CmoCh01G010810.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G010810.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lorelei-like-gpi-anchored protein 1
Location	Cmo_Chr01 : 8998167 .. 8998615 (-)
Sequence length	295

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGACTATAAGAAACCCTCTGCCACATTGCTCTCAAGATGATCAAAATGGAGTCCCATCCATGCTCCTCCCTCTTCCTTCTCCTCTTTCTTTCCATACTCTTCGTCCGGGCTTTCACATCAAGTACTTATAAGTTAGCTACTTATGTTCAAATTTATTTGTTCGTTGCTTCAAAATCGGGAGATTTTTGGTCTGATTTCCTTTGTAATTGCAGAGCATATCATTGGATCTACAAGTCTCACCACTCGTACAATTCTTCAAGTCAAAAAAGGTTCGATACAATTATTAGTTTGAGATTTTAATTGTATCAAAACTAAGTAGTGGATGAATGCAGCTTGTCCAGTGAATTTTGAAGTTGCGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTAAATACACAGCCAATCTTTGCTGCTCAGCTCTTGCAGAATTTGCGTGCCCCTAA

mRNA sequence

CAGACTATAAGAAACCCTCTGCCACATTGCTCTCAAGATGATCAAAATGGAGTCCCATCCATGCTCCTCCCTCTTCCTTCTCCTCTTTCTTTCCATACTCTTCGTCCGGGCTTTCACATCAAAGCATATCATTGGATCTACAAGTCTCACCACTCGTACAATTCTTCAAGTCAAAAAAGCTTGTCCAGTGAATTTTGAAGTTGCGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTAAATACACAGCCAATCTTTGCTGCTCAGCTCTTGCAGAATTTGCGTGCCCCTAA

Coding sequence (CDS)

ATGATCAAAATGGAGTCCCATCCATGCTCCTCCCTCTTCCTTCTCCTCTTTCTTTCCATACTCTTCGTCCGGGCTTTCACATCAAAGCATATCATTGGATCTACAAGTCTCACCACTCGTACAATTCTTCAAGTCAAAAAAGCTTGTCCAGTGAATTTTGAAGTTGCGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTAAATACACAGCCAATCTTTGCTGCTCAGCTCTTGCAGAATTTGCGTGCCCCTAA

Homology

[Close]

BLAST of CmoCh01G010810.1 vs. Swiss-Prot
Match: LRE_ARATH (GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.7e-09
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 1


Query: 12 LFLLLFLSILFVRAFTSKHII-----GSTSLTTRTILQVKKACPVNFEVANYTIITSKCK 71
          + L  FL  L V   +S  I        TS++ R +   KK C VNFE  +Y ++T +CK
Sbjct: 4  ILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCK 63

Query: 72 GPKYTANLCCSALAEFACP 86
          GP + A  CCSA  EFACP
Sbjct: 64 GPAFPAKECCSAFKEFACP 82

[Close]

BLAST of CmoCh01G010810.1 vs. TrEMBL
Match: A0A0A0K362_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 47/78 (60.26%), Postives = 52/78 (66.67%), Query Frame = 1


Query: 11 SLFLLLFLSILFV---RAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKG 70
          ++ LL FLS+LF     AF S H   S     R +LQ KKACPVNFE  NYTIITSKCKG
Sbjct: 11 TMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKG 70

Query: 71 PKYTANLCCSALAEFACP 86
          P+Y    CCSAL EFACP
Sbjct: 71 PRYPPKFCCSALKEFACP 88

[Close]

BLAST of CmoCh01G010810.1 vs. TrEMBL
Match: E0CTD1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03800 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 4  MESHPCSSLFLLLFLSILFVRA---FTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTI 63
          M  +PC SL LL  L+ L   A   F S  ++ S   T RT+LQ KK+CPVNFE  NYTI
Sbjct: 1  MAFNPCFSLLLLFLLTCLVTSASSSFISHDVLQSHESTGRTLLQTKKSCPVNFEFLNYTI 60

