CmoCh01G017600 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G017600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCRG16
LocationCmo_Chr01 : 13080274 .. 13080827 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTGGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTTGCGCAATCTGCTGAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTGCGTTGGTGCCTTCGTTGCTCTCGTCTTTGGATCTGCACTTAAGGCTTGAGATTTCGATTGGTTCTTTATGCGTTGTGTGATTTTAGCCATTGATGATTCAGTACTGATGCTCGATATCGAGGGTTTTATTGACTATTGTATTGAGTGTATAGGATATGATTTTCGATATTGAGATTAGATTTTATTAGATCCTGCTGGTTTGTATTCATGAATTCATTGTGTGCTATTTCATTGTTGTTTTCTCTCTATATTGACATTATTTGAGTATATAAGTTATTTCAGTTTCCTACTCTGTTTCATGATATTGAAGATCTTCATTTCTTCTTCTCTGTTCCATTTTCTGGTATTGTTGAATTTCTAAGCTGTTTTAATTTATGATATAATTGAAATTAGTGTGTAAAGTAG

mRNA sequence

ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTGGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTTGCGCAATCTGCTGAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTGCGTTGGTGCCTTCGTTGCTCTCTGTGTAAAGTAG

Coding sequence (CDS)

ATGGCCGCCGTCTCCAACGCTTCCTTCATGGCTCTTGTGGCTGTTCTGTTCGCTGTACTCTCCATTGCCGTTGCGCAATCTGCTGAGTCTCCTGCTCCGGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTTGCTTGCGTTGGTGCCTTCGTTGCTCTCTGTGTAAAGTAG
BLAST of CmoCh01G017600 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-14
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1

Query: 1  MAAVSNASFMALVAVLFAVLSIAVAQSAESPAPAPASPATSVVPSLSFACVGAFVAL 58
          MAAVS  SFMALVAVLFAVLS+AVAQSAESPAP PASPA SVVPSLSFACVGAF+AL
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLAL 57

BLAST of CmoCh01G017600 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-14
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1

Query: 1  MAAVSNASFMALVAVLFAVLSIAVAQSAESPAPAPASPATSVVPSLSFACVGAFVAL 58
          MAAVS  SFMALVAVLFAVLS+AVAQSAESPAP PASPA SVVPSLSFACVGAF+AL
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLAL 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Q96504_CUCSA4.1e-1489.47CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|1669529|dbj|BAA08394.1|5.9e-1489.47CRG16 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G017600.1CmoCh01G017600.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G017600Carg21745Silver-seed gourdcarcmoB0442
The following gene(s) are paralogous to this gene:

None