CmoCh01G008880.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCAGCCATGGCAAGTAGGCTTGAGGAAGAAGCACCCAACCAAATTGGAAATGGTGGAGAAGATCAGAACAAGGAGGAGACTTGGCAGAAGAGAGATAGAGAGTATCTGTTGATAGTAGTAACATTCATGGCAACCGTTGCTTTCCAAGCCGGGGTGAGCCCTCCTGGTGGTGTCTGGCAACAAGACGATAAGAACTCGAGGTATGTAACAATAGAGAGAAGAGATATAAGAAAAAAAAAATCTTATAAATACTCATAAGATGTATGCTCTATTAATATCGATGAATAGAAATGAAAATTATTGTGCTTAATGTTAAATTTTTTTGTGACTAAATTATGTGGGCGCATAAGTATTGTAGCTGGGACATCGATAATGGCCACAAAATTCCCAGCTGAGTTCACCACATTCGTCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAATTTATAGTGCTGTTTGTTGAGTTGCCAAGCGACACACCCTCACTTTCGAGGAAATATCTGTACTACACTTTGTTCTTCGCATTAGGCAGCATGCTCTCGTCTTATGTATCATCGGTAAAAGCTTATACGCCGGAGTCGATGAGAACCCAGACCATCACTGTTCTTGCTCTTACTATTGGAATTGGTGTTGTTTTAGTGGGGATTTCATTGTTCAAACAGAAGATACAGCAGAAATGTATGCGTTAACTGTTCAGTGGACAATATCATGAGAGCTTAAGCTCAAAGTGGACAATATCATACCATTGTGGATAGTTGTGTTCATCCAACACAAAGCAGGTCTCGAAGAACAAGCACCCCAACACATGGCCCAAAGCCTATGTGTTTGTCAAACCAGGTTCTTGAAAAAATTCTTAGGGCGAGCTACAACCTATCTAACTTCACCTTCTTACCTTGGTTCTTGCACAAATTCTTCAAGAATGGATTAAAGCTCTTGTATTATCATATGTATGAGAATTTGGCACCTACGCATATGTATTCAAACACATTGAAGGCAC CTCAGCCATGGCAAGTAGGCTTGAGGAAGAAGCACCCAACCAAATTGGAAATGGTGGAGAAGATCAGAACAAGGAGGAGACTTGGCAGAAGAGAGATAGAGAGTATCTGTTGATAGTAGTAACATTCATGGCAACCGTTGCTTTCCAAGCCGGGGTGAGCCCTCCTGGTGGTGTCTGGCAACAAGACGATAAGAACTCGAGTATTGTAGCTGGGACATCGATAATGGCCACAAAATTCCCAGCTGAGTTCACCACATTCGTCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAATTTATAGTGCTGTTTGTTGAGTTGCCAAGCGACACACCCTCACTTTCGAGGAAATATCTGTACTACACTTTGTTCTTCGCATTAGGCAGCATGCTCTCGTCTTATGTATCATCGGTAAAAGCTTATACGCCGGAGTCGATGAGAACCCAGACCATCACTGTTCTTGCTCTTACTATTGGAATTGGTGTTGTTTTAGTGGGGATTTCATTGTTCAAACAGAAGATACAGCAGAAATGTATGCGTTAACTGTTCAGTGGACAATATCATGAGAGCTTAAGCTCAAAGTGGACAATATCATACCATTGTGGATAGTTGTGTTCATCCAACACAAAGCAGGTCTCGAAGAACAAGCACCCCAACACATGGCCCAAAGCCTATGTGTTTGTCAAACCAGGTTCTTGAAAAAATTCTTAGGGCGAGCTACAACCTATCTAACTTCACCTTCTTACCTTGGTTCTTGCACAAATTCTTCAAGAATGGATTAAAGCTCTTGTATTATCATATGTATGAGAATTTGGCACCTACGCATATGTATTCAAACACATTGAAGGCAC ATGGCAAGTAGGCTTGAGGAAGAAGCACCCAACCAAATTGGAAATGGTGGAGAAGATCAGAACAAGGAGGAGACTTGGCAGAAGAGAGATAGAGAGTATCTGTTGATAGTAGTAACATTCATGGCAACCGTTGCTTTCCAAGCCGGGGTGAGCCCTCCTGGTGGTGTCTGGCAACAAGACGATAAGAACTCGAGTATTGTAGCTGGGACATCGATAATGGCCACAAAATTCCCAGCTGAGTTCACCACATTCGTCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAATTTATAGTGCTGTTTGTTGAGTTGCCAAGCGACACACCCTCACTTTCGAGGAAATATCTGTACTACACTTTGTTCTTCGCATTAGGCAGCATGCTCTCGTCTTATGTATCATCGGTAAAAGCTTATACGCCGGAGTCGATGAGAACCCAGACCATCACTGTTCTTGCTCTTACTATTGGAATTGGTGTTGTTTTAGTGGGGATTTCATTGTTCAAACAGAAGATACAGCAGAAATGTATGCGTTAA
BLAST of CmoCh01G008880.1 vs. TrEMBL
Match: A0A0A0KFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 9.0e-25 Identity = 72/172 (41.86%), Postives = 107/172 (62.21%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. TrEMBL
Match: A0A0A0KGU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24 Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. TrEMBL
Match: A0A0A0KIL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16 Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. TrEMBL
Match: A0A059C7J5_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E02804 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.2e-10 Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. TrEMBL
Match: A0A022PZK1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018263mg PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10 Identity = 52/164 (31.71%), Postives = 90/164 (54.88%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. NCBI nr
Match: gi|449452917|ref|XP_004144205.1| (PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus]) HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24 Identity = 72/172 (41.86%), Postives = 107/172 (62.21%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. NCBI nr
Match: gi|778715279|ref|XP_011657373.1| (PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus]) HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24 Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. NCBI nr
Match: gi|659089467|ref|XP_008445524.1| (PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo]) HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24 Identity = 71/173 (41.04%), Postives = 109/173 (63.01%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. NCBI nr
Match: gi|659089597|ref|XP_008445596.1| (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo]) HSP 1 Score: 119.0 bits (297), Expect = 8.4e-24 Identity = 68/160 (42.50%), Postives = 101/160 (63.12%), Query Frame = 1
BLAST of CmoCh01G008880.1 vs. NCBI nr
Match: gi|449452915|ref|XP_004144204.1| (PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus]) HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16 Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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