CmaCh20G006020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G006020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cellulose synthase family protein
Location	Cma_Chr20 : 2825473 .. 2825895 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGTGTGGTTAGTTTTGTGCTTTTGACCATTCTTGAAGGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

mRNA sequence

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

Coding sequence (CDS)

ATGTGCTCGTACTTATTTGGAGTTATAGGCATAGTATTTAAGCTTTTAGGCTTATCAGAAACAACGTTTGAGGTAACGAAGAAGGGATTGTCTTCTTCAAACAATGAAGATGAAGTAAAGGAAGATTTGGGTCGATTCACTTTCGATGAGTCGTCGTTGTTCGTGCCAGCCACGACAATTATGATGATACAACTGATAGCGCTTTCAATCGGTTTGTCGGAATCAATGGAGGGAGGAAGCCATGTTATTACCGAATTACCTATAGGGGAGATGATATGCAGTGGAATGTTTGCAAAGGGAAGATTTGGAATTCCATGGCCAACCTTGTGCAAGTCTAGTGCTTTAACACTCGTGTTTGTGTTCTTCGCGTTAATGAAGAACGAGTGA

Protein sequence

MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTIMMIQLIALSIGLSESMEGGSHVITELPIGEMICSGMFAKGRFGIPWPTLCKSSALTLVFVFFALMKNE

Homology

[Close]

BLAST of CmaCh20G006020 vs. Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.4e-17
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF +  I+ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIAL---SIGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL   S+GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLPF----LKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIPW TL K++ L ++FV F++
Sbjct: 732 KGKYGIPWSTLSKAAFLAVLFVVFSV 753

[Close]

BLAST of CmaCh20G006020 vs. Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE-DLGRFTFDESSLFVPATTIM 62
           ++L   + ++ K LG SET FEVT+K  S+S+ +    E + GRFTFDES++F+P T + 
Sbjct: 613 AWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALA 672

Query: 63  MIQLIALSIG-------LSESMEGGSHVITELPIGEMI------CSGMFAKGRFGIPWPT 122
           M+ +IA+++G        +E + GG  +   +  G ++        G+   GR+GIPW  
Sbjct: 673 MLSVIAIAVGAWRVVLVTTEGLPGGPGISEFISCGWLVLCFMPLLRGLVGSGRYGIPWSI 732

[Close]

BLAST of CmaCh20G006020 vs. Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.7e-15
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 1


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF V+ ++ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIALS---IGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL+   +GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLP----FLKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIP+ TL K++ L  +FV  ++
Sbjct: 732 KGKYGIPFSTLSKAAFLAALFVVLSV 753

[Close]

BLAST of CmaCh20G006020 vs. Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=3 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVK-EDLGRFTFDESSLFVPATTIM 62
           ++    + ++ K LGLSET FEVT K  S S+++D     D GRFTFD   +F+P T + 
Sbjct: 624 AWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALA 683

Query: 63  MIQLIALSIGLSESMEGGSHVITELP-IGEMICSG-------------MFAKGRFGIPWP 122
           M+ ++A+++G      G +  +   P IGE +C G             ++ KG +GIPW 
Sbjct: 684 MLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWS 743

[Close]

BLAST of CmaCh20G006020 vs. Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVK-EDLGRFTFDESSLFVPATTIM 62
           ++    + ++ K LGLSET FEVT K  S S+++D     D GRFTFD   +F+P T + 
Sbjct: 624 AWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALA 683

Query: 63  MIQLIALSIGLSESMEGGSHVITELP-IGEMICSG-------------MFAKGRFGIPWP 122
           M+ ++A+++G      G +  +   P IGE +C G             ++ KG +GIPW 
Sbjct: 684 MLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWS 743

[Close]

BLAST of CmaCh20G006020 vs. TrEMBL
Match: A0A0A0LN39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +  KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 606 ICASLLGAVAVALKLLGLSETVFEVTKKESSSSSDDTESSSDGDLGRFTFDESPLFVPGT 665

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI  S   +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 666 TILIIQLLALSIAFSRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 725

Query: 121 PTLCKSSALTLVFVFFALMK 127
            TLCKSSAL  +FV F +M+
Sbjct: 726 STLCKSSALAFLFVCFCIMQ 742

[Close]