Query: 64 ITSKCKGPKYTANLCCSALAEFACP 86
          ITS+CKGP+Y+  LCC A  +FACP
Sbjct: 61 ITSQCKGPQYSPKLCCGAFKDFACP 85

[Close]

BLAST of CmoCh01G010810.1 vs. TrEMBL
Match: A0A068V2R6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042234001 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-14
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 4  MESHPCSSLFLLLFLSILFVRAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITS 63
          M S+P   LFL   L  L   ++ S H +  + L  RT+LQ K +CPVNFE  NYTIITS
Sbjct: 1  MGSNPSLMLFLFFLLVGLASSSYISNHALEPSGLRGRTLLQAKASCPVNFEAQNYTIITS 60

Query: 64 KCKGPKYTANLCCSALAEFACP 86
          +CKGP Y+  LCC A  EFACP
Sbjct: 61 QCKGPNYSPKLCCDAFKEFACP 82

[Close]

BLAST of CmoCh01G010810.1 vs. TrEMBL
Match: A2PZD8_IPONI (GPI-anchored protein OS=Ipomoea nil GN=In10 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-14
Identity = 47/82 (57.32%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 9  CSSLFLLLFLSILFVRAFTSKHIIG-----STSLTTRTILQVKKACPVNFEVANYTIITS 68
          C S FLLL LS+     F+S   I      S S T R++LQ KKACPVNFEV NYT+ITS
Sbjct: 8  CLSFFLLLSLSLF--AGFSSSSSISDGVFVSQSSTGRSLLQAKKACPVNFEVQNYTVITS 67

Query: 69 KCKGPKYTANLCCSALAEFACP 86
          +CKGP+Y   LCC A  EFACP
Sbjct: 68 QCKGPQYPPKLCCGAFTEFACP 87

[Close]

BLAST of CmoCh01G010810.1 vs. TrEMBL
Match: A0A022QHV5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014908mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-14
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 9  CSSLFLLLFLSILFVRAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKGP 68
          C SLF  L  S      F S  + GS+ L+ R +LQ KK CPVNFE  NYTIITSKCKGP
Sbjct: 15 CLSLFTSLSAS-----TFISDGVFGSSVLSERRLLQAKKPCPVNFEFQNYTIITSKCKGP 74

Query: 69 KYTANLCCSALAEFACP 86
          +Y  NLCCSA  +F+CP
Sbjct: 75 QYPPNLCCSAFKDFSCP 86

[Close]

BLAST of CmoCh01G010810.1 vs. TAIR10
Match: AT5G56170.1 (AT5G56170.1 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1)

HSP 1 Score: 76.6 bits (187), Expect = 8.0e-15
Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 11 SLFLLLFLSILFV---RAFTSKHIIGSTSLTT-RTILQVKKACPVNFEVANYTIITSKCK 70
          +LF  L LS+L      +F S  +  S SL   R +LQ KK CPVNFE  NYTIITSKCK
Sbjct: 7  ALFFFLLLSVLSSFSSSSFISDGVFESQSLVLGRNLLQTKKTCPVNFEFMNYTIITSKCK 66

Query: 71 GPKYTANLCCSALAEFACP 86
          GPKY    CC A  +FACP
Sbjct: 67 GPKYPPKECCGAFKDFACP 85

[Close]

BLAST of CmoCh01G010810.1 vs. TAIR10
Match: AT4G28280.2 (AT4G28280.2 LORELEI-LIKE-GPI ANCHORED PROTEIN 3)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-13
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 6  SHPCSSLFLLLFLSILFVRAFTSKHIIG-----STSLTTRTILQVKKACPVNFEVANYTI 65
          +H C    L+  LSIL +  F   H I      S   T+R +LQ K  C  +F   NYTI
Sbjct: 4  THHC----LVSLLSILLLSGFAFSHHISLDEFESHPSTSRALLQAKATCKEDFAAKNYTI 63

Query: 66 ITSKCKGPKYTANLCCSALAEFACP 86
          ITSKCKGP Y A +CCSA  +FACP
Sbjct: 64 ITSKCKGPNYPAKVCCSAFKDFACP 84

[Close]

