CmaCh19G004270.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G004270.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L2, chloroplastic
Location	Cma_Chr19 : 5213202 .. 5213630 (+)
Sequence length	429

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

Protein sequence

MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK

Homology

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BLAST of CmaCh19G004270.1 vs. Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-74
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmaCh19G004270.1 vs. Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.1e-74
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNLILRRRSK 275

[Close]

BLAST of CmaCh19G004270.1 vs. Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.1e-74
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmaCh19G004270.1 vs. Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.1e-74
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

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BLAST of CmaCh19G004270.1 vs. Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.4e-74
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 196 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 255

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 256 LGRRSRKRNKYSDNLILRRRSK 277

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BLAST of CmaCh19G004270.1 vs. TrEMBL
Match: A0A0S2IE98_9ROSI (Ribosomal protein L2 OS=Cucurbita argyrosperma var. palmeri GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270.1 vs. TrEMBL
Match: A0A0S2IE39_9ROSI (Ribosomal protein L2 OS=Cucurbita argyrosperma GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270.1 vs. TrEMBL
Match: A0A0S2IEE7_9ROSI (Ribosomal protein L2 OS=Cucurbita argyrosperma subsp. sororia GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270.1 vs. TrEMBL
Match: A0A0S2IF81_9ROSI (Ribosomal protein L2 OS=Cucurbita foetidissima GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270.1 vs. TrEMBL
Match: A0A0S2IGV0_CUCPE (Ribosomal protein L2 OS=Cucurbita pepo var. texana GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270.1 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 268.1 bits (684), Expect = 3.1e-72
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRR+RKR KYS+  ILRRRSK
Sbjct: 253 LGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CmaCh19G004270.1 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 268.1 bits (684), Expect = 3.1e-72
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRR+RKR KYS+  ILRRRSK
Sbjct: 253 LGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CmaCh19G004270.1 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 60
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 120
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 121 GYPALG 123
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of CmaCh19G004270.1 vs. TAIR10
Match: AT3G51190.1 (AT3G51190.1 Ribosomal protein L2 family)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-16
Identity = 59/145 (40.69%), Postives = 76/145 (52.41%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 60
           +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 61  GQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GRA 120
           GQV   G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG     G A
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGGNHQHIGHA 227

Query: 121 PIGR--KKPATPWGYPALGRRSRKR 129
              R  K      G  A  R  R+R
Sbjct: 228 STVRRDKSAGAKVGQIAARRTGRRR 248

[Close]

BLAST of CmaCh19G004270.1 vs. TAIR10
Match: AT4G36130.1 (AT4G36130.1 Ribosomal protein L2 family)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-14
Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATV 60
           +P G  I N+E  +G  G  ARA+G  A +IA   +  ++ +KLPSG  +++   C A +
Sbjct: 107 IPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMI 166

Query: 61  GQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GRA 120
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG     G A
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHA 226

Query: 121 PIGRK--KPATPWGYPALGRRSRKRNK 131
              R+   P    G  A  R  R R +
Sbjct: 227 STVRRDAPPGKKVGLIAARRTGRLRGQ 249

[Close]

BLAST of CmaCh19G004270.1 vs. NCBI nr
Match: gi|952954360|gb|ALO21724.1| (ribosomal protein L2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 282.0 bits (720), Expect = 5.9e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270.1 vs. NCBI nr
Match: gi|788229612|ref|YP_009123784.1| (ribosomal protein L2 [Lithocarpus balansae])

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 145 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 204

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 205 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 264

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 265 LGRRSRKRNKYSDNFILRRRSK 286

[Close]

BLAST of CmaCh19G004270.1 vs. NCBI nr
Match: gi|346578258|ref|YP_004841849.1| (ribosomal protein L2 [Cucumis melo subsp. melo])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNLILRRRSK 275

[Close]

BLAST of CmaCh19G004270.1 vs. NCBI nr
Match: gi|408902757|gb|AFU96021.1| (Rpl2, partial (chloroplast) [Caloncoba echinata])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 139 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 198

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 199 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 258

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 259 LGRRSRKRNKYSDNLILRRRSK 280

[Close]

BLAST of CmaCh19G004270.1 vs. NCBI nr
Match: gi|317046214|ref|YP_004072503.1| (ribosomal protein L2 [Corynocarpus laevigata])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

The following BLAST results are available for this feature:

BLAST of CmaCh19G004270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK2_CUCSA	1.8e-74	99.30	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1	[more]
RK2A_POPAL	4.1e-74	98.59	50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1	[more]
RK2_POPTR	4.1e-74	98.59	50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV...	[more]
RK2B_POPAL	4.1e-74	98.59	50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1	[more]
RK2_MANES	5.4e-74	98.59	50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1	[more]

BLAST of CmaCh19G004270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IE98_9ROSI	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita argyrosperma var. palmeri GN=rpl2 PE=3 SV=1	[more]
A0A0S2IE39_9ROSI	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita argyrosperma GN=rpl2 PE=3 SV=1	[more]
A0A0S2IEE7_9ROSI	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita argyrosperma subsp. sororia GN=rpl2 PE=3 SV=1	[more]
A0A0S2IF81_9ROSI	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita foetidissima GN=rpl2 PE=3 SV=1	[more]
A0A0S2IGV0_CUCPE	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita pepo var. texana GN=rpl2 PE=3 SV=1	[more]

BLAST of CmaCh19G004270.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00830.1	3.1e-72	94.37	ATCG00830.1 ribosomal protein L2	[more]
ATCG01310.1	3.1e-72	94.37	ATCG01310.1 ribosomal protein L2	[more]
AT2G44065.1	3.4e-26	48.41	Ribosomal protein L2 family	[more]
AT3G51190.1	3.2e-16	40.69	Ribosomal protein L2 family	[more]
AT4G36130.1	5.1e-14	36.73	Ribosomal protein L2 family	[more]

BLAST of CmaCh19G004270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954360\|gb\|ALO21724.1\|	5.9e-73	100.00	ribosomal protein L2 (plastid) [Cucurbita argyrosperma]	[more]
gi\|788229612\|ref\|YP_009123784.1\|	1.7e-72	99.30	ribosomal protein L2 [Lithocarpus balansae]	[more]
gi\|346578258\|ref\|YP_004841849.1\|	3.0e-72	99.30	ribosomal protein L2 [Cucumis melo subsp. melo]	[more]
gi\|408902757\|gb\|AFU96021.1\|	3.0e-72	99.30	Rpl2, partial (chloroplast) [Caloncoba echinata]	[more]
gi\|317046214\|ref\|YP_004072503.1\|	3.0e-72	99.30	ribosomal protein L2 [Corynocarpus laevigata]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002171	Ribosomal_L2
IPR005880	Ribosomal_L2_bac/org-type
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2
IPR014726	Ribosomal_L2_dom3
IPR022669	Ribosomal_L2_C
IPR022671	Ribosomal_L2_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding
GO:0016740	transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0019843	rRNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh19G004270	CmaCh19G004270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh19G004270.1	CmaCh19G004270.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh19G004270.1.exon.1	CmaCh19G004270.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh19G004270.1.CDS.1	CmaCh19G004270.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..142 score: 4.7E
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAMs	TIGR01171	TIGR01171	coord: 1..141 score: 3.7
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 1..139 score: 1.14
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 1..61 score: 3.3
IPR014726	Ribosomal protein L2, domain 3	GENE3D	G3DSA:4.10.950.10		coord: 62..140 score: 2.6
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 1..117 score: 2.8
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..119 score: 6.6
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 84..95 scor
None	No IPR available	PANTHER	PTHR13691:SF19	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 1..142 score: 4.7E