CmoCh01G010810 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G010810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lorelei-like-gpi-anchored protein 1
Location	Cmo_Chr01 : 8998167 .. 8998615 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGACTATAAGAAACCCTCTGCCACATTGCTCTCAAGATGATCAAAATGGAGTCCCATCCATGCTCCTCCCTCTTCCTTCTCCTCTTTCTTTCCATACTCTTCGTCCGGGCTTTCACATCAAGTACTTATAAGTTAGCTACTTATGTTCAAATTTATTTGTTCGTTGCTTCAAAATCGGGAGATTTTTGGTCTGATTTCCTTTGTAATTGCAGAGCATATCATTGGATCTACAAGTCTCACCACTCGTACAATTCTTCAAGTCAAAAAAGGTTCGATACAATTATTAGTTTGAGATTTTAATTGTATCAAAACTAAGTAGTGGATGAATGCAGCTTGTCCAGTGAATTTTGAAGTTGCGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTAAATACACAGCCAATCTTTGCTGCTCAGCTCTTGCAGAATTTGCGTGCCCCTAA

mRNA sequence

CAGACTATAAGAAACCCTCTGCCACATTGCTCTCAAGATGATCAAAATGGAGTCCCATCCATGCTCCTCCCTCTTCCTTCTCCTCTTTCTTTCCATACTCTTCGTCCGGGCTTTCACATCAAAGCATATCATTGGATCTACAAGTCTCACCACTCGTACAATTCTTCAAGTCAAAAAAGCTTGTCCAGTGAATTTTGAAGTTGCGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTAAATACACAGCCAATCTTTGCTGCTCAGCTCTTGCAGAATTTGCGTGCCCCTAA

Coding sequence (CDS)

ATGATCAAAATGGAGTCCCATCCATGCTCCTCCCTCTTCCTTCTCCTCTTTCTTTCCATACTCTTCGTCCGGGCTTTCACATCAAAGCATATCATTGGATCTACAAGTCTCACCACTCGTACAATTCTTCAAGTCAAAAAAGCTTGTCCAGTGAATTTTGAAGTTGCGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTAAATACACAGCCAATCTTTGCTGCTCAGCTCTTGCAGAATTTGCGTGCCCCTAA

Homology

[Close]

BLAST of CmoCh01G010810 vs. Swiss-Prot
Match: LRE_ARATH (GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.7e-09
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 1


Query: 12 LFLLLFLSILFVRAFTSKHII-----GSTSLTTRTILQVKKACPVNFEVANYTIITSKCK 71
          + L  FL  L V   +S  I        TS++ R +   KK C VNFE  +Y ++T +CK
Sbjct: 4  ILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCK 63

Query: 72 GPKYTANLCCSALAEFACP 86
          GP + A  CCSA  EFACP
Sbjct: 64 GPAFPAKECCSAFKEFACP 82

[Close]

BLAST of CmoCh01G010810 vs. TrEMBL
Match: A0A0A0K362_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 47/78 (60.26%), Postives = 52/78 (66.67%), Query Frame = 1


Query: 11 SLFLLLFLSILFV---RAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKG 70
          ++ LL FLS+LF     AF S H   S     R +LQ KKACPVNFE  NYTIITSKCKG
Sbjct: 11 TMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKG 70

Query: 71 PKYTANLCCSALAEFACP 86
          P+Y    CCSAL EFACP
Sbjct: 71 PRYPPKFCCSALKEFACP 88

[Close]

BLAST of CmoCh01G010810 vs. TrEMBL
Match: E0CTD1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03800 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 4  MESHPCSSLFLLLFLSILFVRA---FTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTI 63
          M  +PC SL LL  L+ L   A   F S  ++ S   T RT+LQ KK+CPVNFE  NYTI
Sbjct: 1  MAFNPCFSLLLLFLLTCLVTSASSSFISHDVLQSHESTGRTLLQTKKSCPVNFEFLNYTI 60

Query: 64 ITSKCKGPKYTANLCCSALAEFACP 86
          ITS+CKGP+Y+  LCC A  +FACP
Sbjct: 61 ITSQCKGPQYSPKLCCGAFKDFACP 85

[Close]

