATCGCTTTGTCACCAAAAGCGCTTTTGACGACGAATAGATTCGTATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGCTAAAACAAAGAAGCAATAAGGAAGTTAGGAAGAAGGTTTACGTGTGTCCCGAGCTGACTTGCGTGCACCATCACCCGTCGAGGGCTCTCGGTGATCTTACCGGAATCAAGAAGCATTTTTGTCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAATGTTCGAAGAGATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGATTTGTGGTACTCGAGAGTATAGATGTGATTGTGGAACCCTCTTCTCCAGGAGGGACAGTTTCATAACCCATAGAGCCTTTTGCGATGCGTTGGCTCAAGAAAGTACCAATTTTGCATCATCAGCCATGAACAATAGCAACCCAATTCAACCAATTTTCTCAACACTGCGCCAATTCCCACTCAAAACTGAAAACCAAGACCCTTTTTATCCTTCAACTTCCAACATCCTCAATCCCTTTAACCCTAACCATAACCCTAACCCTACTTCGATCGGATTCGGGTTAGCCGGTCCTGGTTCGAGTCTTAATCCAGTGTTTGGTTCTGCATGGGAAATGAACTCTCCAAACATGATGGCTTTTGAAGAACCATCCTTTGAAGAAGCTCTAAATGGGATATTGATGAATAATCGAGCTAATAAAGACGGCGACAAATGCAGCGGCGGTGGCGGTGGCAGTGGCGGTGGCGCGGAGGAGATAACGAGAGATTTATTGGGGTTGAGAGCGTTGGCTCGACAGCCCGATCAACGTATGTTTGAGAATGAGATAGTAAACGACAGTCTGAATTTGGGTTCTTCTTCTTCGATGTTTGGATTGCATTTGAATCATCCAACTCAGACTATGTTTTGGCGTGATTAA

Coding sequence (CDS)

ATGATGAAGAAAGGAAATTTAACGGCGGAGGAACATTCGCCGCCACCGCCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGGAATCCAGACCCAGATGCTGAAGTGATCGCTTTGTCACCAAAAGCGCTTTTGACGACGAATAGATTCGTATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGCTAAAACAAAGAAGCAATAAGGAAGTTAGGAAGAAGGTTTACGTGTGTCCCGAGCTGACTTGCGTGCACCATCACCCGTCGAGGGCTCTCGGTGATCTTACCGGAATCAAGAAGCATTTTTGTCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAATGTTCGAAGAGATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGATTTGTGGTACTCGAGAGTATAGATGTGATTGTGGAACCCTCTTCTCCAGGAGGGACAGTTTCATAACCCATAGAGCCTTTTGCGATGCGTTGGCTCAAGAAAGTACCAATTTTGCATCATCAGCCATGAACAATAGCAACCCAATTCAACCAATTTTCTCAACACTGCGCCAATTCCCACTCAAAACTGAAAACCAAGACCCTTTTTATCCTTCAACTTCCAACATCCTCAATCCCTTTAACCCTAACCATAACCCTAACCCTACTTCGATCGGATTCGGGTTAGCCGGTCCTGGTTCGAGTCTTAATCCAGTGTTTGGTTCTGCATGGGAAATGAACTCTCCAAACATGATGGCTTTTGAAGAACCATCCTTTGAAGAAGCTCTAAATGGGATATTGATGAATAATCGAGCTAATAAAGACGGCGACAAATGCAGCGGCGGTGGCGGTGGCAGTGGCGGTGGCGCGGAGGAGATAACGAGAGATTTATTGGGGTTGAGAGCGTTGGCTCGACAGCCCGATCAACGTATGTTTGAGAATGAGATAGTAAACGACAGTCTGAATTTGGGTTCTTCTTCTTCGATGTTTGGATTGCATTTGAATCATCCAACTCAGACTATGTTTTGGCGTGATTAA

Homology

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BLAST of CmoCh01G017800.1 vs. Swiss-Prot
Match: IDD3_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 5.7e-88
Identity = 176/279 (63.08%), Postives = 199/279 (71.33%), Query Frame = 1


Query: 18  PPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPW 77
           PP  KKKRNLPGNPDP+AEVIALSPK L+ TNRF+CEIC KGFQRDQNLQLHRRGHNLPW
Sbjct: 37  PPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPW 96

Query: 78  KLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 137
           KLKQR++KEVRK+VYVCPE +CVHHHP+RALGDLTGIKKHFCRKHGEKKWKCEKC+KRYA
Sbjct: 97  KLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYA 156

