CmoCh01G008880 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G008880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionAnkyrin repeat family protein, putative
LocationCmo_Chr01 : 4846164 .. 4847168 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAGCCATGGCAAGTAGGCTTGAGGAAGAAGCACCCAACCAAATTGGAAATGGTGGAGAAGATCAGAACAAGGAGGAGACTTGGCAGAAGAGAGATAGAGAGTATCTGTTGATAGTAGTAACATTCATGGCAACCGTTGCTTTCCAAGCCGGGGTGAGCCCTCCTGGTGGTGTCTGGCAACAAGACGATAAGAACTCGAGGTATGTAACAATAGAGAGAAGAGATATAAGAAAAAAAAAATCTTATAAATACTCATAAGATGTATGCTCTATTAATATCGATGAATAGAAATGAAAATTATTGTGCTTAATGTTAAATTTTTTTGTGACTAAATTATGTGGGCGCATAAGTATTGTAGCTGGGACATCGATAATGGCCACAAAATTCCCAGCTGAGTTCACCACATTCGTCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAATTTATAGTGCTGTTTGTTGAGTTGCCAAGCGACACACCCTCACTTTCGAGGAAATATCTGTACTACACTTTGTTCTTCGCATTAGGCAGCATGCTCTCGTCTTATGTATCATCGGTAAAAGCTTATACGCCGGAGTCGATGAGAACCCAGACCATCACTGTTCTTGCTCTTACTATTGGAATTGGTGTTGTTTTAGTGGGGATTTCATTGTTCAAACAGAAGATACAGCAGAAATGTATGCGTTAACTGTTCAGTGGACAATATCATGAGAGCTTAAGCTCAAAGTGGACAATATCATACCATTGTGGATAGTTGTGTTCATCCAACACAAAGCAGGTCTCGAAGAACAAGCACCCCAACACATGGCCCAAAGCCTATGTGTTTGTCAAACCAGGTTCTTGAAAAAATTCTTAGGGCGAGCTACAACCTATCTAACTTCACCTTCTTACCTTGGTTCTTGCACAAATTCTTCAAGAATGGATTAAAGCTCTTGTATTATCATATGTATGAGAATTTGGCACCTACGCATATGTATTCAAACACATTGAAGGCAC

mRNA sequence

CTCAGCCATGGCAAGTAGGCTTGAGGAAGAAGCACCCAACCAAATTGGAAATGGTGGAGAAGATCAGAACAAGGAGGAGACTTGGCAGAAGAGAGATAGAGAGTATCTGTTGATAGTAGTAACATTCATGGCAACCGTTGCTTTCCAAGCCGGGGTGAGCCCTCCTGGTGGTGTCTGGCAACAAGACGATAAGAACTCGAGTATTGTAGCTGGGACATCGATAATGGCCACAAAATTCCCAGCTGAGTTCACCACATTCGTCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAATTTATAGTGCTGTTTGTTGAGTTGCCAAGCGACACACCCTCACTTTCGAGGAAATATCTGTACTACACTTTGTTCTTCGCATTAGGCAGCATGCTCTCGTCTTATGTATCATCGGTAAAAGCTTATACGCCGGAGTCGATGAGAACCCAGACCATCACTGTTCTTGCTCTTACTATTGGAATTGGTGTTGTTTTAGTGGGGATTTCATTGTTCAAACAGAAGATACAGCAGAAATGTATGCGTTAACTGTTCAGTGGACAATATCATGAGAGCTTAAGCTCAAAGTGGACAATATCATACCATTGTGGATAGTTGTGTTCATCCAACACAAAGCAGGTCTCGAAGAACAAGCACCCCAACACATGGCCCAAAGCCTATGTGTTTGTCAAACCAGGTTCTTGAAAAAATTCTTAGGGCGAGCTACAACCTATCTAACTTCACCTTCTTACCTTGGTTCTTGCACAAATTCTTCAAGAATGGATTAAAGCTCTTGTATTATCATATGTATGAGAATTTGGCACCTACGCATATGTATTCAAACACATTGAAGGCAC

Coding sequence (CDS)

