CmaCh17G008560.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G008560.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Phospholipase D alpha
Location	Cma_Chr17 : 6619325 .. 6620582 (+)
Sequence length	195

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTCTGATCTGTGGATGGAGCTGAGTTTGGGACAAATAGGAAAATTAGAACCGCTTGAATTCTGTTCGGAAACAACTACGAATGTTTTCCTCTGCCTAACATGTTGCTTTTGTGATGAGATGTTGAACTAGCTGTGTGACAAGGTTGGAAGGTCTCTTTGTATCAAGATGCTCATATTCCTGATAATTTTATTCCTACAATACCTCTTTCTGGAGGAAAAGATTTTGCTCCCCCAAATGTTGGGAAATATTTTTGATGCGATACAAAATGCTAAACACCTGATTTACATCACAGGATGATCTGTTTATACAGAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGGTATCAGAGTTTTTATGCTTGTGTGGGATCACAGAACATCAGACGGTTTACTAAAAAAGATGGTTTGATGGCCACCCATGATGAAGAAATTGAAAGTTATTAGGATTCTTGGAGTCCACGGGCTAATTGAGGGGAAGATCATGCACATGAGTAAGGGACACTATTTCTATCGGTGCAAGACCTTTTGGAGAAACTAAAAATAAGGTCAGCAAAATGGATAAATCATACCATTGTGGAGTTTCTTTGCTCCTGTCTCTGATATCAAAATCTTGCTCTTATCTTAACTTAGACATGTTAAAAGCATTCTCAAATATGTGAGCCTCAAACGTGTGGTCAGAGTGAAGATTCGTGATAGAGTTTTATTGGGCTAGCAATGTGCTCAAGAGAAGAGGAATCATAAGATAGTGTACTTTGTTTGAGGGGAAGAATCGTGTGTATACGGAAACCAAAAGTAAAGCTGCGAGAGGTTATGTTACCCCATATGATAGATTGGTAAGCAATGTTCATATATCTCAGATTTGTGTAGTTTGATTAACATTAACTTCCAAGGCGCATGGCTTAATCTTTATTCCTGATCATCTACGTACTGAAATAATATGCCTTCATTGTTGAAACACCACGCTAGATGATTTACCAAGGAAGCAGACAGTAAGTATCAGGAAAAGATAAGTGTCACGTGGAACACAGAAGTTTTTTAACTGCATAACTACGAGTTCCTTTTGTTTTCTGAGCATGTTTTTATATTGAAACAATGGAGTTAAAACATCTACTGCAGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

mRNA sequence

ATGGAGTTTTCTGATCTGTGGATGGAGCTGAAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

Coding sequence (CDS)

ATGGAGTTTTCTGATCTGTGGATGGAGCTGAAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

Protein sequence

MEFSDLWMELKIALVMDSRRPKPGGDIMLGELLEKKVSDVDDEYIIVGSANINQRSMDGASKGL

Homology

[Close]

BLAST of CmaCh17G008560.1 vs. TAIR10
Match: AT3G15730.1 (AT3G15730.1 phospholipase D alpha 1)

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-06
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1


Query: 11  KIALVMDSRRPKPGGDIMLGELLEKKVSD 40
           +IALV DSRRPKPGGD+ +GELL+KK S+
Sbjct: 236 EIALVRDSRRPKPGGDVTIGELLKKKASE 264

[Close]

BLAST of CmaCh17G008560.1 vs. TAIR10
Match: AT1G52570.1 (AT1G52570.1 phospholipase D alpha 2)

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-06
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1


Query: 18  SRRPKPGGDIMLGE-------LLEKKVSDVDDEYIIVGSANINQRSMDGA 61
           S +P+P  D +  +        +  K+  VDDEYII+GSANINQRSMDGA
Sbjct: 638 SEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGA 687

The following BLAST results are available for this feature:

BLAST of CmaCh17G008560.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G008560.1 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmaCh17G008560.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15730.1	1.8e-06	72.41	phospholipase D alpha 1	[more]
AT1G52570.1	3.9e-06	50.00	phospholipase D alpha 2	[more]

BLAST of CmaCh17G008560.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001736	PLipase_D/transphosphatidylase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh17G008560	CmaCh17G008560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh17G008560.1	CmaCh17G008560.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G008560.1.exon.3	CmaCh17G008560.1.exon.3	exon
CmaCh17G008560.1.exon.2	CmaCh17G008560.1.exon.2	exon
CmaCh17G008560.1.exon.1	CmaCh17G008560.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G008560.1.CDS.1	CmaCh17G008560.1.CDS.1	CDS
CmaCh17G008560.1.CDS.2	CmaCh17G008560.1.CDS.2	CDS
CmaCh17G008560.1.CDS.3	CmaCh17G008560.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001736	Phospholipase D/Transphosphatidylase	PROFILE	PS50035	PLD	coord: 29..56 score: 9
None	No IPR available	GENE3D	G3DSA:3.30.870.10		coord: 36..58 score: 2.