CmaCh17G005060.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G005060.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAt2g46730/F19D11.1
LocationCma_Chr17 : 3323580 .. 3328373 (+)
Sequence length1032
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGGTGTTAGCCACAAACTAAGAACCATGTGGGCTGCCTTCTCAACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTGCCAACCAGGCCGCTTCCGACACCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGACACCGACGCCGATAACGCCACACCAAACAACAGTAGCAGCATCAAAAGCTTCGGCCACAAAATTCTCTCGGCCGCGAAATCCACAAATCCCAAATCCCGCAGCCCCATACGAAAACAGGAATCGCAATTGGAGACTGCCAAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAGAACAGAACCCGACAAGTGAAAGAACAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTACTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAGACGGTTTGATGATTCTATCATTCTCTTTTTATTACAATTGTCAATGAATTTTATATTCATGTGCAGTGTTTATTAGAATTGTCAATGAGTTCCCAACATTTGAATATGAATCCATGTTAAATCACTGCTGTATATATGACTTTTAATATTGTATGCACATTCTTTATGCCACTCCTCCATTTGGGAACCCTTCTGAGCTTTGTTCTGACTGTTGAAATAGATGAAGAAACTACCACTTCTTTGTCATGGTTAGTGGCTCTTTCTTGTTGTGCTTGTTGGTCAGAAATTAAAAGGGTTTTGTTGAGAATTGTTAGGTGGAGAGTCGCTGATTAAGAGGAAGTTCATCGGTTTATAAGCAAGGATTGTATGAGGCATTTTGAGGAAACCAAAAGCAAAGTCACAAGAGCTGATGCTCAAAGTGAACCATCGTACCATTGTGGAGAGTCGTAGTTCCTATCGGTGTCTTGATAGAAACCATAGGTCACCCACCTTAATAATTTCTGCACACCCTATGAGTCTTACAAAGCTTCCAAGACCCATCTCTAGAAGAACTCTATATAGATAGAGACTAAAGTGACAGAGTCTTGCCATAACATGTGAGCCCAGAAATGATAGCCATATGATGCCCAAGCTTCCTAGGACTAGATTGTATCTGCTTGCTACATTCGTGAAACAGATAGGAAGGAGACAATAGGGAATTATAATGGACAAAAAAGAAACAAGTCCAAATAGGAATGAGTGTCTCATCAAGCTGCAGGAAGAGTCCTCTGCTTCAGACTTACGAGTCAGAGGTAAGTAACAGATCATGAGGATTGTTGGGAGAAGAGTCCCATATCGGCAAATTAAGGGGTTGATCATGGGTTTATGCGAGGAATACATCTCCATCCGTATGAAGCCTTTTGGGGAAATAAAAAACAAAGCCACGAGAGCTTATGCTCAAAGTTGACAACATTATATCATTGTGGAGAGTCGTAGTTTTGAACATGGCATCAAAGCCATGCTCTTAACTTAGTCATGCCAATAAAATCCTCAAGTGTCGAACAAATAAGTTGTGAGCCATAAAAGTATAGTCAAAAGTGACTCAAGTGTCGAATAAAGGGTGTTTTGTTCAAGGACTTGATTAAGGGGAGACTGTTCGAGTGTTCCATAGGACCTCAGGGGAGGTTCCATGGGCCATTGTGGAGAGTCGTAATTTCTAACAACAGAGTGACGTAGCTTTAGAGATTCAACCCTTGTTATATTTTCTTGAACAAGAAAGACTGGATGTTTTCGTTACTGATAGCATAAATCTCTGGAAACTTTTATGGGATCGGGGATCGAGTCTTCTAAACATGGTCTTTTTAAGTTATTGTTTAGACCAAAGTCATGATACTCTTTTATGAAATCAACTTATGCATACATTGTGCTCCTTCTTTTAGCCTCAAATCACGGCTATAACAACATTACAATCTGTCCCAAAACTGCATAGTAATAGATGATGCACTCCTTGGATTTGGGGATCTCTTTGATCTTTCTTGGTGCGCTCTAAGAGAAACTGTTACTTTACAGGTTTGTTTAAATTATTGTTAATTTAAACAAATCTTTGAACCCTTTTATGCCTGCAATAACGTGATCCTGTTTTGGTGGAATTCTCCTTACAATTGTTTCCATTTTCTTCTCTGATCAAGTGGTAAAAAAATTTCCACTGAAAATGCAACTTAACAATGATAGATATATGTAACTCTTTTTTAGAGTTTCCATTGTAATTTGATTATTTAGGTTTGTTTTTATGGTAGGCGTTAATAATATCCCTAAACTTTCACACGTTTCATTTTGTTTCAAAATAACCTTTTTGGGAAGTTTTCAGCTAAAATGAAGGTGGAGAGAGATGTGGCATAGGTGTATGTTTCAATTATCAATGTTGCTCGTGAACTTTAGTGTATGCTTCAATATTTTCAAACTTTAACTTTTGAAATTGTTTCAAAATAACCATTGTATTTGTTTTCTAGTTATGAGCCGGAGAAAGACACCAAATAATCTTAGTTACATTCAAAACGAAGCTTTATATAAGGGTGGAAAAAAAAGGGAGATTATGGCAAAATATTGTTTCCTTCCCCATTAAAAAAATTTGAGGGAATTTAAAATTTTACTAATCCAGAAGGGAACGACAAAAACTTAAGTTGTAGGGATGCCCCAAAACACTAGGATGTTACTCTTTTTCTTTATTGCTCTTCTACCGTCGCTTTCAATTGACTTTTCTCCTATCCACCGAATTTTAGCGGCATAAATGAAAATTGAACCAATATCACGTATACTATCCTTTTACAAGTCATTATCACATCACTTTTCCGTCTTCCTTTAATGGAATAGTTGACATAAACATTATCTTGTAAGTTTAAGAGTGAAACTATTGAAAATAGAATTAATCTTCCCTTATTACTAAGAAGCATAAACACCTTATGGACATGTACACATACTGATCTCTTGTTAGTGCAATAGATGTGTTAGACATTCTTTGTACTAAGCCAAAAAGTAGGTCCGACGTTTGTTTGAGATGCACCAACACTCCGATAAGCATATGAAAGAAACAAAAATAATACAATTTAGAGGAATGTTAGATTCTTAGAATGAAAATGAAGAGAAGAAAATTATTGCATTCCCCAACTGTGTGGACTTGTTTATCATCTCAGCCACCTCCTGAGATCAGTGGTTGATGATGGAGAAACCTCTCCTCCATAGCTCTCTGTATAGCAAGAAGAATAGTTAGACTGATCCTCCAACCCACCATACCTTCCATAAGCACTCTTAAAACTTGGACTCTTCATCTCATTCCCATGAACACCACCACACCCCACCACTCTACTGTATGGATCTGGCGGTACCGGAAACGATAGCCGTTTCCTTGCAGTCCCAACTCGTTCCCTTTCCGGAGTTGCAGGCCTTTGCCTCGGTGCACTCTGTGACCGGACTCGAGCCTTGGCTGACTCTGTTGCAGCCATGTAATTAGGCAGTGAAGTTTCACCAATACCACCCCCTTTGTGATGTTGATGTTTAGACCTCAAGCTTGGCGTTTGAGGTGTAATGTGGTGGCTAATTTGGTTTCTATCTTCTCTGTTGTAGCGAGGACTTGCCGACCGAATTTGCTGGACTGGTCGGGATTTTGACGGGGACGGGGTGATGGGGAATTGGCTGTGATGGGCTCTATGGAGTGGGGAGGAAGATGGAAGCATGTTTGATCTTTGTGATTGAATTTGATAATTGGTAGTGTGGAAATTGTTGGGAGATAAGTAAGTGTATGGTCGAGAGGTGTCAATTTCAAGCGTTTTAAGTGGCTGTGGTCTGTTATCAGTGGAAGCTCTTGCCCTGCTCTCCCATGGCTTCTTAGCCATCCAATGATCCAGCCATTTTGATCCTTCTTCAAGCTCCATTTGGTTTCCTATTGATGGGCTCCTTCCAGTCCTCCATATCTAAAACATGTTTAGCATTCAAAACATAACAATTGTTGATTAAACGATGGAATGAGATATGAATTCAAACCTGTTGAGAAAAGGATTGAGATAAAATGTTGTCACGATTCAAAGCAGAGTCTCGTCTGTGTTGTAACATTGCCTTAACTTGTTCAACAGTGTGAGCACGTTCATCCCAGTCGTCTGTAACGCTGCTTCCTTCTCTTGATACACATTTGTCTTGAACATAGCGAGATTCATAGATACTGTTGGTATCGCTGAAGGTGGACCGTCGGCTGCCTTCAAGGGAGAGCCGCATACGGTGATCCAACACTTTCTCTTGTACTCTAACTAATGCTTTCATGCACTGCAGGGTTGTCTTTGCTTGTTTCCTTACATTATGGCCTCTCACCAATGCCTGCAACTTCACCAGCCCCTTCAGTGCCCGTAGAGCCCTCCTTGCCTTCCAAAATTCAAAAGTTAAAAAGGGTATCTATTCACATTATGACAAATTTACAGAGTTGAGAGCTCACCAGATATCCTCGAAAGGCGGTTTGAATGAGAATGGCAGAGTAAGAATGGCGATCCAATGGAGCAGGGGCAGGGGTGGTGAGGTGAAGAGGTTGTGCAGCCGGTGTGGCATGTTTGTGATCAGTGGGGAGAGGCGGTTGGAGGGGAGGGAGTGGCTCCGGCGGCTGAGATGCTGATTTTCTGAAAATCCAGCGGCGTTTCTCCCGCCTCTGCAGAAAAAAGTAGGACGAATCAGAAGAAGAAGAAGGAAATGAAAATTAAAGGGTACCTTTTGGTCATCATCTTTGGTGGGAGATCTGAAAGCCCTTTTGACGGCGGTCAGCCATGA

