CmoCh01G017600.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G017600.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	CRG16
Location	Cmo_Chr01 : 13080274 .. 13080827 (+)
Sequence length	183

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTGGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTTGCGCAATCTGCTGAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTGCGTTGGTGCCTTCGTTGCTCTCGTCTTTGGATCTGCACTTAAGGCTTGAGATTTCGATTGGTTCTTTATGCGTTGTGTGATTTTAGCCATTGATGATTCAGTACTGATGCTCGATATCGAGGGTTTTATTGACTATTGTATTGAGTGTATAGGATATGATTTTCGATATTGAGATTAGATTTTATTAGATCCTGCTGGTTTGTATTCATGAATTCATTGTGTGCTATTTCATTGTTGTTTTCTCTCTATATTGACATTATTTGAGTATATAAGTTATTTCAGTTTCCTACTCTGTTTCATGATATTGAAGATCTTCATTTCTTCTTCTCTGTTCCATTTTCTGGTATTGTTGAATTTCTAAGCTGTTTTAATTTATGATATAATTGAAATTAGTGTGTAAAGTAG

mRNA sequence

ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTGGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTTGCGCAATCTGCTGAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTGCGTTGGTGCCTTCGTTGCTCTCTGTGTAAAGTAG

Coding sequence (CDS)

ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTGGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTTGCGCAATCTGCTGAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTGCGTTGGTGCCTTCGTTGCTCTCTGTGTAAAGTAG

Homology

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BLAST of CmoCh01G017600.1 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-14
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 1  MAAVSNASFMALVAVLFAVLSIAVAQSAESPAPAPASPATSVVPSLSFACVGAFVAL 58
          MAAVS  SFMALVAVLFAVLS+AVAQSAESPAP PASPA SVVPSLSFACVGAF+AL
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLAL 57

[Close]

BLAST of CmoCh01G017600.1 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-14
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 1  MAAVSNASFMALVAVLFAVLSIAVAQSAESPAPAPASPATSVVPSLSFACVGAFVAL 58
          MAAVS  SFMALVAVLFAVLS+AVAQSAESPAP PASPA SVVPSLSFACVGAF+AL
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLAL 57

The following BLAST results are available for this feature:

BLAST of CmoCh01G017600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G017600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q96504_CUCSA	4.1e-14	89.47	CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1	[more]

BLAST of CmoCh01G017600.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G017600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1669529\|dbj\|BAA08394.1\|	5.9e-14	89.47	CRG16 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G017600	CmoCh01G017600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017600.1	CmoCh01G017600.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017600.1.exon.1	CmoCh01G017600.1.exon.1	exon
CmoCh01G017600.1.exon.2	CmoCh01G017600.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G017600.1.CDS.1	CmoCh01G017600.1.CDS.1	CDS
CmoCh01G017600.1.CDS.2	CmoCh01G017600.1.CDS.2	CDS