CmaCh20G006020.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G006020.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cellulose synthase family protein
Location	Cma_Chr20 : 2825473 .. 2825895 (-)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGTGTGGTTAGTTTTGTGCTTTTGACCATTCTTGAAGGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

mRNA sequence

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

Coding sequence (CDS)

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

Protein sequence

MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTIMMIQLIALSIGLSESMEGGSHVITELPIGEMICSGMFAKGRFGIPWPTLCKSSALTLVFVFFALMKNE

Homology

[Close]

BLAST of CmaCh20G006020.1 vs. Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.4e-17
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF +  I+ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIAL---SIGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL   S+GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLPF----LKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIPW TL K++ L ++FV F++
Sbjct: 732 KGKYGIPWSTLSKAAFLAVLFVVFSV 753

[Close]

BLAST of CmaCh20G006020.1 vs. Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE-DLGRFTFDESSLFVPATTIM 62
           ++L   + ++ K LG SET FEVT+K  S+S+ +    E + GRFTFDES++F+P T + 
Sbjct: 613 AWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALA 672

Query: 63  MIQLIALSIG-------LSESMEGGSHVITELPIGEMI------CSGMFAKGRFGIPWPT 122
           M+ +IA+++G        +E + GG  +   +  G ++        G+   GR+GIPW  
Sbjct: 673 MLSVIAIAVGAWRVVLVTTEGLPGGPGISEFISCGWLVLCFMPLLRGLVGSGRYGIPWSI 732

[Close]

BLAST of CmaCh20G006020.1 vs. Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.7e-15
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 1


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF V+ ++ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIALS---IGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL+   +GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLP----FLKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIP+ TL K++ L  +FV  ++
Sbjct: 732 KGKYGIPFSTLSKAAFLAALFVVLSV 753

[Close]

BLAST of CmaCh20G006020.1 vs. Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=3 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVK-EDLGRFTFDESSLFVPATTIM 62
           ++    + ++ K LGLSET FEVT K  S S+++D     D GRFTFD   +F+P T + 
Sbjct: 624 AWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALA 683

Query: 63  MIQLIALSIGLSESMEGGSHVITELP-IGEMICSG-------------MFAKGRFGIPWP 122
           M+ ++A+++G      G +  +   P IGE +C G             ++ KG +GIPW 
Sbjct: 684 MLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWS 743

[Close]

BLAST of CmaCh20G006020.1 vs. Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVK-EDLGRFTFDESSLFVPATTIM 62
           ++    + ++ K LGLSET FEVT K  S S+++D     D GRFTFD   +F+P T + 
Sbjct: 624 AWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALA 683

Query: 63  MIQLIALSIGLSESMEGGSHVITELP-IGEMICSG-------------MFAKGRFGIPWP 122
           M+ ++A+++G      G +  +   P IGE +C G             ++ KG +GIPW 
Sbjct: 684 MLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWS 743

[Close]

BLAST of CmaCh20G006020.1 vs. TrEMBL
Match: A0A0A0LN39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +  KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 606 ICASLLGAVAVALKLLGLSETVFEVTKKESSSSSDDTESSSDGDLGRFTFDESPLFVPGT 665

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI  S   +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 666 TILIIQLLALSIAFSRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 725

Query: 121 PTLCKSSALTLVFVFFALMK 127
            TLCKSSAL  +FV F +M+
Sbjct: 726 STLCKSSALAFLFVCFCIMQ 742

[Close]

BLAST of CmaCh20G006020.1 vs. TrEMBL
Match: A0A0A0LT64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-23
Identity = 64/136 (47.06%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE---DLGRFTFDESSLFVPA 60
           M S L G++ ++FK+ G+SET FE+TKK   SS++ D++K    DLGR TFDES LFVP 
Sbjct: 610 MSSSLLGIVAVIFKIFGISETVFEITKK--ESSSSSDDIKSDDGDLGRLTFDESPLFVPV 669

Query: 61  TTIMMIQLIALSIGLSESMEGGSHVITELPIGEMIC------------SGMFAKGRFGIP 120
           TTI+MIQL AL IG  +        + E  + E++C             GMFAKG +G+P
Sbjct: 670 TTILMIQLAALYIGFLQMQAS----VREFGVAEVMCCLWTILSFWSFLRGMFAKGNYGLP 729

