CmaCh18G002690 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G002690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr18 : 1403627 .. 1403998 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGGCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCGGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGTCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGGGGGCTCGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGCAGTGGCAGTGGCGTTTTAGGTGGCGGCGCTGGAGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

mRNA sequence

ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGGCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCGGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGTCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGGGGGCTCGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGCAGTGGCAGTGGCGTTTTAGGTGGCGGCGCTGGAGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Coding sequence (CDS)

ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGGCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCGGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGTCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGGGGGCTCGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGCAGTGGCAGTGGCGTTTTAGGTGGCGGCGCTGGAGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Protein sequence

MGSFLALKFLWLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFGGGLP

Homology

[Close]

BLAST of CmaCh18G002690 vs. TrEMBL
Match: E5GC63_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-23
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 1


Query: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS LA K+LWL+VL ALICASEPRRLV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGS-LAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGG GGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGGGGGFG 120

Query: 121 GGLP 124
           GGLP
Sbjct: 121 GGLP 121

[Close]

BLAST of CmaCh18G002690 vs. TrEMBL
Match: A0A0A0LS00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062340 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS  A K+LWL+VL ALI ASEPR+LV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGSS-AFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGGAGGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGAGGGFG 120

Query: 121 GGLP 124
           GGLP
Sbjct: 121 GGLP 121

[Close]

BLAST of CmaCh18G002690 vs. NCBI nr
Match: gi|659068807|ref|XP_008446362.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 1


Query: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS LA K+LWL+VL ALICASEPRRLV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGS-LAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGG GGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGGGGGFG 120

Query: 121 GGLP 124
           GGLP
Sbjct: 121 GGLP 121

[Close]

BLAST of CmaCh18G002690 vs. NCBI nr
Match: gi|778664863|ref|XP_011648421.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS  A K+LWL+VL ALI ASEPR+LV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGSS-AFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGGAGGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGAGGGFG 120

Query: 121 GGLP 124
           GGLP
Sbjct: 121 GGLP 121

The following BLAST results are available for this feature:

BLAST of CmaCh18G002690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G002690 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC63_CUCME	2.6e-23	84.68	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LS00_CUCSA	1.9e-21	83.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062340 PE=4 SV=1	[more]

BLAST of CmaCh18G002690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh18G002690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068807\|ref\|XP_008446362.1\|	3.7e-23	84.68	PREDICTED: glycine-rich cell wall structural protein [Cucumis melo]	[more]
gi\|778664863\|ref\|XP_011648421.1\|	2.7e-21	83.06	PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G002690.1	CmaCh18G002690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G002690	MELO3C002446	Melon (DHL92) v3.5.1	cmameB356
CmaCh18G002690	CsaV3_1G010650	Cucumber (Chinese Long) v3	cmacucB0474
CmaCh18G002690	Carg06841	Silver-seed gourd	carcmaB0693

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G002690	Silver-seed gourd	carcmaB1275
CmaCh18G002690	Silver-seed gourd	carcmaB1394
CmaCh18G002690	Cucumber (Chinese Long) v3	cmacucB0508
CmaCh18G002690	Watermelon (97103) v2	cmawmbB401
CmaCh18G002690	Watermelon (97103) v2	cmawmbB417
CmaCh18G002690	Wax gourd	cmawgoB0514
CmaCh18G002690	Wax gourd	cmawgoB0534
CmaCh18G002690	Cucurbita maxima (Rimu)	cmacmaB209
CmaCh18G002690	Cucurbita maxima (Rimu)	cmacmaB398
CmaCh18G002690	Cucumber (Gy14) v1	cgycmaB0039
CmaCh18G002690	Cucumber (Gy14) v1	cgycmaB0163
CmaCh18G002690	Cucurbita moschata (Rifu)	cmacmoB393
CmaCh18G002690	Cucurbita moschata (Rifu)	cmacmoB409
CmaCh18G002690	Cucurbita moschata (Rifu)	cmacmoB418
CmaCh18G002690	Wild cucumber (PI 183967)	cmacpiB401
CmaCh18G002690	Wild cucumber (PI 183967)	cmacpiB427
CmaCh18G002690	Cucumber (Chinese Long) v2	cmacuB397
CmaCh18G002690	Cucumber (Chinese Long) v2	cmacuB424
CmaCh18G002690	Melon (DHL92) v3.5.1	cmameB380
CmaCh18G002690	Watermelon (Charleston Gray)	cmawcgB348
CmaCh18G002690	Watermelon (Charleston Gray)	cmawcgB358
CmaCh18G002690	Watermelon (97103) v1	cmawmB371
CmaCh18G002690	Watermelon (97103) v1	cmawmB390
CmaCh18G002690	Cucurbita pepo (Zucchini)	cmacpeB414
CmaCh18G002690	Cucurbita pepo (Zucchini)	cmacpeB420
CmaCh18G002690	Cucurbita pepo (Zucchini)	cmacpeB442
CmaCh18G002690	Bottle gourd (USVL1VR-Ls)	cmalsiB366
CmaCh18G002690	Bottle gourd (USVL1VR-Ls)	cmalsiB373
CmaCh18G002690	Cucumber (Gy14) v2	cgybcmaB093
CmaCh18G002690	Cucumber (Gy14) v2	cgybcmaB772
CmaCh18G002690	Melon (DHL92) v3.6.1	cmamedB413
CmaCh18G002690	Melon (DHL92) v3.6.1	cmamedB439