CmaCh19G003800 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G003800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr19 : 4278396 .. 4279772 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTACGCTGGAACTTCGCTTGGAAGGGCATAACGGGCAAGTCTGAGCCACTTGGTCGCAGACTGTACAGAGGCAGAGATGACGGCAGGGCAGAAGCAACACCGACGCCAACCGCTTTCTACACGCTTTGCAACTCGGTCCCAAAATCCTGACTCGGTCCGGGTCGATATAAGCCGACTCGGCGTCGTCGGTTTGTCCTTCGGCGCCGGCCGTGCCGCCGTCTCCTCCGTCGCATCCGCCAGACATCGCCTGTTTCAGTTGTGCCTGGAGAGCTAGAGCGGTGGCTTCCTGTGCCCTAGCCTTCGCCTGCCAGACCTGCGCCTCGACACTAAGCTGGGCGGCGCGTGCTTCCAACTCGGCGTTTCGGCGCGTGGCCTTCTCGACCTCCGCCTCTTTCTCTCTTAACCTTCTCGCTACCGATTCCTCTACTGCATCCAGAAGTGCACGGTAGTGTCTCTGTCTTTTATCTGCCAAGGTGAGCCGTAGTTGCTCTTCCTGTTTTGAAATGAAACCGGAGTTCATTGAGAAAAAAAAAGAAAAAATCAAGACGAAAGATGAAACTCGTTTCCTGTGTTAGGGAGAGTGAATTAGCACCTGTGCTTGAAGGAATTGATCTATTTCGTCTTGTTGCCGTTTGAAATTTGAGGCGAAATCGTCTGTTAATAGCGATATGAAAGCCGATGATGATTGACGAACGAGATTGTGGTTATGATTATGTTGTTGTTGTTGTTGCTGCTGCTGCTGTTGCTGTTGCAGCGGTTGATTCTGTTGATGATTACCGGAGGACAATCGGAGACCGGTGGAGACGACATTGTTTTGGTGATTGTGAAGCTTGGCGAGATCAACAAGAAGAGGAGGACGAGGCTGCTGTATCGCAGAGAGATCGATTGGAGTCGCGAAGGTTGCTGTGGAAGTCGCCATTTCTCTTCCTCTCTTCCGAGAATTGTTTCCTGCTTTCATCACAAACCGGACTGATGAATCGAATCCTCAAAGGTACGTCGTCTTCACAACTCAATTGATAGAAATACTTTCAGCGTTTATAAACAGAATAGATCAAACACAATGCACAAAAATCTCACCTATATTGTTGTTGAACACCATATGAGTCTGGTCAAGAAAACCTCCTGGTTGTATCTGCAATGAATAATCATGCGCTTCTTGACCATTTCTAAAACAAACCAAAATCCAAAATCCAAAATCCAAAATCCAAAACCATTAGGAATCAACAGTAAGTAGAGAAATAGAGATTAGAGGCAAAAGAGAACGGGTATACCTATTTAAGAGCAAAACATTTGAAGGATATTGAGCTTGAACAGCCATGGAGAAAGGAGGAATTGTTTGAAGAAATTGGGCGTGTTTATGGAGATTGGGAATGA

mRNA sequence

CCTCTACGCTGGAACTTCGCTTGGAAGGGCATAACGGGCAAGTCTGAGCCACTTGGTCGCAGACTGTACAGAGGCAGAGATGACGGCAGGGCAGAAGCAACACCGACGCCAACCGCTTTCTACACGCTTTGCAACTCGGTCCCAAAATCCTGACTCGGTCCGGGTCGATATAAGCCGACTCGGCGTCGTCGGTTTGTCCTTCGGCGCCGGCCGTGCCGCCGTCTCCTCCGTCGCATCCGCCAGACATCGCCTGTTTCAGTTGTGCCTGGAGAGCTAGAGCGGTGGCTTCCTGTGCCCTAGCCTTCGCCTGCCAGACCTGCGCCTCGACACTAAGCTGGGCGGCGCGTGCTTCCAACTCGGCGTTTCGGCGCGTGGCCTTCTCGACCTCCGCCTCTTTCTCTCTTAACCTTCTCGCTACCGATTCCTCTACTGCATCCAGAAGTGCACGGTAGTGTCTCTGTCTTTTATCTGCCAAGGTGAGCCGTAGTTGCTCTTCCTGTTTTGAAATGAAACCGGAGTTCATTGAGAAAAAAAAAGAAAAAATCAAGACGAAAGATGAAACTCGTTTCCTGTGTTAGGGAGAGTGAATTAGCACCTGTGCTTGAAGGAATTGATCTATTTCGTCTTGTTGCCGTTTGAAATTTGAGGCGAAATCGTCTGTTAATAGCGATATGAAAGCCGATGATGATTGACGAACGAGATTGTGGTTATGATTATGTTGTTGTTGTTGTTGCTGCTGCTGCTGTTGCTGTTGCAGCGGTTGATTCTGTTGATGATTACCGGAGGACAATCGGAGACCGGTGGAGACGACATTGTTTTGGTGATTGTGAAGCTTGGCGAGATCAACAAGAAGAGGAGGACGAGGCTGCTGTATCGCAGAGAGATCGATTGGAGTCGCGAAGGTTGCTGTGGAAGTCGCCATTTCTCTTCCTCTCTTCCGAGAATTGTTTCCTGCTTTCATCACAAACCGGACTGATGAATCGAATCCTCAAAGAGGCAAAAGAGAACGGGTATACCTATTTAAGAGCAAAACATTTGAAGGATATTGAGCTTGAACAGCCATGGAGAAAGGAGGAATTGTTTGAAGAAATTGGGCGTGTTTATGGAGATTGGGAATGA