BLAST of CmoCh01G010810.1 vs. TAIR10
Match: AT2G20700.1 (AT2G20700.1 LORELEI-LIKE-GPI ANCHORED PROTEIN 2)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 14 LLLFLSILFVRAFT-SKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKGPKYTA 73
          LL  L I  +  F+ S       + T+R +LQ +  C  +F   NYTIITS+CKGP Y A
Sbjct: 8  LLSLLPIFLLSGFSLSYDEFDGHAATSRALLQTRTTCKEDFANKNYTIITSRCKGPNYPA 67

Query: 74 NLCCSALAEFACP 86
          N+CCSA  +FACP
Sbjct: 68 NVCCSAFKDFACP 80

[Close]

BLAST of CmoCh01G010810.1 vs. TAIR10
Match: AT4G26466.1 (AT4G26466.1 lorelei)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-10
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 1


Query: 12 LFLLLFLSILFVRAFTSKHII-----GSTSLTTRTILQVKKACPVNFEVANYTIITSKCK 71
          + L  FL  L V   +S  I        TS++ R +   KK C VNFE  +Y ++T +CK
Sbjct: 4  ILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCK 63

Query: 72 GPKYTANLCCSALAEFACP 86
          GP + A  CCSA  EFACP
Sbjct: 64 GPAFPAKECCSAFKEFACP 82

[Close]

BLAST of CmoCh01G010810.1 vs. NCBI nr
Match: gi|449443998|ref|XP_004139762.1| (PREDICTED: GPI-anchored protein LORELEI [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 47/78 (60.26%), Postives = 52/78 (66.67%), Query Frame = 1


Query: 11 SLFLLLFLSILFV---RAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKG 70
          ++ LL FLS+LF     AF S H   S     R +LQ KKACPVNFE  NYTIITSKCKG
Sbjct: 11 TMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKG 70

Query: 71 PKYTANLCCSALAEFACP 86
          P+Y    CCSAL EFACP
Sbjct: 71 PRYPPKFCCSALKEFACP 88

[Close]

BLAST of CmoCh01G010810.1 vs. NCBI nr
Match: gi|225446345|ref|XP_002272406.1| (PREDICTED: GPI-anchored protein LORELEI [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 4  MESHPCSSLFLLLFLSILFVRA---FTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTI 63
          M  +PC SL LL  L+ L   A   F S  ++ S   T RT+LQ KK+CPVNFE  NYTI
Sbjct: 1  MAFNPCFSLLLLFLLTCLVTSASSSFISHDVLQSHESTGRTLLQTKKSCPVNFEFLNYTI 60

Query: 64 ITSKCKGPKYTANLCCSALAEFACP 86
          ITS+CKGP+Y+  LCC A  +FACP
Sbjct: 61 ITSQCKGPQYSPKLCCGAFKDFACP 85

[Close]

BLAST of CmoCh01G010810.1 vs. NCBI nr
Match: gi|661881619|emb|CDP14779.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 4  MESHPCSSLFLLLFLSILFVRAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITS 63
          M S+P   LFL   L  L   ++ S H +  + L  RT+LQ K +CPVNFE  NYTIITS
Sbjct: 1  MGSNPSLMLFLFFLLVGLASSSYISNHALEPSGLRGRTLLQAKASCPVNFEAQNYTIITS 60

Query: 64 KCKGPKYTANLCCSALAEFACP 86
          +CKGP Y+  LCC A  EFACP
Sbjct: 61 QCKGPNYSPKLCCDAFKEFACP 82

[Close]

BLAST of CmoCh01G010810.1 vs. NCBI nr
Match: gi|124484379|dbj|BAF46300.1| (GPI-anchored protein [Ipomoea nil])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 47/82 (57.32%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 9  CSSLFLLLFLSILFVRAFTSKHIIG-----STSLTTRTILQVKKACPVNFEVANYTIITS 68
          C S FLLL LS+     F+S   I      S S T R++LQ KKACPVNFEV NYT+ITS
Sbjct: 8  CLSFFLLLSLSLF--AGFSSSSSISDGVFVSQSSTGRSLLQAKKACPVNFEVQNYTVITS 67

