CmaCh17G008560 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G008560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhospholipase D alpha
LocationCma_Chr17 : 6619325 .. 6620582 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTTCTGATCTGTGGATGGAGCTGAGTTTGGGACAAATAGGAAAATTAGAACCGCTTGAATTCTGTTCGGAAACAACTACGAATGTTTTCCTCTGCCTAACATGTTGCTTTTGTGATGAGATGTTGAACTAGCTGTGTGACAAGGTTGGAAGGTCTCTTTGTATCAAGATGCTCATATTCCTGATAATTTTATTCCTACAATACCTCTTTCTGGAGGAAAAGATTTTGCTCCCCCAAATGTTGGGAAATATTTTTGATGCGATACAAAATGCTAAACACCTGATTTACATCACAGGATGATCTGTTTATACAGAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGGTATCAGAGTTTTTATGCTTGTGTGGGATCACAGAACATCAGACGGTTTACTAAAAAAGATGGTTTGATGGCCACCCATGATGAAGAAATTGAAAGTTATTAGGATTCTTGGAGTCCACGGGCTAATTGAGGGGAAGATCATGCACATGAGTAAGGGACACTATTTCTATCGGTGCAAGACCTTTTGGAGAAACTAAAAATAAGGTCAGCAAAATGGATAAATCATACCATTGTGGAGTTTCTTTGCTCCTGTCTCTGATATCAAAATCTTGCTCTTATCTTAACTTAGACATGTTAAAAGCATTCTCAAATATGTGAGCCTCAAACGTGTGGTCAGAGTGAAGATTCGTGATAGAGTTTTATTGGGCTAGCAATGTGCTCAAGAGAAGAGGAATCATAAGATAGTGTACTTTGTTTGAGGGGAAGAATCGTGTGTATACGGAAACCAAAAGTAAAGCTGCGAGAGGTTATGTTACCCCATATGATAGATTGGTAAGCAATGTTCATATATCTCAGATTTGTGTAGTTTGATTAACATTAACTTCCAAGGCGCATGGCTTAATCTTTATTCCTGATCATCTACGTACTGAAATAATATGCCTTCATTGTTGAAACACCACGCTAGATGATTTACCAAGGAAGCAGACAGTAAGTATCAGGAAAAGATAAGTGTCACGTGGAACACAGAAGTTTTTTAACTGCATAACTACGAGTTCCTTTTGTTTTCTGAGCATGTTTTTATATTGAAACAATGGAGTTAAAACATCTACTGCAGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

mRNA sequence

ATGGAGTTTTCTGATCTGTGGATGGAGCTGAAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

Coding sequence (CDS)

ATGGAGTTTTCTGATCTGTGGATGGAGCTGAAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

Protein sequence

MEFSDLWMELKIALVMDSRRPKPGGDIMLGELLEKKVSDVDDEYIIVGSANINQRSMDGASKGL
Homology
[Close]
BLAST of CmaCh17G008560 vs. TAIR10
Match: AT3G15730.1 (AT3G15730.1 phospholipase D alpha 1)

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-06
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1 

Query: 11  KIALVMDSRRPKPGGDIMLGELLEKKVSD 40
           +IALV DSRRPKPGGD+ +GELL+KK S+
Sbjct: 236 EIALVRDSRRPKPGGDVTIGELLKKKASE 264

[Close]
BLAST of CmaCh17G008560 vs. TAIR10
Match: AT1G52570.1 (AT1G52570.1 phospholipase D alpha 2)

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-06
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1 

Query: 18  SRRPKPGGDIMLGE-------LLEKKVSDVDDEYIIVGSANINQRSMDGA 61
           S +P+P  D +  +        +  K+  VDDEYII+GSANINQRSMDGA
Sbjct: 638 SEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGA 687

The following BLAST results are available for this feature:
BLAST of CmaCh17G008560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008560 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008560 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G15730.11.8e-0672.41 phospholipase D alpha 1[more]
AT1G52570.13.9e-0650.00 phospholipase D alpha 2[more]
BLAST of CmaCh17G008560 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001736PLipase_D/transphosphatidylase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008560.1CmaCh17G008560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001736Phospholipase D/TransphosphatidylasePROFILEPS50035PLDcoord: 29..56
score: 9
NoneNo IPR availableGENE3DG3DSA:3.30.870.10coord: 36..58
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G008560Cucurbita maxima (Rimu)cmacmaB098
CmaCh17G008560Cucurbita maxima (Rimu)cmacmaB175
CmaCh17G008560Cucurbita maxima (Rimu)cmacmaB360
CmaCh17G008560Cucurbita maxima (Rimu)cmacmaB368
CmaCh17G008560Cucumber (Gy14) v1cgycmaB0237
CmaCh17G008560Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G008560Cucurbita moschata (Rifu)cmacmoB355
CmaCh17G008560Cucurbita moschata (Rifu)cmacmoB361
CmaCh17G008560Wild cucumber (PI 183967)cmacpiB392
CmaCh17G008560Cucumber (Chinese Long) v2cmacuB388
CmaCh17G008560Melon (DHL92) v3.5.1cmameB326
CmaCh17G008560Melon (DHL92) v3.5.1cmameB348
CmaCh17G008560Watermelon (Charleston Gray)cmawcgB306
CmaCh17G008560Watermelon (Charleston Gray)cmawcgB332
CmaCh17G008560Watermelon (97103) v1cmawmB328
CmaCh17G008560Watermelon (97103) v1cmawmB339
CmaCh17G008560Cucurbita pepo (Zucchini)cmacpeB399
CmaCh17G008560Cucurbita pepo (Zucchini)cmacpeB369
CmaCh17G008560Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G008560Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G008560Cucurbita pepo (Zucchini)cmacpeB396
CmaCh17G008560Bottle gourd (USVL1VR-Ls)cmalsiB343
CmaCh17G008560Bottle gourd (USVL1VR-Ls)cmalsiB348
CmaCh17G008560Cucumber (Gy14) v2cgybcmaB196
CmaCh17G008560Cucumber (Gy14) v2cgybcmaB502
CmaCh17G008560Cucumber (Gy14) v2cgybcmaB925
CmaCh17G008560Melon (DHL92) v3.6.1cmamedB379
CmaCh17G008560Melon (DHL92) v3.6.1cmamedB402
CmaCh17G008560Silver-seed gourdcarcmaB0192
CmaCh17G008560Silver-seed gourdcarcmaB0277
CmaCh17G008560Silver-seed gourdcarcmaB0799
CmaCh17G008560Silver-seed gourdcarcmaB1419
CmaCh17G008560Cucumber (Chinese Long) v3cmacucB0423
CmaCh17G008560Cucumber (Chinese Long) v3cmacucB0436
CmaCh17G008560Cucumber (Chinese Long) v3cmacucB0462
CmaCh17G008560Watermelon (97103) v2cmawmbB362
CmaCh17G008560Watermelon (97103) v2cmawmbB382
CmaCh17G008560Watermelon (97103) v2cmawmbB387
CmaCh17G008560Wax gourdcmawgoB0492