Query: 121 WPTLCKSSALTLVFVF 122
           WPTL KSS L  +FV+
Sbjct: 730 WPTLFKSSVLAFLFVY 739

[Close]

BLAST of CmaCh20G006020.1 vs. TrEMBL
Match: A0A068VF86_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008789001 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.0e-23
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           M ++L G +  +FK+L LS T FEVTKK  SSS   DE +E LGRFTFD S +FVP TTI
Sbjct: 606 MTAWLCGFLSAIFKILRLSVTVFEVTKKEQSSST--DESEEKLGRFTFDNSPVFVPGTTI 665

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           +M+ L AL IG  + M+G    I E  IGE++CS            G+  KG++GIP  T
Sbjct: 666 LMVNLTALGIGFLDFMQGNGGKIIEWGIGELVCSIWVVLCFWSFLKGLLGKGKYGIPSST 725

[Close]

BLAST of CmaCh20G006020.1 vs. TrEMBL
Match: A0A0A0LQC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416195 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 69/141 (48.94%), Postives = 87/141 (61.70%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           MC Y FGV+GIV K LGLSE  FEVTKKGL +    D+ + D G F FD+S LFVP TT+
Sbjct: 20  MCPYFFGVVGIVLKFLGLSEALFEVTKKGLIT----DDGEIDEGLFIFDDSPLFVPGTTV 79

Query: 61  MMIQLIAL--SIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           +M+QL AL  SI    +  GG        +GE+ICS            GMF KGR+G+P+
Sbjct: 80  LMMQLTALLTSIWRRPTEPGG--------VGEVICSVWLILCFWPFLMGMFRKGRYGLPF 139

Query: 121 PTLCKSSALTLVFVFFALMKN 128
            T+CKSS LTL+FV+ +   N
Sbjct: 140 STICKSSILTLLFVYLSQKTN 148

[Close]

BLAST of CmaCh20G006020.1 vs. TrEMBL
Match: M5WYQ7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001889mg PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 1


Query: 5   LFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE-DLGRFTFDESSLFVPATTIMMI 64
           LFGV+ + FKLLG+SE  FEVT+K   SS+++D+  + + GRFTFDES +FVPATT++ +
Sbjct: 607 LFGVVTLAFKLLGISEVAFEVTQKDQYSSSSDDQEDDVNAGRFTFDESPIFVPATTLLFV 666

Query: 65  QLIALSIGLSESMEGGSHVITELPIGEMIC------------SGMFAKGRFGIPWPTLCK 123
              AL++GL   M+  +H      +GEM+C             G+F KG++GIP PT+ K
Sbjct: 667 HFTALAMGLF-GMQPPAHGADGAGLGEMMCCVWVVLCFWPFLKGLFGKGKYGIPMPTIFK 726

[Close]

BLAST of CmaCh20G006020.1 vs. TAIR10
Match: AT2G32530.1 (AT2G32530.1 cellulose synthase-like B3)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-18
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF +  I+ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIAL---SIGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL   S+GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLPF----LKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIPW TL K++ L ++FV F++
Sbjct: 732 KGKYGIPWSTLSKAAFLAVLFVVFSV 753

[Close]

BLAST of CmaCh20G006020.1 vs. TAIR10
Match: AT2G32540.1 (AT2G32540.1 cellulose synthase-like B4)

HSP 1 Score: 81.3 bits (199), Expect = 4.9e-16
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 1


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF V+ ++ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIALS---IGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL+   +GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLP----FLKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIP+ TL K++ L  +FV  ++
Sbjct: 732 KGKYGIPFSTLSKAAFLAALFVVLSV 753

[Close]

BLAST of CmaCh20G006020.1 vs. TAIR10
Match: AT4G15290.1 (AT4G15290.1 Cellulose synthase family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSS---------SNNEDEV-KEDLGRFTFDESS 62
           S+LF +  I+ KLLG+S+  F + KK +           S  ED+V K +LG+F FD S 
Sbjct: 611 SWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQGEDDVPKLNLGKFEFDSSG 670

Query: 63  LFVPATTIMMIQLIALSIGL------SESMEGGSHVITE-------LPIGEMICSGMFAK 122
           LF+P T IM++ L AL+  L      S S  GG   + E       + +      G+F  
Sbjct: 671 LFIPGTFIMLVNLAALAGYLVRLQRSSCSHGGGGSGLAEACGCILVVMLFLPFLKGLFEH 730