mRNA sequence

CTTGGTGTTAGCCACAAACTAAGAACCATGTGGGCTGCCTTCTCAACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTGCCAACCAGGCCGCTTCCGACACCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGACACCGACGCCGATAACGCCACACCAAACAACAGTAGCAGCATCAAAAGCTTCGGCCACAAAATTCTCTCGGCCGCGAAATCCACAAATCCCAAATCCCGCAGCCCCATACGAAAACAGGAATCGCAATTGGAGACTGCCAAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAGAACAGAACCCGACAAGTGAAAGAACAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTACTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAGACGCGAGGACTTGCCGACCGAATTTGCTGGACTGGTCGGGATTTTGACGGGGACGGGATACTGTTGGTATCGCTGAAGGTGGACCGTCGGCTGCCTTCAAGGGAGAGCCGCATACGGGTTGTCTTTGCTTGTTTCCTTACATTATGGCCTCTCACCAATGCCTGCAACTTCACCAGCCCCTTCAGTGCCCGTAGAGCCCTCCTTGCCTTCCAAAATTCAAAAGTTAAAAAGGGTATCTATTCACATTATGACAAATTTACAGAGTTGAGAGCTCACCAGATATCCTCGAAAGGCGGTTTGAATGAGAATGGCAGAGTAAGAATGGCGATCCAATGGAGCAGGGGCAGGGGTGGTGAGGTGAAGAGGTTGTGCAGCCGGTGTGGCATCGGCGTTTCTCCCGCCTCTGCAGAAAAAAGTAGGACGAATCAGAAGAAGAAGAAGGAAATGAAAATTAAAGGGTACCTTTTGGTCATCATCTTTGGTGGGAGATCTGAAAGCCCTTTTGACGGCGGTCAGCCATGA

Coding sequence (CDS)

ATGTGGGCTGCCTTCTCAACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTGCCAACCAGGCCGCTTCCGACACCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGACACCGACGCCGATAACGCCACACCAAACAACAGTAGCAGCATCAAAAGCTTCGGCCACAAAATTCTCTCGGCCGCGAAATCCACAAATCCCAAATCCCGCAGCCCCATACGAAAACAGGAATCGCAATTGGAGACTGCCAAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAGAACAGAACCCGACAAGTGAAAGAACAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTACTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAGACGCGAGGACTTGCCGACCGAATTTGCTGGACTGGTCGGGATTTTGACGGGGACGGGATACTGTTGGTATCGCTGAAGGTGGACCGTCGGCTGCCTTCAAGGGAGAGCCGCATACGGGTTGTCTTTGCTTGTTTCCTTACATTATGGCCTCTCACCAATGCCTGCAACTTCACCAGCCCCTTCAGTGCCCGTAGAGCCCTCCTTGCCTTCCAAAATTCAAAAGTTAAAAAGGGTATCTATTCACATTATGACAAATTTACAGAGTTGAGAGCTCACCAGATATCCTCGAAAGGCGGTTTGAATGAGAATGGCAGAGTAAGAATGGCGATCCAATGGAGCAGGGGCAGGGGTGGTGAGGTGAAGAGGTTGTGCAGCCGGTGTGGCATCGGCGTTTCTCCCGCCTCTGCAGAAAAAAGTAGGACGAATCAGAAGAAGAAGAAGGAAATGAAAATTAAAGGGTACCTTTTGGTCATCATCTTTGGTGGGAGATCTGAAAGCCCTTTTGACGGCGGTCAGCCATGA