Query: 138 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQEST---------NFASS 197
           VQSDWKAHSK CGTREYRCDCGT+FSRRDSFITHRAFCDALA+E+          +FA++
Sbjct: 157 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAAT 216

Query: 198 AMNNSN-----------------------PIQPIFSTLRQFPLKTEN---QDPFYP-STS 257
           A +N N                       P QP      QFP+ T N   QD   P ST 
Sbjct: 217 AGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPASTL 276

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BLAST of CmoCh01G017800.1 vs. Swiss-Prot
Match: IDD2_ARATH (Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.4e-86
Identity = 149/190 (78.42%), Postives = 167/190 (87.89%), Query Frame = 1


Query: 6   NLTAEEHSPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQN 65
           ++++  +  P P    KKKRNLPG PDP++EVIALSPK LL TNRFVCEICNKGFQRDQN
Sbjct: 18  SISSTGNQNPLPNSTGKKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQN 77

Query: 66  LQLHRRGHNLPWKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEK 125
           LQLHRRGHNLPWKL+Q+SNKEV+KKVYVCPE++CVHH PSRALGDLTGIKKHFCRKHGEK
Sbjct: 78  LQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEK 137

Query: 126 KWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNF 185
           KWKC+KCSK+YAVQSDWKAHSKICGT+EY+CDCGTLFSRRDSFITHRAFCDALA+E+   
Sbjct: 138 KWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENARS 197

Query: 186 ASSAMNNSNP 196
             S     NP
Sbjct: 198 HHSQSKKQNP 207

[Close]

BLAST of CmoCh01G017800.1 vs. Swiss-Prot
Match: IDD8_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.5e-85
Identity = 144/165 (87.27%), Postives = 155/165 (93.94%), Query Frame = 1


Query: 18  PPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPW 77
           PP  KKKRNLPGNPDP+AEVIALSP  L+ TNRF+CE+C KGFQRDQNLQLHRRGHNLPW
Sbjct: 33  PPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPW 92

Query: 78  KLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 137
           KLKQR++KEVRK+VYVCPE TCVHHH SRALGDLTGIKKHFCRKHGEKKW CEKC+KRYA
Sbjct: 93  KLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYA 152

Query: 138 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQES 183
           VQSDWKAHSK CGTREYRCDCGT+FSRRDSFITHRAFCDALA+E+
Sbjct: 153 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEET 197

[Close]

BLAST of CmoCh01G017800.1 vs. Swiss-Prot
Match: IDD12_ARATH (Protein indeterminate-domain 12 OS=Arabidopsis thaliana GN=IDD12 PE=2 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 2.6e-85
Identity = 152/190 (80.00%), Postives = 162/190 (85.26%), Query Frame = 1


Query: 10  EEHSPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLH 69
           E H P       KKKR LPGNPDPDAEVIALSPK LL TNRFVCEICNKGFQRDQNLQLH
Sbjct: 48  ETHKP-------KKKRGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLH 107

Query: 70  RRGHNLPWKLKQRSNKEV-RKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWK 129
           RRGHNLPWKLKQ++ KE  +KKVYVCPE  C HHHPSRALGDLTGIKKHFCRKHGEKKWK
Sbjct: 108 RRGHNLPWKLKQKNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWK 167

Query: 130 CEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNF--- 189
           CEKCSK YAVQSDWKAH+KICGTR+YRCDCGTLFSR+D+FITHRAFCDALA+ES      
Sbjct: 168 CEKCSKFYAVQSDWKAHTKICGTRDYRCDCGTLFSRKDTFITHRAFCDALAEESARLHST 227

Query: 190 ASSAMNNSNP 196
           +SS + N NP
Sbjct: 228 SSSNLTNPNP 230

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BLAST of CmoCh01G017800.1 vs. Swiss-Prot
Match: IDD1_ARATH (Protein indeterminate-domain 1 OS=Arabidopsis thaliana GN=IDD1 PE=1 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.6e-85
Identity = 157/213 (73.71%), Postives = 172/213 (80.75%), Query Frame = 1


Query: 17  PPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLP 76
           P    KKKRNLPG PDPDAEVIALSPK L+ TNRFVCEICNKGFQRDQNLQLHRRGHNLP
Sbjct: 27  PKSVGKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLP 86

Query: 77  WKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRY 136
           WKL+QRS KEVRKKVYVCP   CVHH PSRALGDLTGIKKHFCRKHGEKKWKCEKCSK+Y
Sbjct: 87  WKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKY 146