Query: 123 GRFGIPWPTLCKSSALTLVFVFFALMK 127
           G++ IP  TL K++ LT++FVFF + K
Sbjct: 731 GKYSIPLSTLSKAAFLTVLFVFFCVGK 757

[Close]

BLAST of CmaCh20G006020.1 vs. TAIR10
Match: AT2G32610.1 (AT2G32610.1 cellulose synthase-like B1)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKK---------GLSSSNNED-EVKEDLGRFTFDESS 62
           S+LF +  I  KLLG+SET F +TKK         G   S  ED     DL +F FD S 
Sbjct: 613 SWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLFKFEFDGSL 672

Query: 63  LFVPATTIMMIQLIAL---SIGL---SESMEGGSHVITE-------LPIGEMICSGMFAK 122
            F+P T I+++ + AL   S+GL   S S EGG   + E       + +      G+F K
Sbjct: 673 CFLPGTFIVLVNIAALAVFSVGLQRSSYSHEGGGSGLAEACGCVLVMMLFLPFLMGLFKK 732

Query: 123 GRFGIPWPTLCKSSALTLVFVFFAL 125
           G++G P  TL  +  L ++FV F++
Sbjct: 733 GKYGTPLSTLSIAGFLAVLFVVFSV 757

[Close]

BLAST of CmaCh20G006020.1 vs. TAIR10
Match: AT2G32620.1 (AT2G32620.1 cellulose synthase-like B)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11
Identity = 51/145 (35.17%), Postives = 74/145 (51.03%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKK----------GLSSSNNEDEVKEDLGRFTFDESS 62
           S+LF +  I+ KLLGLS+  F V+KK          G+  S  ED+     G+  FD S 
Sbjct: 612 SWLFSIFDIILKLLGLSKNVFLVSKKTMPVETMSGSGIGPSQREDDGPNS-GKTEFDGSL 671

Query: 63  LFVPATTIMMIQLIALS---IGLSESME----GGSHV------ITELPIGEMICSGMFAK 122
            F+P T I+++ L AL    +GL  S      GGS +      I  + +      G+FAK
Sbjct: 672 YFLPGTFIVLVNLAALVGVFVGLQRSSYSHGGGGSGLGEACACILVVMLFFPFLKGLFAK 731

Query: 123 GRFGIPWPTLCKSSALTLVFVFFAL 125
           G++GIP  TL K+  L + FV F++
Sbjct: 732 GKYGIPLSTLSKAGFLAVSFVVFSV 755

[Close]

BLAST of CmaCh20G006020.1 vs. NCBI nr
Match: gi|778673437|ref|XP_011649991.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +  KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 547 ICASLLGAVAVALKLLGLSETVFEVTKKESSSSSDDTESSSDGDLGRFTFDESPLFVPGT 606

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI  S   +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 607 TILIIQLLALSIAFSRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 666

Query: 121 PTLCKSSALTLVFVFFALMK 127
            TLCKSSAL  +FV F +M+
Sbjct: 667 STLCKSSALAFLFVCFCIMQ 683

[Close]

BLAST of CmaCh20G006020.1 vs. NCBI nr
Match: gi|778673434|ref|XP_004151939.2| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +  KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 606 ICASLLGAVAVALKLLGLSETVFEVTKKESSSSSDDTESSSDGDLGRFTFDESPLFVPGT 665

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI  S   +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 666 TILIIQLLALSIAFSRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 725

Query: 121 PTLCKSSALTLVFVFFALMK 127
            TLCKSSAL  +FV F +M+
Sbjct: 726 STLCKSSALAFLFVCFCIMQ 742

[Close]

BLAST of CmaCh20G006020.1 vs. NCBI nr
Match: gi|659111802|ref|XP_008455914.1| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +V KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 606 ICASLLGAVAVVLKLLGLSETVFEVTKKESSSSSDDKESSSDGDLGRFTFDESPLFVPGT 665

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI      +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 666 TILIIQLLALSIAFLRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 725

Query: 121 PTLCKSSALTLVFVFFALM 126
            TLCKSSAL  +FV F ++
Sbjct: 726 STLCKSSALAFLFVCFCII 741

[Close]