BLAST of CmaCh20G006020 vs. TrEMBL
Match: A0A0A0LT64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-23
Identity = 64/136 (47.06%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE---DLGRFTFDESSLFVPA 60
           M S L G++ ++FK+ G+SET FE+TKK   SS++ D++K    DLGR TFDES LFVP 
Sbjct: 610 MSSSLLGIVAVIFKIFGISETVFEITKK--ESSSSSDDIKSDDGDLGRLTFDESPLFVPV 669

Query: 61  TTIMMIQLIALSIGLSESMEGGSHVITELPIGEMIC------------SGMFAKGRFGIP 120
           TTI+MIQL AL IG  +        + E  + E++C             GMFAKG +G+P
Sbjct: 670 TTILMIQLAALYIGFLQMQAS----VREFGVAEVMCCLWTILSFWSFLRGMFAKGNYGLP 729

Query: 121 WPTLCKSSALTLVFVF 122
           WPTL KSS L  +FV+
Sbjct: 730 WPTLFKSSVLAFLFVY 739

[Close]

BLAST of CmaCh20G006020 vs. TrEMBL
Match: A0A068VF86_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008789001 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.0e-23
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           M ++L G +  +FK+L LS T FEVTKK  SSS   DE +E LGRFTFD S +FVP TTI
Sbjct: 606 MTAWLCGFLSAIFKILRLSVTVFEVTKKEQSSST--DESEEKLGRFTFDNSPVFVPGTTI 665

Query: 61  MMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPWPT 120
           +M+ L AL IG  + M+G    I E  IGE++CS            G+  KG++GIP  T
Sbjct: 666 LMVNLTALGIGFLDFMQGNGGKIIEWGIGELVCSIWVVLCFWSFLKGLLGKGKYGIPSST 725

[Close]

BLAST of CmaCh20G006020 vs. TrEMBL
Match: A0A0A0LQC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416195 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 69/141 (48.94%), Postives = 87/141 (61.70%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKEDLGRFTFDESSLFVPATTI 60
           MC Y FGV+GIV K LGLSE  FEVTKKGL +    D+ + D G F FD+S LFVP TT+
Sbjct: 20  MCPYFFGVVGIVLKFLGLSEALFEVTKKGLIT----DDGEIDEGLFIFDDSPLFVPGTTV 79

Query: 61  MMIQLIAL--SIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           +M+QL AL  SI    +  GG        +GE+ICS            GMF KGR+G+P+
Sbjct: 80  LMMQLTALLTSIWRRPTEPGG--------VGEVICSVWLILCFWPFLMGMFRKGRYGLPF 139

Query: 121 PTLCKSSALTLVFVFFALMKN 128
            T+CKSS LTL+FV+ +   N
Sbjct: 140 STICKSSILTLLFVYLSQKTN 148

[Close]

BLAST of CmaCh20G006020 vs. TrEMBL
Match: M5WYQ7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001889mg PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 1


Query: 5   LFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE-DLGRFTFDESSLFVPATTIMMI 64
           LFGV+ + FKLLG+SE  FEVT+K   SS+++D+  + + GRFTFDES +FVPATT++ +
Sbjct: 607 LFGVVTLAFKLLGISEVAFEVTQKDQYSSSSDDQEDDVNAGRFTFDESPIFVPATTLLFV 666

Query: 65  QLIALSIGLSESMEGGSHVITELPIGEMIC------------SGMFAKGRFGIPWPTLCK 123
              AL++GL   M+  +H      +GEM+C             G+F KG++GIP PT+ K
Sbjct: 667 HFTALAMGLF-GMQPPAHGADGAGLGEMMCCVWVVLCFWPFLKGLFGKGKYGIPMPTIFK 726

[Close]

BLAST of CmaCh20G006020 vs. TAIR10
Match: AT2G32530.1 (AT2G32530.1 cellulose synthase-like B3)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-18
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF +  I+ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIAL---SIGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL   S+GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLPF----LKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIPW TL K++ L ++FV F++
Sbjct: 732 KGKYGIPWSTLSKAAFLAVLFVVFSV 753

[Close]

BLAST of CmaCh20G006020 vs. TAIR10
Match: AT2G32540.1 (AT2G32540.1 cellulose synthase-like B4)

HSP 1 Score: 81.3 bits (199), Expect = 4.9e-16
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 1


Query: 2   CSYLFGVIGIVFKLLGLSETTFEVTKK-------GLSSSNNEDEV---KEDLGRFTFDES 61
           CS+LF V+ ++ KLLG+S+T F VTKK       G  S  ++ EV    +D G+F FD S
Sbjct: 612 CSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGS 671

