CmaCh19G003800.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh19G003800.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr19 : 4278396 .. 4279772 (-)
Sequence length1119
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTACGCTGGAACTTCGCTTGGAAGGGCATAACGGGCAAGTCTGAGCCACTTGGTCGCAGACTGTACAGAGGCAGAGATGACGGCAGGGCAGAAGCAACACCGACGCCAACCGCTTTCTACACGCTTTGCAACTCGGTCCCAAAATCCTGACTCGGTCCGGGTCGATATAAGCCGACTCGGCGTCGTCGGTTTGTCCTTCGGCGCCGGCCGTGCCGCCGTCTCCTCCGTCGCATCCGCCAGACATCGCCTGTTTCAGTTGTGCCTGGAGAGCTAGAGCGGTGGCTTCCTGTGCCCTAGCCTTCGCCTGCCAGACCTGCGCCTCGACACTAAGCTGGGCGGCGCGTGCTTCCAACTCGGCGTTTCGGCGCGTGGCCTTCTCGACCTCCGCCTCTTTCTCTCTTAACCTTCTCGCTACCGATTCCTCTACTGCATCCAGAAGTGCACGGTAGTGTCTCTGTCTTTTATCTGCCAAGGTGAGCCGTAGTTGCTCTTCCTGTTTTGAAATGAAACCGGAGTTCATTGAGAAAAAAAAAGAAAAAATCAAGACGAAAGATGAAACTCGTTTCCTGTGTTAGGGAGAGTGAATTAGCACCTGTGCTTGAAGGAATTGATCTATTTCGTCTTGTTGCCGTTTGAAATTTGAGGCGAAATCGTCTGTTAATAGCGATATGAAAGCCGATGATGATTGACGAACGAGATTGTGGTTATGATTATGTTGTTGTTGTTGTTGCTGCTGCTGCTGTTGCTGTTGCAGCGGTTGATTCTGTTGATGATTACCGGAGGACAATCGGAGACCGGTGGAGACGACATTGTTTTGGTGATTGTGAAGCTTGGCGAGATCAACAAGAAGAGGAGGACGAGGCTGCTGTATCGCAGAGAGATCGATTGGAGTCGCGAAGGTTGCTGTGGAAGTCGCCATTTCTCTTCCTCTCTTCCGAGAATTGTTTCCTGCTTTCATCACAAACCGGACTGATGAATCGAATCCTCAAAGGTACGTCGTCTTCACAACTCAATTGATAGAAATACTTTCAGCGTTTATAAACAGAATAGATCAAACACAATGCACAAAAATCTCACCTATATTGTTGTTGAACACCATATGAGTCTGGTCAAGAAAACCTCCTGGTTGTATCTGCAATGAATAATCATGCGCTTCTTGACCATTTCTAAAACAAACCAAAATCCAAAATCCAAAATCCAAAATCCAAAACCATTAGGAATCAACAGTAAGTAGAGAAATAGAGATTAGAGGCAAAAGAGAACGGGTATACCTATTTAAGAGCAAAACATTTGAAGGATATTGAGCTTGAACAGCCATGGAGAAAGGAGGAATTGTTTGAAGAAATTGGGCGTGTTTATGGAGATTGGGAATGA

mRNA sequence

CCTCTACGCTGGAACTTCGCTTGGAAGGGCATAACGGGCAAGTCTGAGCCACTTGGTCGCAGACTGTACAGAGGCAGAGATGACGGCAGGGCAGAAGCAACACCGACGCCAACCGCTTTCTACACGCTTTGCAACTCGGTCCCAAAATCCTGACTCGGTCCGGGTCGATATAAGCCGACTCGGCGTCGTCGGTTTGTCCTTCGGCGCCGGCCGTGCCGCCGTCTCCTCCGTCGCATCCGCCAGACATCGCCTGTTTCAGTTGTGCCTGGAGAGCTAGAGCGGTGGCTTCCTGTGCCCTAGCCTTCGCCTGCCAGACCTGCGCCTCGACACTAAGCTGGGCGGCGCGTGCTTCCAACTCGGCGTTTCGGCGCGTGGCCTTCTCGACCTCCGCCTCTTTCTCTCTTAACCTTCTCGCTACCGATTCCTCTACTGCATCCAGAAGTGCACGGTAGTGTCTCTGTCTTTTATCTGCCAAGGTGAGCCGTAGTTGCTCTTCCTGTTTTGAAATGAAACCGGAGTTCATTGAGAAAAAAAAAGAAAAAATCAAGACGAAAGATGAAACTCGTTTCCTGTGTTAGGGAGAGTGAATTAGCACCTGTGCTTGAAGGAATTGATCTATTTCGTCTTGTTGCCGTTTGAAATTTGAGGCGAAATCGTCTGTTAATAGCGATATGAAAGCCGATGATGATTGACGAACGAGATTGTGGTTATGATTATGTTGTTGTTGTTGTTGCTGCTGCTGCTGTTGCTGTTGCAGCGGTTGATTCTGTTGATGATTACCGGAGGACAATCGGAGACCGGTGGAGACGACATTGTTTTGGTGATTGTGAAGCTTGGCGAGATCAACAAGAAGAGGAGGACGAGGCTGCTGTATCGCAGAGAGATCGATTGGAGTCGCGAAGGTTGCTGTGGAAGTCGCCATTTCTCTTCCTCTCTTCCGAGAATTGTTTCCTGCTTTCATCACAAACCGGACTGATGAATCGAATCCTCAAAGAGGCAAAAGAGAACGGGTATACCTATTTAAGAGCAAAACATTTGAAGGATATTGAGCTTGAACAGCCATGGAGAAAGGAGGAATTGTTTGAAGAAATTGGGCGTGTTTATGGAGATTGGGAATGA

Coding sequence (CDS)

ATGATGATTGACGAACGAGATTGTGGTTATGATTATGTTGTTGTTGTTGTTGCTGCTGCTGCTGTTGCTGTTGCAGCGGTTGATTCTGTTGATGATTACCGGAGGACAATCGGAGACCGGTGGAGACGACATTGTTTTGGTGATTGTGAAGCTTGGCGAGATCAACAAGAAGAGGAGGACGAGGCTGCTGTATCGCAGAGAGATCGATTGGAGTCGCGAAGGTTGCTGTGGAAGTCGCCATTTCTCTTCCTCTCTTCCGAGAATTGTTTCCTGCTTTCATCACAAACCGGACTGATGAATCGAATCCTCAAAGAGGCAAAAGAGAACGGGTATACCTATTTAAGAGCAAAACATTTGAAGGATATTGAGCTTGAACAGCCATGGAGAAAGGAGGAATTGTTTGAAGAAATTGGGCGTGTTTATGGAGATTGGGAATGA

Protein sequence

MMIDERDCGYDYVVVVVAAAAVAVAAVDSVDDYRRTIGDRWRRHCFGDCEAWRDQQEEEDEAAVSQRDRLESRRLLWKSPFLFLSSENCFLLSSQTGLMNRILKEAKENGYTYLRAKHLKDIELEQPWRKEELFEEIGRVYGDWE
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh19G003800CmaCh19G003800gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh19G003800.1CmaCh19G003800.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh19G003800.1.CDS.2CmaCh19G003800.1.CDS.2CDS
CmaCh19G003800.1.CDS.1CmaCh19G003800.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh19G003800.1.five_prime_UTR.1CmaCh19G003800.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh19G003800.1.exon.2CmaCh19G003800.1.exon.2exon
CmaCh19G003800.1.exon.1CmaCh19G003800.1.exon.1exon


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 53..73
scor