BLAST of CmaCh20G006020.1 vs. NCBI nr
Match: gi|659111804|ref|XP_008455915.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +V KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 489 ICASLLGAVAVVLKLLGLSETVFEVTKKESSSSSDDKESSSDGDLGRFTFDESPLFVPGT 548

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI      +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 549 TILIIQLLALSIAFLRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 608

Query: 121 PTLCKSSALTLVFVFFALM 126
            TLCKSSAL  +FV F ++
Sbjct: 609 STLCKSSALAFLFVCFCII 624

[Close]

BLAST of CmaCh20G006020.1 vs. NCBI nr
Match: gi|659111800|ref|XP_008455913.1| (PREDICTED: cellulose synthase-like protein H1 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE---DLGRFTFDESSLFVPA 60
           M S L G++ ++ K+ G+SET FE+TKK   SS++ D++K    DLGRFTFDES LFVP 
Sbjct: 610 MSSSLLGIVAVILKIFGISETVFEITKK--ESSSSSDDIKSGDGDLGRFTFDESPLFVPV 669

Query: 61  TTIMMIQLIALSIGLSESMEGGSHVITELPIGEMIC------------SGMFAKGRFGIP 120
           TT++MIQL ALSIG  ++       I E  + E++C             GMFAKG +G+P
Sbjct: 670 TTVLMIQLTALSIGFLQTQPS----IREFGVAEVMCCLWTILSFWSFLKGMFAKGNYGLP 729

Query: 121 WPTLCKSSALTLVFVF 122
           WPTL KSS L L+FV+
Sbjct: 730 WPTLFKSSVLALLFVY 739

The following BLAST results are available for this feature:

BLAST of CmaCh20G006020.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSLB3_ARATH	5.4e-17	40.41	Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1	[more]
CSLH1_ORYSJ	1.3e-15	33.58	Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2...	[more]
CSLB4_ARATH	8.7e-15	38.36	Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1	[more]
CSLH2_ORYSJ	2.5e-14	34.81	Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=3...	[more]
CSLH2_ORYSI	2.5e-14	34.81	Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=3 S...	[more]

BLAST of CmaCh20G006020.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN39_CUCSA	1.4e-27	51.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1	[more]
A0A0A0LT64_CUCSA	3.5e-23	47.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1	[more]
A0A068VF86_COFCA	6.0e-23	49.24	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008789001 PE=4 SV=1	[more]
A0A0A0LQC7_CUCSA	1.0e-22	48.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416195 PE=4 SV=1	[more]
M5WYQ7_PRUPE	1.3e-20	45.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001889mg PE=3 SV=1	[more]

BLAST of CmaCh20G006020.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32530.1	3.1e-18	40.41	cellulose synthase-like B3	[more]
AT2G32540.1	4.9e-16	38.36	cellulose synthase-like B4	[more]
AT4G15290.1	1.3e-13	36.05	Cellulose synthase family protein	[more]
AT2G32610.1	3.3e-12	35.86	cellulose synthase-like B1	[more]
AT2G32620.1	2.1e-11	35.17	cellulose synthase-like B	[more]

BLAST of CmaCh20G006020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673437\|ref\|XP_011649991.1\|	2.0e-27	51.43	PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis sativus]	[more]
gi\|778673434\|ref\|XP_004151939.2\|	2.0e-27	51.43	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus]	[more]
gi\|659111802\|ref\|XP_008455914.1\|	1.3e-26	51.08	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo]	[more]
gi\|659111804\|ref\|XP_008455915.1\|	1.3e-26	51.08	PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo]	[more]
gi\|659111800\|ref\|XP_008455913.1\|	1.6e-24	48.53	PREDICTED: cellulose synthase-like protein H1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005150	Cellulose_synth

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016760	cellulose synthase (UDP-forming) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006011	UDP-glucose metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh20G006020	CmaCh20G006020	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh20G006020.1	CmaCh20G006020.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G006020.1.CDS.2	CmaCh20G006020.1.CDS.2	CDS
CmaCh20G006020.1.CDS.1	CmaCh20G006020.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G006020.1.exon.2	CmaCh20G006020.1.exon.2	exon
CmaCh20G006020.1.exon.1	CmaCh20G006020.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005150	Cellulose synthase	PFAM	PF03552	Cellulose_synt	coord: 3..85 score: 1.
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 1..128 score: 3.8
None	No IPR available	PANTHER	PTHR13301:SF53	CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED	coord: 1..128 score: 3.8