CmoCh01G013980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G013980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 11004000 .. 11004364 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCCAAAATACGAGAGCCTTATCTCCTCGAGCGTTAATCGATAGGCTGGGAAAGAGCCACACACGCTCACACCCCCATCTCCCTGAAGCCCACCACCAAATTTCTAGCTTCATTGCCTTCAGAACCATATGTTTTCATAACCATCCTCATCCACTGGCGCCTCTTCAAACTCTCGATTCATTTCAAGTCGCATGCGTCAAGAGGTAAGCCATTTCCCACTGCTAATTACCCACTCCTTGTATGTTCTTTTCTACTTCGCTTTTGATTCTTGGAAACTCCATTTTCTTTGCGTTAGATTGAATTCTGGGGTTTCGAAGGGCACTGAACACAGGGCAATTTTGTTTGATGGGTTTGTTTAG

mRNA sequence

ATGGAAATCCAAAATACGAGAGCCTTATCTCCTCGAGCGTTAATCGATAGGCTGGGAAAGAGCCACACACGCTCACACCCCCATCTCCCTGAAGCCCACCACCAAATTTCTAGCTTCATTGCCTTCAGAACCATATGTTTTCATAACCATCCTCATCCACTGGCGCCTCTTCAAACTCTCGATTCATTTCAAGTCGCATGCGTCAAGAGATTGAATTCTGGGGTTTCGAAGGGCACTGAACACAGGGCAATTTTGTTTGATGGGTTTGTTTAG

Coding sequence (CDS)

ATGGAAATCCAAAATACGAGAGCCTTATCTCCTCGAGCGTTAATCGATAGGCTGGGAAAGAGCCACACACGCTCACACCCCCATCTCCCTGAAGCCCACCACCAAATTTCTAGCTTCATTGCCTTCAGAACCATATGTTTTCATAACCATCCTCATCCACTGGCGCCTCTTCAAACTCTCGATTCATTTCAAGTCGCATGCGTCAAGAGATTGAATTCTGGGGTTTCGAAGGGCACTGAACACAGGGCAATTTTGTTTGATGGGTTTGTTTAG
Homology
[Close]
BLAST of CmoCh01G013980 vs. TrEMBL
Match: A0A0A0L0W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G675250 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 4  QNTRALSPRALIDRLGKSHTRSHPHLPEAHHQISSFIAFRTICFHNHPHPLAPLQTL 61
          +NTR LS + LIDRLGKSHT S  +L +AHHQIS+F AF TICF  H        TL
Sbjct: 8  KNTRTLS-QTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTSSTL 63

[Close]
BLAST of CmoCh01G013980 vs. NCBI nr
Match: gi|700200417|gb|KGN55575.1| (hypothetical protein Csa_4G675250 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 4  QNTRALSPRALIDRLGKSHTRSHPHLPEAHHQISSFIAFRTICFHNHPHPLAPLQTL 61
          +NTR LS + LIDRLGKSHT S  +L +AHHQIS+F AF TICF  H        TL
Sbjct: 8  KNTRTLS-QTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTSSTL 63

The following BLAST results are available for this feature:
BLAST of CmoCh01G013980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G013980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0W1_CUCSA1.5e-0757.89Uncharacterized protein OS=Cucumis sativus GN=Csa_4G675250 PE=4 SV=1[more]
BLAST of CmoCh01G013980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G013980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200417|gb|KGN55575.1|2.1e-0757.89hypothetical protein Csa_4G675250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G013980.1CmoCh01G013980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G013980CmaCh01G013410Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G013980CsaV3_4G037970Cucumber (Chinese Long) v3cmocucB0558
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G013980Cucurbita moschata (Rifu)cmocmoB013
CmoCh01G013980Cucumber (Gy14) v1cgycmoB0726
CmoCh01G013980Cucurbita maxima (Rimu)cmacmoB051
CmoCh01G013980Cucurbita maxima (Rimu)cmacmoB041
CmoCh01G013980Wild cucumber (PI 183967)cmocpiB473
CmoCh01G013980Cucumber (Chinese Long) v2cmocuB469
CmoCh01G013980Melon (DHL92) v3.5.1cmomeB423
CmoCh01G013980Watermelon (Charleston Gray)cmowcgB387
CmoCh01G013980Watermelon (Charleston Gray)cmowcgB391
CmoCh01G013980Watermelon (97103) v1cmowmB456
CmoCh01G013980Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G013980Cucurbita pepo (Zucchini)cmocpeB461
CmoCh01G013980Bottle gourd (USVL1VR-Ls)cmolsiB424
CmoCh01G013980Melon (DHL92) v3.6.1cmomedB487
CmoCh01G013980Silver-seed gourdcarcmoB1400
CmoCh01G013980Cucumber (Chinese Long) v3cmocucB0560
CmoCh01G013980Watermelon (97103) v2cmowmbB437
CmoCh01G013980Wax gourdcmowgoB0612