ATGGCAAGTAGGCTTGAGGAAGAAGCACCCAACCAAATTGGAAATGGTGGAGAAGATCAGAACAAGGAGGAGACTTGGCAGAAGAGAGATAGAGAGTATCTGTTGATAGTAGTAACATTCATGGCAACCGTTGCTTTCCAAGCCGGGGTGAGCCCTCCTGGTGGTGTCTGGCAACAAGACGATAAGAACTCGAGTATTGTAGCTGGGACATCGATAATGGCCACAAAATTCCCAGCTGAGTTCACCACATTCGTCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAATTTATAGTGCTGTTTGTTGAGTTGCCAAGCGACACACCCTCACTTTCGAGGAAATATCTGTACTACACTTTGTTCTTCGCATTAGGCAGCATGCTCTCGTCTTATGTATCATCGGTAAAAGCTTATACGCCGGAGTCGATGAGAACCCAGACCATCACTGTTCTTGCTCTTACTATTGGAATTGGTGTTGTTTTAGTGGGGATTTCATTGTTCAAACAGAAGATACAGCAGAAATGTATGCGTTAA
BLAST of CmoCh01G008880 vs. TrEMBL
Match: A0A0A0KFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.0e-25
Identity = 72/172 (41.86%), Postives = 107/172 (62.21%), Query Frame = 1

Query: 1   MASRLEEEAPNQIGNGGEDQNKEETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQD 60
           MASR+EE+            + E+T QK D E L++++TF+ T++FQAG +PPGGVWQ+ 
Sbjct: 1   MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60

Query: 61  DKNSSIVAGTSIMATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVELPSDTPSLSRKYLYY 120
            +     AG SIMA+K P++F  F+VGVTV M++S  Q + L  ELP +  S SR ++Y 
Sbjct: 61  PE-----AGKSIMASKNPSQFVVFIVGVTVGMVLSAAQLLTLMNELPYNKLSDSRNFIYC 120

Query: 121 TLFFALGSMLSSYVSSVKAYTPESMRTQTITVLALTIGIGVVLVGISLFKQK 173
           +L   + ++  +Y SS+ A TP SM  +   VL   + IGVV+V I ++ QK
Sbjct: 121 SLGITITALGFAYWSSLTALTPSSMILEVRIVLITELSIGVVIVAIIVYIQK 167

BLAST of CmoCh01G008880 vs. TrEMBL
Match: A0A0A0KGU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = 1

Query: 17  GEDQNK---EETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQDDKNSSIVAGTSIM 76
           G ++NK      W + D ++L++V TF+ATVAFQ G +PPGGVWQ+DDK     AG SIM
Sbjct: 23  GHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIM 82

Query: 77  ATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVE---LPSDTPSLSRKYLYYTLFFALGSML 136
           ATK P++F  F+V +T C + S +QF VLF++   + +   S SR  LY T+  A+ SM 
Sbjct: 83  ATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRFILYSTMGLAVSSMG 142

Query: 137 SSYVSSVKAYTPESMRTQTITVLALT-IGIGVVLVGISLFKQ 172
            +Y  SV+AYTP+S       +  +T +G  + L  IS++ Q
Sbjct: 143 FAYGCSVRAYTPDSEENTLFVISFITMLGFPISLAAISIYLQ 184

BLAST of CmoCh01G008880 vs. TrEMBL
Match: A0A0A0KIL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 1

Query: 15  NGGEDQNKEETWQKR-DREYLLIVVTFMATVAFQAGVSPPGGVWQQDDKNSSIVAGTSIM 74
           N  + + K   W K  D +++++VVTF+A VAFQ G++PPG VWQ+D   +   AG SIM
Sbjct: 22  NKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPPGSVWQED--KNGFTAGKSIM 81

Query: 75  ATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVELPSDTPSLSRKYLYYTLFFALGSMLSSY 134
           A+K P+E+  F+ GVT+C+  S++Q  V+       + S+ R  +Y  +   +  M+ S+
Sbjct: 82  ASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRRMIMYILMLCTIAPMIVSF 141

Query: 135 VSSVKAYTPESMRTQTITVLALTIGIGVVLVGISL 169
            +SVKA TP+      IT    +I +GV L+ + +
Sbjct: 142 WASVKALTPDEKLMSEITATIWSI-LGVYLISLPI 173

BLAST of CmoCh01G008880 vs. TrEMBL
Match: A0A059C7J5_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E02804 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-10
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 1

Query: 19  DQNKEET---WQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQDDKNSSIV----AGTS 78
           ++NK E    WQ    + L++V T +AT+AFQ  ++PPGG+WQ+D      V    AG S
Sbjct: 260 EENKREQKRKWQNSMHKTLMVVATLLATMAFQTSITPPGGLWQEDFPGEKDVKAHTAGES 319