Protein sequence

MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATPNNSSSIKSFGHKILSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGPPPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETRGLADRICWTGRDFDGDGILLVSLKVDRRLPSRESRIRVVFACFLTLWPLTNACNFTSPFSARRALLAFQNSKVKKGIYSHYDKFTELRAHQISSKGGLNENGRVRMAIQWSRGRGGEVKRLCSRCGIGVSPASAEKSRTNQKKKKEMKIKGYLLVIIFGGRSESPFDGGQP
Homology
[Close]
BLAST of CmaCh17G005060.1 vs. TrEMBL
Match: A0A0A0KCJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.2e-39
Identity = 104/164 (63.41%), Postives = 118/164 (71.95%), Query Frame = 1 

Query: 1   MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATPNNSSSIKSFGHKI 60
           MWAA STSP PSC RL + T   PTPP+S   A +QP  TDA+N  PNNSSSIK FGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAAKSTNPKS-RSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120
           LSA  S  PKS      K ES  E A+ISG DVLRALQKAAAVKEK RT+QVKE+KK   
Sbjct: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKK--- 120

Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLTELEKRLQEISE 162
              EG+ +++  SEMN RVRPL+I  DWGLRLT+LEKRL EIS+
Sbjct: 121 -KKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISD 160

[Close]
BLAST of CmaCh17G005060.1 vs. TrEMBL
Match: M5XRM4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012518mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 63/177 (35.59%), Postives = 89/177 (50.28%), Query Frame = 1 

Query: 1   MWA-AFSTSPSPSCCRLPLPTRPLPTPPVS----AIYAKAQPPDTDADNATPNNSSSIKS 60
           MWA ++ + P+P C  L    R L  PP++    ++ AK+QPP  D           +  
Sbjct: 1   MWAVSYLSPPTPPCHPL---VRNLNRPPLNLKSLSVSAKSQPPGQD-----------LGG 60

Query: 61  FGHKILSAAKSTNPKSRSPIRKQESQLETAK--------ISGLDVLRALQKAAAVKEKNR 120
            GH IL+  KS N K  +PI  ++ Q +  K        ISG DVL ALQKAA  K +  
Sbjct: 61  LGHSILTKLKS-NHKPTTPILSKQKQKQKQKQNQEGKQMISGSDVLFALQKAADKKSREI 120

Query: 121 TRQVKEQKKDGPPPTEGSGSDNSEM----NRRVRPLRIKNDWGLRLTELEKRLQEIS 161
            ++ K+        +   GS   E     + +VRPL +K++WG RL ELEKR QE+S
Sbjct: 121 GKKKKKANVSSSSLSSYLGSHGEEEGVDEDGKVRPLCVKSEWGDRLDELEKRFQELS 162

[Close]
BLAST of CmaCh17G005060.1 vs. TrEMBL
Match: B9SVF7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0131360 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-07
Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = 1 

Query: 66  STNPKSRSPIRKQESQLE------TAKISGLDVLRALQKAAAVKEKNRTRQVKE-QKKDG 125
           STN K R  ++KQ+ + +      T ++SG+DVL A+QKAAA  EKNRT   K  +K+DG
Sbjct: 44  STNKKQRQKLQKQDEEKQKERGAVTNQLSGIDVLWAMQKAAA--EKNRTSNSKRNRKRDG 103

Query: 126 PPPTEGSGSDNSEMNR----RVRPLRIKNDWGLRLTELEKRLQEIS 161
                G      E +      VRPL IK+DWG RL  LEKRL E+S
Sbjct: 104 LISASGQKEKEKEKDAVDYSNVRPLCIKSDWGPRLDRLEKRLNELS 147

[Close]
BLAST of CmaCh17G005060.1 vs. TAIR10
Match: AT2G46735.1 (AT2G46735.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 9.8e-08
Identity = 54/152 (35.53%), Postives = 71/152 (46.71%), Query Frame = 1 

Query: 26  PPVSAIYAKAQPPDTDADN---------ATPNNSSSIKSFGHKILSAAKSTNPKSRSPIR 85
           P V+   A +QPP  + D               S S+   G +IL     +NP  R PI 
Sbjct: 17  PTVATSVAYSQPPPHNYDGIHRRFINVPTKSQTSESVGGLGQQILLRTVDSNP--RKPIP 76

Query: 86  KQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGPPPTEGSGS------DNS 145
           K+       +ISG DVL A+Q+A A  ++ RT   K++ K+     E S S      DN 
Sbjct: 77  KE------TEISGSDVLWAIQRATA--QRKRTNAGKKKTKNRLSGVELSSSAGEPTGDNG 136