BLAST of CmoCh01G010810 vs. TrEMBL
Match: A0A068V2R6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042234001 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-14
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 4  MESHPCSSLFLLLFLSILFVRAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITS 63
          M S+P   LFL   L  L   ++ S H +  + L  RT+LQ K +CPVNFE  NYTIITS
Sbjct: 1  MGSNPSLMLFLFFLLVGLASSSYISNHALEPSGLRGRTLLQAKASCPVNFEAQNYTIITS 60

Query: 64 KCKGPKYTANLCCSALAEFACP 86
          +CKGP Y+  LCC A  EFACP
Sbjct: 61 QCKGPNYSPKLCCDAFKEFACP 82

[Close]

BLAST of CmoCh01G010810 vs. TrEMBL
Match: A2PZD8_IPONI (GPI-anchored protein OS=Ipomoea nil GN=In10 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-14
Identity = 47/82 (57.32%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 9  CSSLFLLLFLSILFVRAFTSKHIIG-----STSLTTRTILQVKKACPVNFEVANYTIITS 68
          C S FLLL LS+     F+S   I      S S T R++LQ KKACPVNFEV NYT+ITS
Sbjct: 8  CLSFFLLLSLSLF--AGFSSSSSISDGVFVSQSSTGRSLLQAKKACPVNFEVQNYTVITS 67

Query: 69 KCKGPKYTANLCCSALAEFACP 86
          +CKGP+Y   LCC A  EFACP
Sbjct: 68 QCKGPQYPPKLCCGAFTEFACP 87

[Close]

BLAST of CmoCh01G010810 vs. TrEMBL
Match: A0A022QHV5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014908mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-14
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 9  CSSLFLLLFLSILFVRAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKGP 68
          C SLF  L  S      F S  + GS+ L+ R +LQ KK CPVNFE  NYTIITSKCKGP
Sbjct: 15 CLSLFTSLSAS-----TFISDGVFGSSVLSERRLLQAKKPCPVNFEFQNYTIITSKCKGP 74

Query: 69 KYTANLCCSALAEFACP 86
          +Y  NLCCSA  +F+CP
Sbjct: 75 QYPPNLCCSAFKDFSCP 86

[Close]

BLAST of CmoCh01G010810 vs. TAIR10
Match: AT5G56170.1 (AT5G56170.1 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1)

HSP 1 Score: 76.6 bits (187), Expect = 8.0e-15
Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 11 SLFLLLFLSILFV---RAFTSKHIIGSTSLTT-RTILQVKKACPVNFEVANYTIITSKCK 70
          +LF  L LS+L      +F S  +  S SL   R +LQ KK CPVNFE  NYTIITSKCK
Sbjct: 7  ALFFFLLLSVLSSFSSSSFISDGVFESQSLVLGRNLLQTKKTCPVNFEFMNYTIITSKCK 66

Query: 71 GPKYTANLCCSALAEFACP 86
          GPKY    CC A  +FACP
Sbjct: 67 GPKYPPKECCGAFKDFACP 85

[Close]

BLAST of CmoCh01G010810 vs. TAIR10
Match: AT4G28280.2 (AT4G28280.2 LORELEI-LIKE-GPI ANCHORED PROTEIN 3)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-13
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 6  SHPCSSLFLLLFLSILFVRAFTSKHIIG-----STSLTTRTILQVKKACPVNFEVANYTI 65
          +H C    L+  LSIL +  F   H I      S   T+R +LQ K  C  +F   NYTI
Sbjct: 4  THHC----LVSLLSILLLSGFAFSHHISLDEFESHPSTSRALLQAKATCKEDFAAKNYTI 63

Query: 66 ITSKCKGPKYTANLCCSALAEFACP 86
          ITSKCKGP Y A +CCSA  +FACP
Sbjct: 64 ITSKCKGPNYPAKVCCSAFKDFACP 84

[Close]

BLAST of CmoCh01G010810 vs. TAIR10
Match: AT2G20700.1 (AT2G20700.1 LORELEI-LIKE-GPI ANCHORED PROTEIN 2)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 14 LLLFLSILFVRAFT-SKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKGPKYTA 73
          LL  L I  +  F+ S       + T+R +LQ +  C  +F   NYTIITS+CKGP Y A
Sbjct: 8  LLSLLPIFLLSGFSLSYDEFDGHAATSRALLQTRTTCKEDFANKNYTIITSRCKGPNYPA 67