Query: 62  SLFVPATTIMMIQLIALS---IGLSESMEGGSH----------VITELPIGEMICSGMFA 121
             F+P T I+++ L AL+   +GL     GGS           VI  LP       GMF 
Sbjct: 672 LYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLP----FLKGMFE 731

Query: 122 KGRFGIPWPTLCKSSALTLVFVFFAL 125
           KG++GIP+ TL K++ L  +FV  ++
Sbjct: 732 KGKYGIPFSTLSKAAFLAALFVVLSV 753

[Close]

BLAST of CmaCh20G006020 vs. TAIR10
Match: AT4G15290.1 (AT4G15290.1 Cellulose synthase family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKKGLSS---------SNNEDEV-KEDLGRFTFDESS 62
           S+LF +  I+ KLLG+S+  F + KK +           S  ED+V K +LG+F FD S 
Sbjct: 611 SWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQGEDDVPKLNLGKFEFDSSG 670

Query: 63  LFVPATTIMMIQLIALSIGL------SESMEGGSHVITE-------LPIGEMICSGMFAK 122
           LF+P T IM++ L AL+  L      S S  GG   + E       + +      G+F  
Sbjct: 671 LFIPGTFIMLVNLAALAGYLVRLQRSSCSHGGGGSGLAEACGCILVVMLFLPFLKGLFEH 730

Query: 123 GRFGIPWPTLCKSSALTLVFVFFALMK 127
           G++ IP  TL K++ LT++FVFF + K
Sbjct: 731 GKYSIPLSTLSKAAFLTVLFVFFCVGK 757

[Close]

BLAST of CmaCh20G006020 vs. TAIR10
Match: AT2G32610.1 (AT2G32610.1 cellulose synthase-like B1)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKK---------GLSSSNNED-EVKEDLGRFTFDESS 62
           S+LF +  I  KLLG+SET F +TKK         G   S  ED     DL +F FD S 
Sbjct: 613 SWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLFKFEFDGSL 672

Query: 63  LFVPATTIMMIQLIAL---SIGL---SESMEGGSHVITE-------LPIGEMICSGMFAK 122
            F+P T I+++ + AL   S+GL   S S EGG   + E       + +      G+F K
Sbjct: 673 CFLPGTFIVLVNIAALAVFSVGLQRSSYSHEGGGSGLAEACGCVLVMMLFLPFLMGLFKK 732

Query: 123 GRFGIPWPTLCKSSALTLVFVFFAL 125
           G++G P  TL  +  L ++FV F++
Sbjct: 733 GKYGTPLSTLSIAGFLAVLFVVFSV 757

[Close]

BLAST of CmaCh20G006020 vs. TAIR10
Match: AT2G32620.1 (AT2G32620.1 cellulose synthase-like B)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11
Identity = 51/145 (35.17%), Postives = 74/145 (51.03%), Query Frame = 1


Query: 3   SYLFGVIGIVFKLLGLSETTFEVTKK----------GLSSSNNEDEVKEDLGRFTFDESS 62
           S+LF +  I+ KLLGLS+  F V+KK          G+  S  ED+     G+  FD S 
Sbjct: 612 SWLFSIFDIILKLLGLSKNVFLVSKKTMPVETMSGSGIGPSQREDDGPNS-GKTEFDGSL 671

Query: 63  LFVPATTIMMIQLIALS---IGLSESME----GGSHV------ITELPIGEMICSGMFAK 122
            F+P T I+++ L AL    +GL  S      GGS +      I  + +      G+FAK
Sbjct: 672 YFLPGTFIVLVNLAALVGVFVGLQRSSYSHGGGGSGLGEACACILVVMLFFPFLKGLFAK 731

Query: 123 GRFGIPWPTLCKSSALTLVFVFFAL 125
           G++GIP  TL K+  L + FV F++
Sbjct: 732 GKYGIPLSTLSKAGFLAVSFVVFSV 755

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: gi|778673437|ref|XP_011649991.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +  KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 547 ICASLLGAVAVALKLLGLSETVFEVTKKESSSSSDDTESSSDGDLGRFTFDESPLFVPGT 606

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI  S   +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 607 TILIIQLLALSIAFSRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 666

Query: 121 PTLCKSSALTLVFVFFALMK 127
            TLCKSSAL  +FV F +M+
Sbjct: 667 STLCKSSALAFLFVCFCIMQ 683

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: gi|778673434|ref|XP_004151939.2| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +  KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 606 ICASLLGAVAVALKLLGLSETVFEVTKKESSSSSDDTESSSDGDLGRFTFDESPLFVPGT 665

