CmaCh19G004270 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G004270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L2, chloroplastic
Location	Cma_Chr19 : 5213202 .. 5213630 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

Protein sequence

MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK

Homology

[Close]

BLAST of CmaCh19G004270 vs. Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-74
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmaCh19G004270 vs. Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.1e-74
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNLILRRRSK 275

[Close]

BLAST of CmaCh19G004270 vs. Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.1e-74
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmaCh19G004270 vs. Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.1e-74
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmaCh19G004270 vs. Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.4e-74
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 196 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 255

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 256 LGRRSRKRNKYSDNLILRRRSK 277

[Close]

BLAST of CmaCh19G004270 vs. TrEMBL
Match: A0A0S2IE98_9ROSI (Ribosomal protein L2 OS=Cucurbita argyrosperma var. palmeri GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270 vs. TrEMBL
Match: A0A0S2IE39_9ROSI (Ribosomal protein L2 OS=Cucurbita argyrosperma GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270 vs. TrEMBL
Match: A0A0S2IEE7_9ROSI (Ribosomal protein L2 OS=Cucurbita argyrosperma subsp. sororia GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270 vs. TrEMBL
Match: A0A0S2IF81_9ROSI (Ribosomal protein L2 OS=Cucurbita foetidissima GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270 vs. TrEMBL
Match: A0A0S2IGV0_CUCPE (Ribosomal protein L2 OS=Cucurbita pepo var. texana GN=rpl2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 268.1 bits (684), Expect = 3.1e-72
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRR+RKR KYS+  ILRRRSK
Sbjct: 253 LGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CmaCh19G004270 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 268.1 bits (684), Expect = 3.1e-72
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRR+RKR KYS+  ILRRRSK
Sbjct: 253 LGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CmaCh19G004270 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 60
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 120
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 121 GYPALG 123
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of CmaCh19G004270 vs. TAIR10
Match: AT3G51190.1 (AT3G51190.1 Ribosomal protein L2 family)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-16
Identity = 59/145 (40.69%), Postives = 76/145 (52.41%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 60
           +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 61  GQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GRA 120
           GQV   G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG     G A
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGGNHQHIGHA 227

Query: 121 PIGR--KKPATPWGYPALGRRSRKR 129
              R  K      G  A  R  R+R
Sbjct: 228 STVRRDKSAGAKVGQIAARRTGRRR 248

[Close]

BLAST of CmaCh19G004270 vs. TAIR10
Match: AT4G36130.1 (AT4G36130.1 Ribosomal protein L2 family)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-14
Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATV 60
           +P G  I N+E  +G  G  ARA+G  A +IA   +  ++ +KLPSG  +++   C A +
Sbjct: 107 IPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMI 166

Query: 61  GQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GRA 120
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG     G A
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHA 226

Query: 121 PIGRK--KPATPWGYPALGRRSRKRNK 131
              R+   P    G  A  R  R R +
Sbjct: 227 STVRRDAPPGKKVGLIAARRTGRLRGQ 249

[Close]

BLAST of CmaCh19G004270 vs. NCBI nr
Match: gi|952954360|gb|ALO21724.1| (ribosomal protein L2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 282.0 bits (720), Expect = 5.9e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNFILRRRSK 275

[Close]

BLAST of CmaCh19G004270 vs. NCBI nr
Match: gi|788229612|ref|YP_009123784.1| (ribosomal protein L2 [Lithocarpus balansae])

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 145 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 204

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 205 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 264

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDNFILRRRSK
Sbjct: 265 LGRRSRKRNKYSDNFILRRRSK 286

[Close]

BLAST of CmaCh19G004270 vs. NCBI nr
Match: gi|346578258|ref|YP_004841849.1| (ribosomal protein L2 [Cucumis melo subsp. melo])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNLILRRRSK 275

[Close]

BLAST of CmaCh19G004270 vs. NCBI nr
Match: gi|408902757|gb|AFU96021.1| (Rpl2, partial (chloroplast) [Caloncoba echinata])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 139 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 198

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 199 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 258

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 259 LGRRSRKRNKYSDNLILRRRSK 280

[Close]