Query: 74 NLCCSALAEFACP 86
          N+CCSA  +FACP
Sbjct: 68 NVCCSAFKDFACP 80

[Close]

BLAST of CmoCh01G010810 vs. TAIR10
Match: AT4G26466.1 (AT4G26466.1 lorelei)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-10
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 1


Query: 12 LFLLLFLSILFVRAFTSKHII-----GSTSLTTRTILQVKKACPVNFEVANYTIITSKCK 71
          + L  FL  L V   +S  I        TS++ R +   KK C VNFE  +Y ++T +CK
Sbjct: 4  ILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCK 63

Query: 72 GPKYTANLCCSALAEFACP 86
          GP + A  CCSA  EFACP
Sbjct: 64 GPAFPAKECCSAFKEFACP 82

[Close]

BLAST of CmoCh01G010810 vs. NCBI nr
Match: gi|449443998|ref|XP_004139762.1| (PREDICTED: GPI-anchored protein LORELEI [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 47/78 (60.26%), Postives = 52/78 (66.67%), Query Frame = 1


Query: 11 SLFLLLFLSILFV---RAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKG 70
          ++ LL FLS+LF     AF S H   S     R +LQ KKACPVNFE  NYTIITSKCKG
Sbjct: 11 TMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKG 70

Query: 71 PKYTANLCCSALAEFACP 86
          P+Y    CCSAL EFACP
Sbjct: 71 PRYPPKFCCSALKEFACP 88

[Close]

BLAST of CmoCh01G010810 vs. NCBI nr
Match: gi|225446345|ref|XP_002272406.1| (PREDICTED: GPI-anchored protein LORELEI [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 4  MESHPCSSLFLLLFLSILFVRA---FTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTI 63
          M  +PC SL LL  L+ L   A   F S  ++ S   T RT+LQ KK+CPVNFE  NYTI
Sbjct: 1  MAFNPCFSLLLLFLLTCLVTSASSSFISHDVLQSHESTGRTLLQTKKSCPVNFEFLNYTI 60

Query: 64 ITSKCKGPKYTANLCCSALAEFACP 86
          ITS+CKGP+Y+  LCC A  +FACP
Sbjct: 61 ITSQCKGPQYSPKLCCGAFKDFACP 85

[Close]

BLAST of CmoCh01G010810 vs. NCBI nr
Match: gi|661881619|emb|CDP14779.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 4  MESHPCSSLFLLLFLSILFVRAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITS 63
          M S+P   LFL   L  L   ++ S H +  + L  RT+LQ K +CPVNFE  NYTIITS
Sbjct: 1  MGSNPSLMLFLFFLLVGLASSSYISNHALEPSGLRGRTLLQAKASCPVNFEAQNYTIITS 60

Query: 64 KCKGPKYTANLCCSALAEFACP 86
          +CKGP Y+  LCC A  EFACP
Sbjct: 61 QCKGPNYSPKLCCDAFKEFACP 82

[Close]

BLAST of CmoCh01G010810 vs. NCBI nr
Match: gi|124484379|dbj|BAF46300.1| (GPI-anchored protein [Ipomoea nil])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 47/82 (57.32%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 9  CSSLFLLLFLSILFVRAFTSKHIIG-----STSLTTRTILQVKKACPVNFEVANYTIITS 68
          C S FLLL LS+     F+S   I      S S T R++LQ KKACPVNFEV NYT+ITS
Sbjct: 8  CLSFFLLLSLSLF--AGFSSSSSISDGVFVSQSSTGRSLLQAKKACPVNFEVQNYTVITS 67

Query: 69 KCKGPKYTANLCCSALAEFACP 86
          +CKGP+Y   LCC A  EFACP
Sbjct: 68 QCKGPQYPPKLCCGAFTEFACP 87

[Close]

BLAST of CmoCh01G010810 vs. NCBI nr
Match: gi|848897483|ref|XP_012848826.1| (PREDICTED: GPI-anchored protein LORELEI-like [Erythranthe guttata])

HSP 1 Score: 85.1 bits (209), Expect = 6.4e-14
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 9  CSSLFLLLFLSILFVRAFTSKHIIGSTSLTTRTILQVKKACPVNFEVANYTIITSKCKGP 68
          C SLF  L  S      F S  + GS+ L+ R +LQ KK CPVNFE  NYTIITSKCKGP
Sbjct: 15 CLSLFTSLSAS-----TFISDGVFGSSVLSERRLLQAKKPCPVNFEFQNYTIITSKCKGP 74