Query: 137 AVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPI 196
           AVQSDWKAHSKICGT+EY+CDCGTLFSRRDSFITHRAFCDALA+E      SA N++   
Sbjct: 147 AVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEE------SAKNHTQSK 206

Query: 197 QPIFSTLRQFPLKTENQDPFYPSTSNILNPFNP 230
           +    T+ +   + E + P    +S  L P +P
Sbjct: 207 KLYPETVTRKNPEIEQKSPAAVESSPSLPPSSP 233

[Close]

BLAST of CmoCh01G017800.1 vs. TrEMBL
Match: A0A0A0L2R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646130 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 5.3e-117
Identity = 245/371 (66.04%), Postives = 267/371 (71.97%), Query Frame = 1


Query: 14  PPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGH 73
           P PPPPPSKKKRNLPGNPDP+AEVIALSPK+LL TNRF+CEIC KGFQRDQNLQLHRRGH
Sbjct: 55  PLPPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGH 114

Query: 74  NLPWKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCS 133
           NLPWKLKQR NKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCS
Sbjct: 115 NLPWKLKQRGNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCS 174

Query: 134 KRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNS 193
           KRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFC+ALAQESTNF      NS
Sbjct: 175 KRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNF------NS 234

Query: 194 NPIQPIFSTL---RQFPLKTENQDPFYPSTSNILNPFNPNHNPNPT-SIGFGLAGPGSSL 253
           NP   I S L     FPLK E+QDPF+P       P +  +  NPT SIGFGL  PG   
Sbjct: 235 NPTPKITSHLFPSINFPLKFEHQDPFFPPPPPPPPPPSHQNPNNPTSSIGFGL--PGLGP 294

Query: 254 NPVFGS---AWEMNSPN--------------MMAFEE-PSFEEALNGILM--NNRANKDG 313
             +F S   AWE+N+ N              M+ FEE  SFEEALNGILM  +NR NK+ 
Sbjct: 295 GHLFASSCPAWEVNNNNNNSCSAEIAPFFHHMVGFEEAASFEEALNGILMSNSNRGNKN- 354

Query: 314 DKCSGGGGGSGGGAEEITRDLLGLRALARQPDQRMFEN---EIVNDSLNLGSSSSMFGLH 358
                 GG  GG A EITRD LG     R  D  MF+N   +++N+ ++   S S FG+H
Sbjct: 355 ------GGKGGGAAGEITRDFLG---GLRPVDSSMFQNHDHQMINNDMSNLDSPSTFGVH 406

[Close]

BLAST of CmoCh01G017800.1 vs. TrEMBL
Match: M1AER7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008205 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 9.1e-93
Identity = 180/287 (62.72%), Postives = 206/287 (71.78%), Query Frame = 1


Query: 18  PPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPW 77
           PPP+KKKRNLPGNPDP+AEV+ALSP++LL TNRFVCEICNKGFQRDQNLQLHRRGHNLPW
Sbjct: 47  PPPNKKKRNLPGNPDPEAEVVALSPRSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 106

Query: 78  KLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 137
           KLKQR+NKEV+KKVYVCPE +CVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA
Sbjct: 107 KLKQRTNKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 166

Query: 138 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQ 197
           VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDAL +ES+       N+S    
Sbjct: 167 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALTEESSRTIIPPPNSSTSHH 226

Query: 198 PIFSTLRQFPLKTENQDPFYPSTSNILNPFNPNHNPNPTSIGFGLAGPGSSLNPVFGSAW 257
               TL+ F +K E Q     S+   +   NPN N N ++  FG   P  S   +   A 
Sbjct: 227 LNLHTLQNFQMKQEQQQSNDLSSQLFIQ--NPNSNSNSSNNIFGAPPPHMSATALLQKAA 286

Query: 258 EMNSPNMMAFEEPSFEEALNGILMNNRANKDGDKCSGGGGGSGGGAE 305
           ++    + +    +   + N       +       SG G G GGG +
Sbjct: 287 QI---GVTSSSHAANNMSANTFFSPTTSTTTAMAMSGSGAGRGGGGD 328

[Close]

BLAST of CmoCh01G017800.1 vs. TrEMBL
Match: K4CL86_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 6.5e-91
Identity = 179/283 (63.25%), Postives = 203/283 (71.73%), Query Frame = 1


Query: 18  PPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPW 77
           PPP+KKKRNLPGNPDP+AEV+ALSP++LL TNRFVCEICNKGFQRDQNLQLHRRGHNLPW
Sbjct: 48  PPPNKKKRNLPGNPDPEAEVVALSPRSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 107