Coding sequence (CDS)

ATGATGATTGACGAACGAGATTGTGGTTATGATTATGTTGTTGTTGTTGTTGCTGCTGCTGCTGTTGCTGTTGCAGCGGTTGATTCTGTTGATGATTACCGGAGGACAATCGGAGACCGGTGGAGACGACATTGTTTTGGTGATTGTGAAGCTTGGCGAGATCAACAAGAAGAGGAGGACGAGGCTGCTGTATCGCAGAGAGATCGATTGGAGTCGCGAAGGTTGCTGTGGAAGTCGCCATTTCTCTTCCTCTCTTCCGAGAATTGTTTCCTGCTTTCATCACAAACCGGACTGATGAATCGAATCCTCAAAGAGGCAAAAGAGAACGGGTATACCTATTTAAGAGCAAAACATTTGAAGGATATTGAGCTTGAACAGCCATGGAGAAAGGAGGAATTGTTTGAAGAAATTGGGCGTGTTTATGGAGATTGGGAATGA

Protein sequence

MMIDERDCGYDYVVVVVAAAAVAVAAVDSVDDYRRTIGDRWRRHCFGDCEAWRDQQEEEDEAAVSQRDRLESRRLLWKSPFLFLSSENCFLLSSQTGLMNRILKEAKENGYTYLRAKHLKDIELEQPWRKEELFEEIGRVYGDWE
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G003800.1CmaCh19G003800.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 53..73
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G003800Watermelon (97103) v2cmawmbB525
CmaCh19G003800Watermelon (97103) v2cmawmbB549
CmaCh19G003800Wax gourdcmawgoB0636
CmaCh19G003800Wax gourdcmawgoB0660
CmaCh19G003800Cucurbita maxima (Rimu)cmacmaB341
CmaCh19G003800Cucurbita maxima (Rimu)cmacmaB453
CmaCh19G003800Cucurbita maxima (Rimu)cmacmaB461
CmaCh19G003800Cucumber (Gy14) v1cgycmaB0868
CmaCh19G003800Cucumber (Gy14) v1cgycmaB0892
CmaCh19G003800Cucurbita moschata (Rifu)cmacmoB503
CmaCh19G003800Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G003800Cucurbita moschata (Rifu)cmacmoB512
CmaCh19G003800Cucurbita moschata (Rifu)cmacmoB525
CmaCh19G003800Cucurbita moschata (Rifu)cmacmoB533
CmaCh19G003800Wild cucumber (PI 183967)cmacpiB518
CmaCh19G003800Wild cucumber (PI 183967)cmacpiB521
CmaCh19G003800Cucumber (Chinese Long) v2cmacuB511
CmaCh19G003800Cucumber (Chinese Long) v2cmacuB514
CmaCh19G003800Melon (DHL92) v3.5.1cmameB473
CmaCh19G003800Melon (DHL92) v3.5.1cmameB483
CmaCh19G003800Watermelon (Charleston Gray)cmawcgB440
CmaCh19G003800Watermelon (Charleston Gray)cmawcgB453
CmaCh19G003800Watermelon (97103) v1cmawmB472
CmaCh19G003800Cucurbita pepo (Zucchini)cmacpeB518
CmaCh19G003800Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G003800Cucurbita pepo (Zucchini)cmacpeB544
CmaCh19G003800Bottle gourd (USVL1VR-Ls)cmalsiB490
CmaCh19G003800Bottle gourd (USVL1VR-Ls)cmalsiB497
CmaCh19G003800Cucumber (Gy14) v2cgybcmaB377
CmaCh19G003800Cucumber (Gy14) v2cgybcmaB381
CmaCh19G003800Melon (DHL92) v3.6.1cmamedB547
CmaCh19G003800Melon (DHL92) v3.6.1cmamedB558
CmaCh19G003800Silver-seed gourdcarcmaB0788
CmaCh19G003800Silver-seed gourdcarcmaB1083
CmaCh19G003800Silver-seed gourdcarcmaB1426
CmaCh19G003800Cucumber (Chinese Long) v3cmacucB0616
CmaCh19G003800Cucumber (Chinese Long) v3cmacucB0620