CmoCh01G013980.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013980.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr01 : 11004000 .. 11004364 (-)
Sequence length	273

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCCAAAATACGAGAGCCTTATCTCCTCGAGCGTTAATCGATAGGCTGGGAAAGAGCCACACACGCTCACACCCCCATCTCCCTGAAGCCCACCACCAAATTTCTAGCTTCATTGCCTTCAGAACCATATGTTTTCATAACCATCCTCATCCACTGGCGCCTCTTCAAACTCTCGATTCATTTCAAGTCGCATGCGTCAAGAGGTAAGCCATTTCCCACTGCTAATTACCCACTCCTTGTATGTTCTTTTCTACTTCGCTTTTGATTCTTGGAAACTCCATTTTCTTTGCGTTAGATTGAATTCTGGGGTTTCGAAGGGCACTGAACACAGGGCAATTTTGTTTGATGGGTTTGTTTAG

mRNA sequence

ATGGAAATCCAAAATACGAGAGCCTTATCTCCTCGAGCGTTAATCGATAGGCTGGGAAAGAGCCACACACGCTCACACCCCCATCTCCCTGAAGCCCACCACCAAATTTCTAGCTTCATTGCCTTCAGAACCATATGTTTTCATAACCATCCTCATCCACTGGCGCCTCTTCAAACTCTCGATTCATTTCAAGTCGCATGCGTCAAGAGATTGAATTCTGGGGTTTCGAAGGGCACTGAACACAGGGCAATTTTGTTTGATGGGTTTGTTTAG

Coding sequence (CDS)

ATGGAAATCCAAAATACGAGAGCCTTATCTCCTCGAGCGTTAATCGATAGGCTGGGAAAGAGCCACACACGCTCACACCCCCATCTCCCTGAAGCCCACCACCAAATTTCTAGCTTCATTGCCTTCAGAACCATATGTTTTCATAACCATCCTCATCCACTGGCGCCTCTTCAAACTCTCGATTCATTTCAAGTCGCATGCGTCAAGAGATTGAATTCTGGGGTTTCGAAGGGCACTGAACACAGGGCAATTTTGTTTGATGGGTTTGTTTAG

Homology

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BLAST of CmoCh01G013980.1 vs. TrEMBL
Match: A0A0A0L0W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G675250 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 4  QNTRALSPRALIDRLGKSHTRSHPHLPEAHHQISSFIAFRTICFHNHPHPLAPLQTL 61
          +NTR LS + LIDRLGKSHT S  +L +AHHQIS+F AF TICF  H        TL
Sbjct: 8  KNTRTLS-QTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTSSTL 63

[Close]

BLAST of CmoCh01G013980.1 vs. NCBI nr
Match: gi|700200417|gb|KGN55575.1| (hypothetical protein Csa_4G675250 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 4  QNTRALSPRALIDRLGKSHTRSHPHLPEAHHQISSFIAFRTICFHNHPHPLAPLQTL 61
          +NTR LS + LIDRLGKSHT S  +L +AHHQIS+F AF TICF  H        TL
Sbjct: 8  KNTRTLS-QTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTSSTL 63

The following BLAST results are available for this feature:

BLAST of CmoCh01G013980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G013980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0W1_CUCSA	1.5e-07	57.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G675250 PE=4 SV=1	[more]

BLAST of CmoCh01G013980.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G013980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200417\|gb\|KGN55575.1\|	2.1e-07	57.89	hypothetical protein Csa_4G675250 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G013980	CmoCh01G013980	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013980.1	CmoCh01G013980.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013980.1.CDS.2	CmoCh01G013980.1.CDS.2	CDS
CmoCh01G013980.1.CDS.1	CmoCh01G013980.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013980.1.exon.2	CmoCh01G013980.1.exon.2	exon
CmoCh01G013980.1.exon.1	CmoCh01G013980.1.exon.1	exon