Query: 78  KLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 137
           KLKQRSNKEV+KKVYVCPE +CVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA
Sbjct: 108 KLKQRSNKEVKKKVYVCPEASCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 167

Query: 138 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQ 197
           VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDAL +ES+       N+S    
Sbjct: 168 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALTEESSRTIIPPPNSSTSHH 227

Query: 198 PIFSTLRQFPLKTENQDPFYPSTSNILNPFNPNHNPNPTSIGFGLAGPGSSLNPVFGSAW 257
               TL+ F +K E Q      +S +    NPN N   +S  FG   P  S   +   A 
Sbjct: 228 LNLHTLQNFQMKQEQQQQNNDLSSQLFIQ-NPNGN---SSNMFGAPPPHMSATALLQKAA 287

Query: 258 EMNSPNMMAFEEPSFEEALNGILMNNRANKDGDKCSGGGGGSG 301
           ++    + +    +   +         +   G   SG G G+G
Sbjct: 288 QI---GVTSSSHTANNMSATTFFSPTTSTTTGIAMSGSGSGAG 323

[Close]

BLAST of CmoCh01G017800.1 vs. TrEMBL
Match: M5XYL2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004359mg PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.5e-90
Identity = 165/200 (82.50%), Postives = 178/200 (89.00%), Query Frame = 1


Query: 8   TAEEHSPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQ 67
           +A +   P  PPP KKKRNLPGNPDPDAEVIALSPK+L+ TNRF+CEICNKGFQR+QNLQ
Sbjct: 36  SANDIQQPQQPPPPKKKRNLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQREQNLQ 95

Query: 68  LHRRGHNLPWKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKW 127
           LHRRGHNLPWKLKQR+NKEVRKKVY+CPE TCVHH PSRALGDLTGIKKHFCRKHGEKKW
Sbjct: 96  LHRRGHNLPWKLKQRTNKEVRKKVYLCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKW 155

Query: 128 KCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFAS 187
           KCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQE  N  S
Sbjct: 156 KCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQE--NSTS 215

Query: 188 SAMNNSNP--IQPIFSTLRQ 206
           +A  ++ P  I P+ S+L Q
Sbjct: 216 TAARSAMPASINPLLSSLPQ 233

[Close]

BLAST of CmoCh01G017800.1 vs. TrEMBL
Match: A0A0S3SRW8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G231600 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.9e-90
Identity = 172/261 (65.90%), Postives = 200/261 (76.63%), Query Frame = 1


Query: 15  PPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHN 74
           P  P   KKKRNLPGNPDPDAEVIALSPK LL TNRFVCEICNKGFQRDQNLQLHRRGHN
Sbjct: 37  PQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHN 96

Query: 75  LPWKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK 134
           LPWKLKQR+NKEV+KK YVCPE +CVHH+PSRALGDLTGIKKH+CRKHGEKKWKCEKCSK
Sbjct: 97  LPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSK 156

Query: 135 RYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSN 194
            YAVQSDWKAHSK CGTREYRCDCGTLFSR+DSFITHRAFCDALA+ES   +++ +  S 
Sbjct: 157 IYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATST 216

Query: 195 PIQPIFSTLRQFPLKTENQDPFYPSTSNILNPFNPNHNPN--PTSIGFGLAGPGSSLNPV 254
              P+  +L  FP +  N +    +T+N +NP++PN NP+  PT      +   +   P+
Sbjct: 217 -TNPLVQSLFLFPTQQHNNNNI--NTTNFINPWDPNPNPSNLPTLHNAIKSESHNFHTPI 276

Query: 255 FGSAWEMN---SPNMMAFEEP 271
           F +    N   SP+++    P
Sbjct: 277 FSTTTNNNNISSPSLLLHHPP 294

[Close]

BLAST of CmoCh01G017800.1 vs. TAIR10
Match: AT1G03840.1 (AT1G03840.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 325.9 bits (834), Expect = 3.2e-89
Identity = 176/279 (63.08%), Postives = 199/279 (71.33%), Query Frame = 1


Query: 18  PPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPW 77
           PP  KKKRNLPGNPDP+AEVIALSPK L+ TNRF+CEIC KGFQRDQNLQLHRRGHNLPW
Sbjct: 37  PPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPW 96

Query: 78  KLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 137
           KLKQR++KEVRK+VYVCPE +CVHHHP+RALGDLTGIKKHFCRKHGEKKWKCEKC+KRYA
Sbjct: 97  KLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYA 156