BLAST of CmaCh19G004270 vs. NCBI nr
Match: gi|317046214|ref|YP_004072503.1| (ribosomal protein L2 [Corynocarpus laevigata])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120
           VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNFILRRRSK 143
           LGRRSRKRNKYSDN ILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

The following BLAST results are available for this feature:

BLAST of CmaCh19G004270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK2_CUCSA	1.8e-74	99.30	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1	[more]
RK2A_POPAL	4.1e-74	98.59	50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1	[more]
RK2_POPTR	4.1e-74	98.59	50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV...	[more]
RK2B_POPAL	4.1e-74	98.59	50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1	[more]
RK2_MANES	5.4e-74	98.59	50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1	[more]

BLAST of CmaCh19G004270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IE98_9ROSI	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita argyrosperma var. palmeri GN=rpl2 PE=3 SV=1	[more]
A0A0S2IE39_9ROSI	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita argyrosperma GN=rpl2 PE=3 SV=1	[more]
A0A0S2IEE7_9ROSI	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita argyrosperma subsp. sororia GN=rpl2 PE=3 SV=1	[more]
A0A0S2IF81_9ROSI	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita foetidissima GN=rpl2 PE=3 SV=1	[more]
A0A0S2IGV0_CUCPE	4.1e-73	100.00	Ribosomal protein L2 OS=Cucurbita pepo var. texana GN=rpl2 PE=3 SV=1	[more]

BLAST of CmaCh19G004270 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00830.1	3.1e-72	94.37	ATCG00830.1 ribosomal protein L2	[more]
ATCG01310.1	3.1e-72	94.37	ATCG01310.1 ribosomal protein L2	[more]
AT2G44065.1	3.4e-26	48.41	Ribosomal protein L2 family	[more]
AT3G51190.1	3.2e-16	40.69	Ribosomal protein L2 family	[more]
AT4G36130.1	5.1e-14	36.73	Ribosomal protein L2 family	[more]

BLAST of CmaCh19G004270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954360\|gb\|ALO21724.1\|	5.9e-73	100.00	ribosomal protein L2 (plastid) [Cucurbita argyrosperma]	[more]
gi\|788229612\|ref\|YP_009123784.1\|	1.7e-72	99.30	ribosomal protein L2 [Lithocarpus balansae]	[more]
gi\|346578258\|ref\|YP_004841849.1\|	3.0e-72	99.30	ribosomal protein L2 [Cucumis melo subsp. melo]	[more]
gi\|408902757\|gb\|AFU96021.1\|	3.0e-72	99.30	Rpl2, partial (chloroplast) [Caloncoba echinata]	[more]
gi\|317046214\|ref\|YP_004072503.1\|	3.0e-72	99.30	ribosomal protein L2 [Corynocarpus laevigata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002171	Ribosomal_L2
IPR005880	Ribosomal_L2_bac/org-type
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2
IPR014726	Ribosomal_L2_dom3
IPR022669	Ribosomal_L2_C
IPR022671	Ribosomal_L2_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding
GO:0016740	transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G004270.1	CmaCh19G004270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..142 score: 4.7E
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAMs	TIGR01171	TIGR01171	coord: 1..141 score: 3.7
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 1..139 score: 1.14
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 1..61 score: 3.3
IPR014726	Ribosomal protein L2, domain 3	GENE3D	G3DSA:4.10.950.10		coord: 62..140 score: 2.6
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 1..117 score: 2.8
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..119 score: 6.6
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 84..95 scor
None	No IPR available	PANTHER	PTHR13691:SF19	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 1..142 score: 4.7E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G004270	Cucurbita maxima (Rimu)	cmacmaB149
CmaCh19G004270	Cucumber (Gy14) v1	cgycmaB0869
CmaCh19G004270	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G004270	Cucumber (Chinese Long) v2	cmacuB517
CmaCh19G004270	Melon (DHL92) v3.5.1	cmameB469
CmaCh19G004270	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G004270	Bottle gourd (USVL1VR-Ls)	cmalsiB488
CmaCh19G004270	Cucumber (Gy14) v2	cgybcmaB385
CmaCh19G004270	Melon (DHL92) v3.6.1	cmamedB544
CmaCh19G004270	Silver-seed gourd	carcmaB0294
CmaCh19G004270	Cucumber (Chinese Long) v3	cmacucB0625