Query: 79  IMATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVELPSDTPSLSRKYLYYTLFFALGSMLS 138
           IMA K+P+ + +FV+  T+  I S+   ++L   LP     ++      T++ A+  M +
Sbjct: 320 IMADKYPSHYKSFVICNTLSFIASLSIIMLLVSGLPLRQRRITTWIAMLTMWIAITFMAA 379

Query: 139 SYVSSVKAYT-PESMRT 148
           +Y  S   +T PE ++T
Sbjct: 380 TYAISFYVFTPPEELKT 396

BLAST of CmoCh01G008880 vs. TrEMBL
Match: A0A022PZK1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018263mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 52/164 (31.71%), Postives = 90/164 (54.88%), Query Frame = 1

Query: 15  NGGEDQNKEETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQD---DKNSSI----- 74
           N  + ++K   W  R R  L+IV + +ATVAFQAG+SPPGGVWQ D   + NS+I     
Sbjct: 221 NSAKKKHKHTDWLARKRNALMIVASLLATVAFQAGLSPPGGVWQDDFSGNPNSTIRADKP 280

Query: 75  -VAGTSIMATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVELPSDTPSLSRKYLY---YTL 134
             AG S+MA   P ++  +++  TV  + S L  I+L V   S  P   R++++    T+
Sbjct: 281 HKAGQSVMAYTLPKKYGQYMIFNTVAFLAS-LSIILLQV---SGLPMRKRRWMWTQMVTM 340

Query: 135 FFALGSMLSSYVSSVKAYTPESMRTQTITVLALTIGIGVVLVGI 167
           + A+ +   +Y  ++ + TP+ +      V  +++ + + L+G+
Sbjct: 341 WIAISAQTLTYFVTLVSMTPKHVERTVYDVAKISVMVWLSLIGV 380

BLAST of CmoCh01G008880 vs. NCBI nr
Match: gi|449452917|ref|XP_004144205.1| (PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 72/172 (41.86%), Postives = 107/172 (62.21%), Query Frame = 1

Query: 1   MASRLEEEAPNQIGNGGEDQNKEETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQD 60
           MASR+EE+            + E+T QK D E L++++TF+ T++FQAG +PPGGVWQ+ 
Sbjct: 1   MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60

Query: 61  DKNSSIVAGTSIMATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVELPSDTPSLSRKYLYY 120
            +     AG SIMA+K P++F  F+VGVTV M++S  Q + L  ELP +  S SR ++Y 
Sbjct: 61  PE-----AGKSIMASKNPSQFVVFIVGVTVGMVLSAAQLLTLMNELPYNKLSDSRNFIYC 120

Query: 121 TLFFALGSMLSSYVSSVKAYTPESMRTQTITVLALTIGIGVVLVGISLFKQK 173
           +L   + ++  +Y SS+ A TP SM  +   VL   + IGVV+V I ++ QK
Sbjct: 121 SLGITITALGFAYWSSLTALTPSSMILEVRIVLITELSIGVVIVAIIVYIQK 167

BLAST of CmoCh01G008880 vs. NCBI nr
Match: gi|778715279|ref|XP_011657373.1| (PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = 1

Query: 17  GEDQNK---EETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQDDKNSSIVAGTSIM 76
           G ++NK      W + D ++L++V TF+ATVAFQ G +PPGGVWQ+DDK     AG SIM
Sbjct: 23  GHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIM 82

Query: 77  ATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVE---LPSDTPSLSRKYLYYTLFFALGSML 136
           ATK P++F  F+V +T C + S +QF VLF++   + +   S SR  LY T+  A+ SM 
Sbjct: 83  ATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRFILYSTMGLAVSSMG 142

Query: 137 SSYVSSVKAYTPESMRTQTITVLALT-IGIGVVLVGISLFKQ 172
            +Y  SV+AYTP+S       +  +T +G  + L  IS++ Q
Sbjct: 143 FAYGCSVRAYTPDSEENTLFVISFITMLGFPISLAAISIYLQ 184

BLAST of CmoCh01G008880 vs. NCBI nr
Match: gi|659089467|ref|XP_008445524.1| (PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 71/173 (41.04%), Postives = 109/173 (63.01%), Query Frame = 1