Query: 69 KCKGPKYTANLCCSALAEFACP 86
          +CKGP+Y   LCC A  EFACP
Sbjct: 68 QCKGPQYPPKLCCGAFTEFACP 87

[Close]

BLAST of CmoCh01G010810.1 vs. NCBI nr
Match: gi|848897483|ref|XP_012848826.1| (PREDICTED: GPI-anchored protein LORELEI-like [Erythranthe guttata])

HSP 1 Score: 85.1 bits (209), Expect = 6.4e-14
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 9  CSSLFLLLFLSILFVRAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKGP 68
          C SLF  L  S      F S  + GS+ L+ R +LQ KK CPVNFE  NYTIITSKCKGP
Sbjct: 15 CLSLFTSLSAS-----TFISDGVFGSSVLSERRLLQAKKPCPVNFEFQNYTIITSKCKGP 74

Query: 69 KYTANLCCSALAEFACP 86
          +Y  NLCCSA  +F+CP
Sbjct: 75 QYPPNLCCSAFKDFSCP 86

The following BLAST results are available for this feature:

BLAST of CmoCh01G010810.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRE_ARATH	4.7e-09	41.77	GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1	[more]

BLAST of CmoCh01G010810.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K362_CUCSA	1.8e-15	60.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1	[more]
E0CTD1_VITVI	1.8e-15	54.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03800 PE=4 SV=...	[more]
A0A068V2R6_COFCA	1.5e-14	52.44	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042234001 PE=4 SV=1	[more]
A2PZD8_IPONI	3.4e-14	57.32	GPI-anchored protein OS=Ipomoea nil GN=In10 PE=2 SV=1	[more]
A0A022QHV5_ERYGU	4.5e-14	57.14	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014908mg PE=4 SV=1	[more]

BLAST of CmoCh01G010810.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56170.1	8.0e-15	54.43	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1	[more]
AT4G28280.2	2.6e-13	47.06	LORELEI-LIKE-GPI ANCHORED PROTEIN 3	[more]
AT2G20700.1	3.2e-11	46.58	LORELEI-LIKE-GPI ANCHORED PROTEIN 2	[more]
AT4G26466.1	2.7e-10	41.77	lorelei	[more]

BLAST of CmoCh01G010810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443998\|ref\|XP_004139762.1\|	2.6e-15	60.26	PREDICTED: GPI-anchored protein LORELEI [Cucumis sativus]	[more]
gi\|225446345\|ref\|XP_002272406.1\|	2.6e-15	54.12	PREDICTED: GPI-anchored protein LORELEI [Vitis vinifera]	[more]
gi\|661881619\|emb\|CDP14779.1\|	2.2e-14	52.44	unnamed protein product [Coffea canephora]	[more]
gi\|124484379\|dbj\|BAF46300.1\|	4.9e-14	57.32	GPI-anchored protein [Ipomoea nil]	[more]
gi\|848897483\|ref\|XP_012848826.1\|	6.4e-14	57.14	PREDICTED: GPI-anchored protein LORELEI-like [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031410	cytoplasmic vesicle
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G010810	CmoCh01G010810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G010810.1	CmoCh01G010810.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G010810.1.CDS.3	CmoCh01G010810.1.CDS.3	CDS
CmoCh01G010810.1.CDS.2	CmoCh01G010810.1.CDS.2	CDS
CmoCh01G010810.1.CDS.1	CmoCh01G010810.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G010810.1.five_prime_UTR.1	CmoCh01G010810.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G010810.1.exon.3	CmoCh01G010810.1.exon.3	exon
CmoCh01G010810.1.exon.2	CmoCh01G010810.1.exon.2	exon
CmoCh01G010810.1.exon.1	CmoCh01G010810.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31533	FAMILY NOT NAMED	coord: 1..85 score: 8.2
None	No IPR available	PANTHER	PTHR31533:SF2	GPI-ANCHORED PROTEIN LORELEI-RELATED	coord: 1..85 score: 8.2