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI  S   +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 666 TILIIQLLALSIAFSRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 725

Query: 121 PTLCKSSALTLVFVFFALMK 127
            TLCKSSAL  +FV F +M+
Sbjct: 726 STLCKSSALAFLFVCFCIMQ 742

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: gi|659111802|ref|XP_008455914.1| (PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +V KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 606 ICASLLGAVAVVLKLLGLSETVFEVTKKESSSSSDDKESSSDGDLGRFTFDESPLFVPGT 665

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI      +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 666 TILIIQLLALSIAFLRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 725

Query: 121 PTLCKSSALTLVFVFFALM 126
            TLCKSSAL  +FV F ++
Sbjct: 726 STLCKSSALAFLFVCFCII 741

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: gi|659111804|ref|XP_008455915.1| (PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE--DLGRFTFDESSLFVPAT 60
           +C+ L G + +V KLLGLSET FEVTKK  SSS+++ E     DLGRFTFDES LFVP T
Sbjct: 489 ICASLLGAVAVVLKLLGLSETVFEVTKKESSSSSDDKESSSDGDLGRFTFDESPLFVPGT 548

Query: 61  TIMMIQLIALSIGLSESMEGGSHVITELPIGEMICS------------GMFAKGRFGIPW 120
           TI++IQL+ALSI      +     + E  +GE+ CS            GMFAKG++G+PW
Sbjct: 549 TILIIQLLALSIAFLRIRQPN---VVEFGVGEVTCSVWLILCFWSFLKGMFAKGKYGLPW 608

Query: 121 PTLCKSSALTLVFVFFALM 126
            TLCKSSAL  +FV F ++
Sbjct: 609 STLCKSSALAFLFVCFCII 624

[Close]

BLAST of CmaCh20G006020 vs. NCBI nr
Match: gi|659111800|ref|XP_008455913.1| (PREDICTED: cellulose synthase-like protein H1 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 1   MCSYLFGVIGIVFKLLGLSETTFEVTKKGLSSSNNEDEVKE---DLGRFTFDESSLFVPA 60
           M S L G++ ++ K+ G+SET FE+TKK   SS++ D++K    DLGRFTFDES LFVP 
Sbjct: 610 MSSSLLGIVAVILKIFGISETVFEITKK--ESSSSSDDIKSGDGDLGRFTFDESPLFVPV 669

Query: 61  TTIMMIQLIALSIGLSESMEGGSHVITELPIGEMIC------------SGMFAKGRFGIP 120
           TT++MIQL ALSIG  ++       I E  + E++C             GMFAKG +G+P
Sbjct: 670 TTVLMIQLTALSIGFLQTQPS----IREFGVAEVMCCLWTILSFWSFLKGMFAKGNYGLP 729

Query: 121 WPTLCKSSALTLVFVF 122
           WPTL KSS L L+FV+
Sbjct: 730 WPTLFKSSVLALLFVY 739

The following BLAST results are available for this feature:

BLAST of CmaCh20G006020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSLB3_ARATH	5.4e-17	40.41	Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1	[more]
CSLH1_ORYSJ	1.3e-15	33.58	Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2...	[more]
CSLB4_ARATH	8.7e-15	38.36	Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1	[more]
CSLH2_ORYSJ	2.5e-14	34.81	Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=3...	[more]
CSLH2_ORYSI	2.5e-14	34.81	Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=3 S...	[more]

BLAST of CmaCh20G006020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN39_CUCSA	1.4e-27	51.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416190 PE=3 SV=1	[more]
A0A0A0LT64_CUCSA	3.5e-23	47.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416170 PE=3 SV=1	[more]
A0A068VF86_COFCA	6.0e-23	49.24	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008789001 PE=4 SV=1	[more]
A0A0A0LQC7_CUCSA	1.0e-22	48.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416195 PE=4 SV=1	[more]
M5WYQ7_PRUPE	1.3e-20	45.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001889mg PE=3 SV=1	[more]

BLAST of CmaCh20G006020 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32530.1	3.1e-18	40.41	cellulose synthase-like B3	[more]
AT2G32540.1	4.9e-16	38.36	cellulose synthase-like B4	[more]
AT4G15290.1	1.3e-13	36.05	Cellulose synthase family protein	[more]
AT2G32610.1	3.3e-12	35.86	cellulose synthase-like B1	[more]
AT2G32620.1	2.1e-11	35.17	cellulose synthase-like B	[more]

