CmaCh18G002690.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G002690.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr18 : 1403627 .. 1403998 (+)
Sequence length372
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGGCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCGGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGTCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGGGGGCTCGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGCAGTGGCAGTGGCGTTTTAGGTGGCGGCGCTGGAGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

mRNA sequence

ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGGCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCGGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGTCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGGGGGCTCGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGCAGTGGCAGTGGCGTTTTAGGTGGCGGCGCTGGAGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Coding sequence (CDS)

ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGGCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCGGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGTCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGGGGGCTCGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGCAGTGGCAGTGGCGTTTTAGGTGGCGGCGCTGGAGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Protein sequence

MGSFLALKFLWLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFGGGLP
Homology
[Close]
BLAST of CmaCh18G002690.1 vs. TrEMBL
Match: E5GC63_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-23
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 1 

Query: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS LA K+LWL+VL ALICASEPRRLV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGS-LAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGG GGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGGGGGFG 120

Query: 121 GGLP 124
           GGLP
Sbjct: 121 GGLP 121

[Close]
BLAST of CmaCh18G002690.1 vs. TrEMBL
Match: A0A0A0LS00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062340 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 1 

Query: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS  A K+LWL+VL ALI ASEPR+LV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGSS-AFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGGAGGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGAGGGFG 120

Query: 121 GGLP 124
           GGLP
Sbjct: 121 GGLP 121

[Close]
BLAST of CmaCh18G002690.1 vs. NCBI nr
Match: gi|659068807|ref|XP_008446362.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 1 

Query: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS LA K+LWL+VL ALICASEPRRLV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGS-LAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGG GGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGGGGGFG 120

Query: 121 GGLP 124
           GGLP
Sbjct: 121 GGLP 121

[Close]
BLAST of CmaCh18G002690.1 vs. NCBI nr
Match: gi|778664863|ref|XP_011648421.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 1 

Query: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS  A K+LWL+VL ALI ASEPR+LV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGSS-AFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGGAGGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGAGGGFG 120

Query: 121 GGLP 124
           GGLP
Sbjct: 121 GGLP 121

The following BLAST results are available for this feature:
BLAST of CmaCh18G002690.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh18G002690.1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC63_CUCME2.6e-2384.68Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LS00_CUCSA1.9e-2183.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062340 PE=4 SV=1[more]
BLAST of CmaCh18G002690.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh18G002690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068807|ref|XP_008446362.1|3.7e-2384.68PREDICTED: glycine-rich cell wall structural protein [Cucumis melo][more]
gi|778664863|ref|XP_011648421.1|2.7e-2183.06PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh18G002690CmaCh18G002690gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh18G002690.1CmaCh18G002690.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh18G002690.1.exon.1CmaCh18G002690.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh18G002690.1.CDS.1CmaCh18G002690.1.CDS.1CDS