Query: 138 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQEST---------NFASS 197
           VQSDWKAHSK CGTREYRCDCGT+FSRRDSFITHRAFCDALA+E+          +FA++
Sbjct: 157 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAAT 216

Query: 198 AMNNSN-----------------------PIQPIFSTLRQFPLKTEN---QDPFYP-STS 257
           A +N N                       P QP      QFP+ T N   QD   P ST 
Sbjct: 217 AGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPASTL 276

[Close]

BLAST of CmoCh01G017800.1 vs. TAIR10
Match: AT3G50700.1 (AT3G50700.1 indeterminate(ID)-domain 2)

HSP 1 Score: 321.2 bits (822), Expect = 7.9e-88
Identity = 149/190 (78.42%), Postives = 167/190 (87.89%), Query Frame = 1


Query: 6   NLTAEEHSPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQN 65
           ++++  +  P P    KKKRNLPG PDP++EVIALSPK LL TNRFVCEICNKGFQRDQN
Sbjct: 18  SISSTGNQNPLPNSTGKKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQN 77

Query: 66  LQLHRRGHNLPWKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEK 125
           LQLHRRGHNLPWKL+Q+SNKEV+KKVYVCPE++CVHH PSRALGDLTGIKKHFCRKHGEK
Sbjct: 78  LQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEK 137

Query: 126 KWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNF 185
           KWKC+KCSK+YAVQSDWKAHSKICGT+EY+CDCGTLFSRRDSFITHRAFCDALA+E+   
Sbjct: 138 KWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENARS 197

Query: 186 ASSAMNNSNP 196
             S     NP
Sbjct: 198 HHSQSKKQNP 207

[Close]

BLAST of CmoCh01G017800.1 vs. TAIR10
Match: AT5G44160.1 (AT5G44160.1 C2H2-like zinc finger protein)

HSP 1 Score: 317.8 bits (813), Expect = 8.7e-87
Identity = 144/165 (87.27%), Postives = 155/165 (93.94%), Query Frame = 1


Query: 18  PPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPW 77
           PP  KKKRNLPGNPDP+AEVIALSP  L+ TNRF+CE+C KGFQRDQNLQLHRRGHNLPW
Sbjct: 33  PPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPW 92

Query: 78  KLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 137
           KLKQR++KEVRK+VYVCPE TCVHHH SRALGDLTGIKKHFCRKHGEKKW CEKC+KRYA
Sbjct: 93  KLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYA 152

Query: 138 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQES 183
           VQSDWKAHSK CGTREYRCDCGT+FSRRDSFITHRAFCDALA+E+
Sbjct: 153 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEET 197

[Close]

BLAST of CmoCh01G017800.1 vs. TAIR10
Match: AT5G66730.1 (AT5G66730.1 C2H2-like zinc finger protein)

HSP 1 Score: 317.0 bits (811), Expect = 1.5e-86
Identity = 157/213 (73.71%), Postives = 172/213 (80.75%), Query Frame = 1


Query: 17  PPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLP 76
           P    KKKRNLPG PDPDAEVIALSPK L+ TNRFVCEICNKGFQRDQNLQLHRRGHNLP
Sbjct: 27  PKSVGKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLP 86

Query: 77  WKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRY 136
           WKL+QRS KEVRKKVYVCP   CVHH PSRALGDLTGIKKHFCRKHGEKKWKCEKCSK+Y
Sbjct: 87  WKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKY 146

Query: 137 AVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPI 196
           AVQSDWKAHSKICGT+EY+CDCGTLFSRRDSFITHRAFCDALA+E      SA N++   
Sbjct: 147 AVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEE------SAKNHTQSK 206

Query: 197 QPIFSTLRQFPLKTENQDPFYPSTSNILNPFNP 230
           +    T+ +   + E + P    +S  L P +P
Sbjct: 207 KLYPETVTRKNPEIEQKSPAAVESSPSLPPSSP 233

[Close]

BLAST of CmoCh01G017800.1 vs. TAIR10
Match: AT4G02670.1 (AT4G02670.1 indeterminate(ID)-domain 12)

HSP 1 Score: 317.0 bits (811), Expect = 1.5e-86
Identity = 152/190 (80.00%), Postives = 162/190 (85.26%), Query Frame = 1


Query: 10  EEHSPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLH 69
           E H P       KKKR LPGNPDPDAEVIALSPK LL TNRFVCEICNKGFQRDQNLQLH
Sbjct: 48  ETHKP-------KKKRGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLH 107