Query: 69 KYTANLCCSALAEFACP 86
          +Y  NLCCSA  +F+CP
Sbjct: 75 QYPPNLCCSAFKDFSCP 86

The following BLAST results are available for this feature:

BLAST of CmoCh01G010810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRE_ARATH	4.7e-09	41.77	GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1	[more]

BLAST of CmoCh01G010810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K362_CUCSA	1.8e-15	60.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1	[more]
E0CTD1_VITVI	1.8e-15	54.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03800 PE=4 SV=...	[more]
A0A068V2R6_COFCA	1.5e-14	52.44	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042234001 PE=4 SV=1	[more]
A2PZD8_IPONI	3.4e-14	57.32	GPI-anchored protein OS=Ipomoea nil GN=In10 PE=2 SV=1	[more]
A0A022QHV5_ERYGU	4.5e-14	57.14	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014908mg PE=4 SV=1	[more]

BLAST of CmoCh01G010810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56170.1	8.0e-15	54.43	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1	[more]
AT4G28280.2	2.6e-13	47.06	LORELEI-LIKE-GPI ANCHORED PROTEIN 3	[more]
AT2G20700.1	3.2e-11	46.58	LORELEI-LIKE-GPI ANCHORED PROTEIN 2	[more]
AT4G26466.1	2.7e-10	41.77	lorelei	[more]

BLAST of CmoCh01G010810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443998\|ref\|XP_004139762.1\|	2.6e-15	60.26	PREDICTED: GPI-anchored protein LORELEI [Cucumis sativus]	[more]
gi\|225446345\|ref\|XP_002272406.1\|	2.6e-15	54.12	PREDICTED: GPI-anchored protein LORELEI [Vitis vinifera]	[more]
gi\|661881619\|emb\|CDP14779.1\|	2.2e-14	52.44	unnamed protein product [Coffea canephora]	[more]
gi\|124484379\|dbj\|BAF46300.1\|	4.9e-14	57.32	GPI-anchored protein [Ipomoea nil]	[more]
gi\|848897483\|ref\|XP_012848826.1\|	6.4e-14	57.14	PREDICTED: GPI-anchored protein LORELEI-like [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0090406	pollen tube
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G010810.1	CmoCh01G010810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31533	FAMILY NOT NAMED	coord: 1..85 score: 8.2
None	No IPR available	PANTHER	PTHR31533:SF2	GPI-ANCHORED PROTEIN LORELEI-RELATED	coord: 1..85 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G010810	Lsi02G017850	Bottle gourd (USVL1VR-Ls)	cmolsiB395
CmoCh01G010810	Cp4.1LG02g00250	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G010810	Cp4.1LG06g08050	Cucurbita pepo (Zucchini)	cmocpeB464
CmoCh01G010810	MELO3C013226.2	Melon (DHL92) v3.6.1	cmomedB451
CmoCh01G010810	CsaV3_7G021300	Cucumber (Chinese Long) v3	cmocucB0577
CmoCh01G010810	Cla97C09G183170	Watermelon (97103) v2	cmowmbB497
CmoCh01G010810	Bhi09G001542	Wax gourd	cmowgoB0616
CmoCh01G010810	CsGy7G008870	Cucumber (Gy14) v2	cgybcmoB915
CmoCh01G010810	Carg26616	Silver-seed gourd	carcmoB1384
CmoCh01G010810	Carg23365	Silver-seed gourd	carcmoB0107

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G010810	CmoCh09G010500	Cucurbita moschata (Rifu)	cmocmoB018

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G010810	Silver-seed gourd	carcmoB0093
CmoCh01G010810	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh01G010810	Cucumber (Gy14) v1	cgycmoB0916
CmoCh01G010810	Cucurbita maxima (Rimu)	cmacmoB048
CmoCh01G010810	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G010810	Wild cucumber (PI 183967)	cmocpiB485
CmoCh01G010810	Cucumber (Chinese Long) v2	cmocuB479
CmoCh01G010810	Melon (DHL92) v3.5.1	cmomeB394
CmoCh01G010810	Watermelon (Charleston Gray)	cmowcgB378
CmoCh01G010810	Watermelon (97103) v1	cmowmB404