Query: 1   MASRLEEEAPNQIGNGGEDQ-NKEETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQ 60
           MASR+ E+    I    E+Q + E++WQK D E L++++TF+ T++FQAG +PPGGVWQ 
Sbjct: 1   MASRVGEDEETTIA--AENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQD 60

Query: 61  DDKNSSIVAGTSIMATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVELPSDTPSLSRKYLY 120
             +     AG SIMA+K P++F  F+VGV+  M++S  Q + L  ELP +  S SR ++Y
Sbjct: 61  GSE-----AGKSIMASKNPSQFLVFIVGVSTAMVLSAAQLMTLMNELPYNKLSDSRNFIY 120

Query: 121 YTLFFALGSMLSSYVSSVKAYTPESMRTQTITVLALTIGIGVVLVGISLFKQK 173
            +L F + ++  +Y SSV A TP SM  +  T L   + +G V++ I ++ QK
Sbjct: 121 CSLGFIITALGFAYGSSVTALTPSSMIDEVKTALLTVLAVGAVVIAIVIYIQK 166

BLAST of CmoCh01G008880 vs. NCBI nr
Match: gi|659089597|ref|XP_008445596.1| (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 8.4e-24
Identity = 68/160 (42.50%), Postives = 101/160 (63.12%), Query Frame = 1

Query: 17  GEDQNK---EETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQDDKNSSIVAGTSIM 76
           G ++NK      W + D ++L++V TF+ATVAFQ G +PPGGVWQ+DDK     AG SIM
Sbjct: 21  GHEKNKMMNNNNWIREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIM 80

Query: 77  ATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVE---LPSDTPSLSRKYLYYTLFFALGSML 136
           ATK P++F+ ++V +T C + S +QF VLF++   + +   S SR  LY T+  A+ SM 
Sbjct: 81  ATKSPSDFSGYLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRFILYSTMGLAISSMG 140

Query: 137 SSYVSSVKAYTPES-MRTQTITVLALTIGIGVVLVGISLF 170
            +Y  SV+AYTP+S  +T+ +      +G  + L  ISL+
Sbjct: 141 IAYGCSVRAYTPDSEEKTRYVISFITMLGFPIGLAAISLY 180

BLAST of CmoCh01G008880 vs. NCBI nr
Match: gi|449452915|ref|XP_004144204.1| (PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 1

Query: 15  NGGEDQNKEETWQKR-DREYLLIVVTFMATVAFQAGVSPPGGVWQQDDKNSSIVAGTSIM 74
           N  + + K   W K  D +++++VVTF+A VAFQ G++PPG VWQ+D   +   AG SIM
Sbjct: 22  NKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPPGSVWQED--KNGFTAGKSIM 81

Query: 75  ATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVELPSDTPSLSRKYLYYTLFFALGSMLSSY 134
           A+K P+E+  F+ GVT+C+  S++Q  V+       + S+ R  +Y  +   +  M+ S+
Sbjct: 82  ASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRRMIMYILMLCTIAPMIVSF 141

Query: 135 VSSVKAYTPESMRTQTITVLALTIGIGVVLVGISL 169
            +SVKA TP+      IT    +I +GV L+ + +
Sbjct: 142 WASVKALTPDEKLMSEITATIWSI-LGVYLISLPI 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFJ5_CUCSA9.0e-2541.86Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1[more]
A0A0A0KGU1_CUCSA1.2e-2442.59Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1[more]
A0A0A0KIL3_CUCSA1.2e-1636.13Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1[more]
A0A059C7J5_EUCGR2.2e-1033.58Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E02804 PE=4 ... [more]
A0A022PZK1_ERYGU3.7e-1031.71Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018263mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449452917|ref|XP_004144205.1|1.3e-2441.86PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus][more]
gi|778715279|ref|XP_011657373.1|1.7e-2442.59PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus][more]
gi|659089467|ref|XP_008445524.1|1.7e-2441.04PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo][more]
gi|659089597|ref|XP_008445596.1|8.4e-2442.50PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo][more]
gi|449452915|ref|XP_004144204.1|1.7e-1636.13PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026961PGG_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G008880.1CmoCh01G008880.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 25..137
score: 2.4
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 20..169
score: 1.0
NoneNo IPR availablePANTHERPTHR24177:SF17SUBFAMILY NOT NAMEDcoord: 20..169
score: 1.0

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G008880Cp4.1LG02g10710Cucurbita pepo (Zucchini)cmocpeB448
The following gene(s) are paralogous to this gene:

None