Query: 70  RRGHNLPWKLKQRSNKEV-RKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWK 129
           RRGHNLPWKLKQ++ KE  +KKVYVCPE  C HHHPSRALGDLTGIKKHFCRKHGEKKWK
Sbjct: 108 RRGHNLPWKLKQKNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWK 167

Query: 130 CEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNF--- 189
           CEKCSK YAVQSDWKAH+KICGTR+YRCDCGTLFSR+D+FITHRAFCDALA+ES      
Sbjct: 168 CEKCSKFYAVQSDWKAHTKICGTRDYRCDCGTLFSRKDTFITHRAFCDALAEESARLHST 227

Query: 190 ASSAMNNSNP 196
           +SS + N NP
Sbjct: 228 SSSNLTNPNP 230

[Close]

BLAST of CmoCh01G017800.1 vs. NCBI nr
Match: gi|778696624|ref|XP_011654179.1| (PREDICTED: zinc finger protein MAGPIE-like [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 7.6e-117
Identity = 245/371 (66.04%), Postives = 267/371 (71.97%), Query Frame = 1


Query: 14  PPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGH 73
           P PPPPPSKKKRNLPGNPDP+AEVIALSPK+LL TNRF+CEIC KGFQRDQNLQLHRRGH
Sbjct: 55  PLPPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGH 114

Query: 74  NLPWKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCS 133
           NLPWKLKQR NKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCS
Sbjct: 115 NLPWKLKQRGNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCS 174

Query: 134 KRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNS 193
           KRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFC+ALAQESTNF      NS
Sbjct: 175 KRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNF------NS 234

Query: 194 NPIQPIFSTL---RQFPLKTENQDPFYPSTSNILNPFNPNHNPNPT-SIGFGLAGPGSSL 253
           NP   I S L     FPLK E+QDPF+P       P +  +  NPT SIGFGL  PG   
Sbjct: 235 NPTPKITSHLFPSINFPLKFEHQDPFFPPPPPPPPPPSHQNPNNPTSSIGFGL--PGLGP 294

Query: 254 NPVFGS---AWEMNSPN--------------MMAFEE-PSFEEALNGILM--NNRANKDG 313
             +F S   AWE+N+ N              M+ FEE  SFEEALNGILM  +NR NK+ 
Sbjct: 295 GHLFASSCPAWEVNNNNNNSCSAEIAPFFHHMVGFEEAASFEEALNGILMSNSNRGNKN- 354

Query: 314 DKCSGGGGGSGGGAEEITRDLLGLRALARQPDQRMFEN---EIVNDSLNLGSSSSMFGLH 358
                 GG  GG A EITRD LG     R  D  MF+N   +++N+ ++   S S FG+H
Sbjct: 355 ------GGKGGGAAGEITRDFLG---GLRPVDSSMFQNHDHQMINNDMSNLDSPSTFGVH 406

[Close]

BLAST of CmoCh01G017800.1 vs. NCBI nr
Match: gi|659103866|ref|XP_008452730.1| (PREDICTED: zinc finger protein MAGPIE-like [Cucumis melo])

HSP 1 Score: 372.1 bits (954), Expect = 1.1e-99
Identity = 180/211 (85.31%), Postives = 190/211 (90.05%), Query Frame = 1


Query: 15  PPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHN 74
           PP PPPSKKKRNLPGNPDP+AEVIALSPK+LL TNRF+CEIC KGFQRDQNLQLHRRGHN
Sbjct: 55  PPLPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHN 114

Query: 75  LPWKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK 134
           LPWKLKQR NKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK
Sbjct: 115 LPWKLKQRGNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK 174

Query: 135 RYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSN 194
           RYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFC+ALAQESTNF      N+N
Sbjct: 175 RYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNF------NNN 234

Query: 195 PIQPIFSTL---RQFPLKTENQDPFYPSTSN 223
           P   + S L     FPLK E+QDPF+PS+S+
Sbjct: 235 PTPKLTSHLFPSINFPLKFEHQDPFFPSSSS 259

[Close]

BLAST of CmoCh01G017800.1 vs. NCBI nr
Match: gi|698430542|ref|XP_009793158.1| (PREDICTED: zinc finger protein NUTCRACKER-like [Nicotiana sylvestris])

HSP 1 Score: 350.5 bits (898), Expect = 3.4e-93
Identity = 180/252 (71.43%), Postives = 199/252 (78.97%), Query Frame = 1