BLAST of CmaCh20G006020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673437\|ref\|XP_011649991.1\|	2.0e-27	51.43	PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis sativus]	[more]
gi\|778673434\|ref\|XP_004151939.2\|	2.0e-27	51.43	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis sativus]	[more]
gi\|659111802\|ref\|XP_008455914.1\|	1.3e-26	51.08	PREDICTED: cellulose synthase-like protein H1 isoform X1 [Cucumis melo]	[more]
gi\|659111804\|ref\|XP_008455915.1\|	1.3e-26	51.08	PREDICTED: cellulose synthase-like protein H1 isoform X2 [Cucumis melo]	[more]
gi\|659111800\|ref\|XP_008455913.1\|	1.6e-24	48.53	PREDICTED: cellulose synthase-like protein H1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005150	Cellulose_synth

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016760	cellulose synthase (UDP-forming) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006011	UDP-glucose metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G006020.1	CmaCh20G006020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005150	Cellulose synthase	PFAM	PF03552	Cellulose_synt	coord: 3..85 score: 1.
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 1..128 score: 3.8
None	No IPR available	PANTHER	PTHR13301:SF53	CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED	coord: 1..128 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G006020	MELO3C034954.2	Melon (DHL92) v3.6.1	cmamedB579

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G006020	Silver-seed gourd	carcmaB0041
CmaCh20G006020	Silver-seed gourd	carcmaB0472
CmaCh20G006020	Cucumber (Chinese Long) v3	cmacucB0650
CmaCh20G006020	Cucumber (Chinese Long) v3	cmacucB0675
CmaCh20G006020	Cucumber (Chinese Long) v3	cmacucB0684
CmaCh20G006020	Watermelon (97103) v2	cmawmbB580
CmaCh20G006020	Watermelon (97103) v2	cmawmbB582
CmaCh20G006020	Wax gourd	cmawgoB0685
CmaCh20G006020	Wax gourd	cmawgoB0702
CmaCh20G006020	Cucurbita maxima (Rimu)	cmacmaB157
CmaCh20G006020	Cucurbita maxima (Rimu)	cmacmaB443
CmaCh20G006020	Cucurbita maxima (Rimu)	cmacmaB477
CmaCh20G006020	Cucumber (Gy14) v1	cgycmaB0115
CmaCh20G006020	Cucumber (Gy14) v1	cgycmaB0408
CmaCh20G006020	Cucurbita moschata (Rifu)	cmacmoB540
CmaCh20G006020	Cucurbita moschata (Rifu)	cmacmoB547
CmaCh20G006020	Cucurbita moschata (Rifu)	cmacmoB552
CmaCh20G006020	Cucurbita moschata (Rifu)	cmacmoB561
CmaCh20G006020	Wild cucumber (PI 183967)	cmacpiB545
CmaCh20G006020	Wild cucumber (PI 183967)	cmacpiB576
CmaCh20G006020	Cucumber (Chinese Long) v2	cmacuB539
CmaCh20G006020	Cucumber (Chinese Long) v2	cmacuB569
CmaCh20G006020	Melon (DHL92) v3.5.1	cmameB502
CmaCh20G006020	Melon (DHL92) v3.5.1	cmameB513
CmaCh20G006020	Watermelon (Charleston Gray)	cmawcgB492
CmaCh20G006020	Watermelon (Charleston Gray)	cmawcgB494
CmaCh20G006020	Watermelon (97103) v1	cmawmB525
CmaCh20G006020	Watermelon (97103) v1	cmawmB528
CmaCh20G006020	Cucurbita pepo (Zucchini)	cmacpeB559
CmaCh20G006020	Cucurbita pepo (Zucchini)	cmacpeB562
CmaCh20G006020	Cucurbita pepo (Zucchini)	cmacpeB574
CmaCh20G006020	Cucurbita pepo (Zucchini)	cmacpeB578
CmaCh20G006020	Bottle gourd (USVL1VR-Ls)	cmalsiB501
CmaCh20G006020	Bottle gourd (USVL1VR-Ls)	cmalsiB513
CmaCh20G006020	Cucumber (Gy14) v2	cgybcmaB217
CmaCh20G006020	Cucumber (Gy14) v2	cgybcmaB953
CmaCh20G006020	Melon (DHL92) v3.6.1	cmamedB590
CmaCh20G006020	Melon (DHL92) v3.6.1	cmamedB603