|
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The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. CCATTCTCTTGTCTGTCCTATATAAGCCACTCTCATGCTCCCTCTTACTTCCATCCCACCCTTTCTTCCGCTGCTTCAATATCATGTAACTCTGTTTATCTGTGTTCATAAATTTCTATCATAATTATACATTTCAACTTCTTTTACATATGTTTGTGTGTGATCTTTTGAAAATTTGGGGAAAAATTCGAATTGGGTCATTGTTCATTTCTTATTTCCTGGCTCCGATGGGGTTGTTTTGCTGATATTGCAGGTTGTACCACCGGAGTCAGCTCTGTTTAAGTGGAAACCAAGGAAGTAGTTGTTGAAGAAGAGCCAAAGGAAGAAGCTGCCGAAGAAGAGGCGGCTGAAGTGGCAGCTGAGCTTGTGGTGGAAGAGGAGACCAAACCAGCAGAGGCTAAGCCACCGGCGGTGGAGGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAGGAGAAACCAGAAGAAGAATCCGCAGCTGAGAAGGCCGAGTAATTGAATTTGAATCCAAATTATGGTTGAGAAATTTGGTCACTTTAATGTCTTTTTGGTTCATATTATTCAAGAACTATGACACCATGTGATCGGACGCTTAGAATGAACGGCCGCTTAGAATCATAATTTAGTTTGTTTATATGTATAACAGAGCTCTGCTCTGTTCTGCTTTTATCAAGCTACAAAGATGAAAAGGGTACAACTTTCATAACCATTTGAAGAACACGATTACTATTCAAAGAGGGAATCGATCCGATTCAGGCTACCAAAATGAACAACAGTATGAAACCAATTGGGCATGCCCTCAAAAATGACATCCATAAATTTACCAGTAGTTGGGTTGAAAAGAACCAGAGCTCTGTTTCTATACTCCAACAAAATCTCTCCACTTTTCAAAATGCAAACAACTTTAACGATTTTACTCCGCAGGACAATCTTGGAGACCTTGAAAGAAATCTCCGATGCTTCTTGTTTGATGGATTTGGGCATGTAAGCCCCAATGTTAAAGCGTTTGACCCAAGATTCCTTCACGCCGTACTGTTCCATGATCCATATTTCCATTTTGCCGTGAGTACAGTAAACGGCGGCTGA mRNA sequence CCATTCTCTTGTCTGTCCTATATAAGCCACTCTCATGCTCCCTCTTACTTCCATCCCACCCTTTCTTCCGCTGCTTCAATATCATGAAGTAGTTGTTGAAGAAGAGCCAAAGGAAGAAGCTGCCGAAGAAGAGGCGGCTGAAGTGGCAGCTGAGCTTGTGGTGGAAGAGGAGACCAAACCAGCAGAGGCTAAGCCACCGGCGGTGGAGGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAGGAGAAACCAGAAGAAGAATCCGCAGCTGAGAAGGCCGAAACACGATTACTATTCAAAGAGGGAATCGATCCGATTCAGGCTACCAAAATGAACAACAGTATGAAACCAATTGGGCATGCCCTCAAAAATGACATCCATAAATTTACCAGTAGTTGGGTTGAAAAGAACCAGAGCTCTGTTTCTATACTCCAACAAAATCTCTCCACTTTTCAAAATGCAAACAACTTTAACGATTTTACTCCGCAGGACAATCTTGGAGACCTTGAAAGAAATCTCCGATGCTTCTTGTTTGATGGATTTGGGCATGTAAGCCCCAATGTTAAAGCGTTTGACCCAAGATTCCTTCACGCCGTACTGTTCCATGATCCATATTTCCATTTTGCCGTGAGTACAGTAAACGGCGGCTGA Coding sequence (CDS) ATGCTCCCTCTTACTTCCATCCCACCCTTTCTTCCGCTGCTTCAATATCATGAAGTAGTTGTTGAAGAAGAGCCAAAGGAAGAAGCTGCCGAAGAAGAGGCGGCTGAAGTGGCAGCTGAGCTTGTGGTGGAAGAGGAGACCAAACCAGCAGAGGCTAAGCCACCGGCGGTGGAGGTGGTGGAAGAGAAGCCTGCAGAAGAAGCAGAGGAGAAACCAGAAGAAGAATCCGCAGCTGAGAAGGCCGAAACACGATTACTATTCAAAGAGGGAATCGATCCGATTCAGGCTACCAAAATGAACAACAGTATGAAACCAATTGGGCATGCCCTCAAAAATGACATCCATAAATTTACCAGTAGTTGGGTTGAAAAGAACCAGAGCTCTGTTTCTATACTCCAACAAAATCTCTCCACTTTTCAAAATGCAAACAACTTTAACGATTTTACTCCGCAGGACAATCTTGGAGACCTTGAAAGAAATCTCCGATGCTTCTTGTTTGATGGATTTGGGCATGTAAGCCCCAATGTTAAAGCGTTTGACCCAAGATTCCTTCACGCCGTACTGTTCCATGATCCATATTTCCATTTTGCCGTGAGTACAGTAAACGGCGGCTGA Protein sequence MLPLTSIPPFLPLLQYHEVVVEEEPKEEAAEEEAAEVAAELVVEEETKPAEAKPPAVEVVEEKPAEEAEEKPEEESAAEKAETRLLFKEGIDPIQATKMNNSMKPIGHALKNDIHKFTSSWVEKNQSSVSILQQNLSTFQNANNFNDFTPQDNLGDLERNLRCFLFDGFGHVSPNVKAFDPRFLHAVLFHDPYFHFAVSTVNGG
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008150 |
biological_process |
| cellular_component |
GO:0005575 |
cellular_component |
| molecular_function |
GO:0003674 |
molecular_function |
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh20G006630.1 | CmaCh20G006630.1-protein | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh20G006630.1.exon.3 | CmaCh20G006630.1.exon.3 | exon |
| CmaCh20G006630.1.exon.2 | CmaCh20G006630.1.exon.2 | exon |
| CmaCh20G006630.1.exon.1 | CmaCh20G006630.1.exon.1 | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh20G006630.1.five_prime_UTR.1 | CmaCh20G006630.1.five_prime_UTR.1 | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh20G006630.1.CDS.1 | CmaCh20G006630.1.CDS.1 | CDS |
| CmaCh20G006630.1.CDS.2 | CmaCh20G006630.1.CDS.2 | CDS |
| CmaCh20G006630.1.CDS.3 | CmaCh20G006630.1.CDS.3 | CDS |
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | unknown | Coil | Coil | coord: 27..47
scor |
|