Query: 17  PPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLP 76
           P P +KKKRNLPGNPDP+AEVIALSPK+LL TNRFVCEICNKGFQRDQNLQLHRRGHNLP
Sbjct: 49  PAPANKKKRNLPGNPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLP 108

Query: 77  WKLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRY 136
           WKLKQR+NKEV+KKVYVCPE +CVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRY
Sbjct: 109 WKLKQRTNKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRY 168

Query: 137 AVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPI 196
           AVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALA+ES    +  +++S+  
Sbjct: 169 AVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAEESVRTTNPLISSSSTS 228

Query: 197 QPI-FSTLRQFPLKTENQDPFYPSTSNILNPFNPNHNPNPTSIGFGLAGP-GSSLNPVFG 256
             +   TL+ F LK E Q     S  N+L    P H  N  S    +  P  SS N +FG
Sbjct: 229 HHLNLHTLQNFQLKQEQQQQL--SNFNLL----PPHPSNELSSQLFIHNPTSSSSNNIFG 288

Query: 257 SAWEMNSPNMMA 267
           +A    S +M A
Sbjct: 289 AAAAATSAHMSA 294

[Close]

BLAST of CmoCh01G017800.1 vs. NCBI nr
Match: gi|970048431|ref|XP_015085741.1| (PREDICTED: protein indeterminate-domain 12-like [Solanum pennellii])

HSP 1 Score: 349.4 bits (895), Expect = 7.6e-93
Identity = 187/294 (63.61%), Postives = 208/294 (70.75%), Query Frame = 1


Query: 18  PPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPW 77
           PPP+KKKRNLPGNPDP+AEV+ALSP++LL TNRFVCEICNKGFQRDQNLQLHRRGHNLPW
Sbjct: 48  PPPNKKKRNLPGNPDPEAEVVALSPRSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 107

Query: 78  KLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 137
           KLKQRSNKEV+KKVYVCPE +CVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA
Sbjct: 108 KLKQRSNKEVKKKVYVCPEASCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 167

Query: 138 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQ 197
           VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDAL +ES+       N+S    
Sbjct: 168 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALTEESSRTIIPPPNSSTSHH 227

Query: 198 PIFSTLRQFPLKTENQDPFYPSTSNILNPFNPNHNPNPTSIGFGLAGPGSSLNP------ 257
               TL+ F +K E Q     S       F  N N N +++ FG   P  S         
Sbjct: 228 LNLHTLQNFQMKQEQQQQQQQSNDLSSQLFIQNPNSNSSNM-FGALPPHMSATALLQKAA 287

Query: 258 ---VFGSAWEMNSPNMMAFEEPSFEEALNGILMNNRANKDGDKCSGGGGGSGGG 303
              V  S+   N+ +   F  P+   A +GI M           SG G G+GGG
Sbjct: 288 QIGVTSSSHTANNMSATTFFSPTTSTA-SGIAM-----------SGSGSGAGGG 328

[Close]

BLAST of CmoCh01G017800.1 vs. NCBI nr
Match: gi|565369908|ref|XP_006351575.1| (PREDICTED: protein indeterminate-domain 12-like [Solanum tuberosum])

HSP 1 Score: 348.6 bits (893), Expect = 1.3e-92
Identity = 180/287 (62.72%), Postives = 206/287 (71.78%), Query Frame = 1


Query: 18  PPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPW 77
           PPP+KKKRNLPGNPDP+AEV+ALSP++LL TNRFVCEICNKGFQRDQNLQLHRRGHNLPW
Sbjct: 47  PPPNKKKRNLPGNPDPEAEVVALSPRSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 106

Query: 78  KLKQRSNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 137
           KLKQR+NKEV+KKVYVCPE +CVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA
Sbjct: 107 KLKQRTNKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 166

Query: 138 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQ 197
           VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDAL +ES+       N+S    
Sbjct: 167 VQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALTEESSRTIIPPPNSSTSHH 226

Query: 198 PIFSTLRQFPLKTENQDPFYPSTSNILNPFNPNHNPNPTSIGFGLAGPGSSLNPVFGSAW 257
               TL+ F +K E Q     S+   +   NPN N N ++  FG   P  S   +   A 
Sbjct: 227 LNLHTLQNFQMKQEQQQSNDLSSQLFIQ--NPNSNSNSSNNIFGAPPPHMSATALLQKAA 286

Query: 258 EMNSPNMMAFEEPSFEEALNGILMNNRANKDGDKCSGGGGGSGGGAE 305
           ++    + +    +   + N       +       SG G G GGG +
Sbjct: 287 QI---GVTSSSHAANNMSANTFFSPTTSTTTAMAMSGSGAGRGGGGD 328

The following BLAST results are available for this feature:

BLAST of CmoCh01G017800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDD3_ARATH	5.7e-88	63.08	Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1	[more]
IDD2_ARATH	1.4e-86	78.42	Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1	[more]
IDD8_ARATH	1.5e-85	87.27	Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1	[more]
IDD12_ARATH	2.6e-85	80.00	Protein indeterminate-domain 12 OS=Arabidopsis thaliana GN=IDD12 PE=2 SV=2	[more]
IDD1_ARATH	2.6e-85	73.71	Protein indeterminate-domain 1 OS=Arabidopsis thaliana GN=IDD1 PE=1 SV=1	[more]

BLAST of CmoCh01G017800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2R7_CUCSA	5.3e-117	66.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646130 PE=4 SV=1	[more]
M1AER7_SOLTU	9.1e-93	62.72	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008205 PE=4 SV=1	[more]
K4CL86_SOLLC	6.5e-91	63.25	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M5XYL2_PRUPE	1.5e-90	82.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004359mg PE=4 SV=1	[more]
A0A0S3SRW8_PHAAN	1.9e-90	65.90	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G231600 PE=...	[more]

BLAST of CmoCh01G017800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03840.1	3.2e-89	63.08	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G50700.1	7.9e-88	78.42	indeterminate(ID)-domain 2	[more]
AT5G44160.1	8.7e-87	87.27	C2H2-like zinc finger protein	[more]
AT5G66730.1	1.5e-86	73.71	C2H2-like zinc finger protein	[more]
AT4G02670.1	1.5e-86	80.00	indeterminate(ID)-domain 12	[more]

BLAST of CmoCh01G017800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696624\|ref\|XP_011654179.1\|	7.6e-117	66.04	PREDICTED: zinc finger protein MAGPIE-like [Cucumis sativus]	[more]
gi\|659103866\|ref\|XP_008452730.1\|	1.1e-99	85.31	PREDICTED: zinc finger protein MAGPIE-like [Cucumis melo]	[more]
gi\|698430542\|ref\|XP_009793158.1\|	3.4e-93	71.43	PREDICTED: zinc finger protein NUTCRACKER-like [Nicotiana sylvestris]	[more]
gi\|970048431\|ref\|XP_015085741.1\|	7.6e-93	63.61	PREDICTED: protein indeterminate-domain 12-like [Solanum pennellii]	[more]
gi\|565369908\|ref\|XP_006351575.1\|	1.3e-92	62.72	PREDICTED: protein indeterminate-domain 12-like [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR013087	Znf_C2H2_type
IPR015880	Zinc finger, C2H2-like
IPR022755	Znf_C2H2_jaz

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G017800	CmoCh01G017800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017800.1	CmoCh01G017800.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017800.1.CDS.3	CmoCh01G017800.1.CDS.3	CDS
CmoCh01G017800.1.CDS.2	CmoCh01G017800.1.CDS.2	CDS
CmoCh01G017800.1.CDS.1	CmoCh01G017800.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017800.1.five_prime_UTR.2	CmoCh01G017800.1.five_prime_UTR.2	five_prime_UTR
CmoCh01G017800.1.five_prime_UTR.1	CmoCh01G017800.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017800.1.exon.4	CmoCh01G017800.1.exon.4	exon
CmoCh01G017800.1.exon.3	CmoCh01G017800.1.exon.3	exon
CmoCh01G017800.1.exon.2	CmoCh01G017800.1.exon.2	exon
CmoCh01G017800.1.exon.1	CmoCh01G017800.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 53..73 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 51..73 score: 10
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 50..73 score: 1.1E-5coord: 115..148 score: 1.
IPR015880	Zinc finger, C2H2-like	SMART	SM00355	c2h2final6	coord: 51..73 score: 0.017coord: 127..147 score: 1
IPR022755	Zinc finger, double-stranded RNA binding	PFAM	PF12171	zf-C2H2_jaz	coord: 51..73 score: 5.
None	No IPR available	PANTHER	PTHR10593	SERINE/THREONINE-PROTEIN KINASE RIO	coord: 323..350 score: 1.7E-150coord: 17..254 score: 1.7E
None	No IPR available	PANTHER	PTHR10593:SF25	SUBFAMILY NOT NAMED	coord: 17..254 score: 1.7E-150coord: 323..350 score: 1.7E
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 49..74 score: 5.5