Query: 146 EMNRRVRPLRIKNDWGLRLTELEKRLQEISET 163
                V PLRIK+DWG RL E EK L+E   T
Sbjct: 137 VDYSNVTPLRIKSDWGHRLEEFEKLLKEFQNT 158

[Close]
BLAST of CmaCh17G005060.1 vs. NCBI nr
Match: gi|659119605|ref|XP_008459744.1| (PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 6.3e-41
Identity = 106/164 (64.63%), Postives = 121/164 (73.78%), Query Frame = 1 

Query: 1   MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATPNNSSSIKSFGHKI 60
           MWAA STSPSPS  RLP+ T P P  PVS  YAK+ PP  DA+N  PNNS +IKSFGHKI
Sbjct: 1   MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60

Query: 61  LSAAKSTNPKS-RSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120
           LSA  S  P+S      K ESQ E  +ISG DVLRALQKAAAVKEKNRT+QVKE+KK   
Sbjct: 61  LSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKK--- 120

Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLTELEKRLQEISE 162
              EG+ +++  SEMN RVRPL+IK DWGLRLT+LEKRL E+SE
Sbjct: 121 KKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161

[Close]
BLAST of CmaCh17G005060.1 vs. NCBI nr
Match: gi|778712168|ref|XP_011656857.1| (PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 104/164 (63.41%), Postives = 118/164 (71.95%), Query Frame = 1 

Query: 1   MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATPNNSSSIKSFGHKI 60
           MWAA STSP PSC RL + T   PTPP+S   A +QP  TDA+N  PNNSSSIK FGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAAKSTNPKS-RSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120
           LSA  S  PKS      K ES  E A+ISG DVLRALQKAAAVKEK RT+QVKE+KK   
Sbjct: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKK--- 120

Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLTELEKRLQEISE 162
              EG+ +++  SEMN RVRPL+I  DWGLRLT+LEKRL EIS+
Sbjct: 121 -KKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISD 160

[Close]
BLAST of CmaCh17G005060.1 vs. NCBI nr
Match: gi|1009142925|ref|XP_015888986.1| (PREDICTED: histone-lysine N-methyltransferase SETD1B-A-like [Ziziphus jujuba])

HSP 1 Score: 73.9 bits (180), Expect = 5.8e-10
Identity = 65/172 (37.79%), Postives = 91/172 (52.91%), Query Frame = 1 

Query: 1   MWAA-FSTSPSPSCCRLPLPTRP---LPTPPVSAIYAKAQPPDTDADNATPNNSSSIKSF 60
           MWAA   +SP P    +P PT+P   L  P V ++   +QPPD +       + ++I S 
Sbjct: 1   MWAASIGSSPGPCHSLIPKPTKPRRRLIGPLVLSVPVNSQPPDQNIQRLGRTSRTTIDS- 60

Query: 61  GHKILSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKK 120
                 + K TNP  +    ++E   E  +ISG DVL A+QKAAA K +    + K++KK
Sbjct: 61  ------STKPTNPIEKQDEGEEEE--EGRQISGSDVLWAMQKAAAHKNRVSGMKKKKKKK 120

Query: 121 DGPPPTEGSGSDNSEMN-----RRVRPLRIKNDWGLRLTELEKRLQEISETR 164
           +    ++GS S + E         VRPL I +DWG RL ELEK LQE+S  R
Sbjct: 121 NKMKKSKGSSSSHVEQEVAIDYSNVRPLSISSDWGGRLDELEKLLQELSSER 163

[Close]
BLAST of CmaCh17G005060.1 vs. NCBI nr
Match: gi|658019473|ref|XP_008345091.1| (PREDICTED: protein SCARECROW 1-like [Malus domestica])

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-08
Identity = 62/167 (37.13%), Postives = 85/167 (50.90%), Query Frame = 1 

Query: 1   MWAAFSTSPSPSCCRLPLPTRPLPTPPVS-AIYAKAQPPDTDADNATPNNSSSIKSFGHK 60
           MWA     P P     PL  +P PT P+  +I AK+QPP  D           +   G  
Sbjct: 1   MWAVSYPPPPPPS--QPLIPKPPPTYPIRLSIVAKSQPPSQD-----------LXGLGRS 60

Query: 61  ILSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120
           IL+  KS NP  +   ++++ + +   ISG DVL A+Q+AAA K     R+  ++KK  P
Sbjct: 61  ILTKLKS-NPNPKLQGKQKQDEEDKKVISGSDVLSAMQRAAAKK----NRESVKKKKKAP 120

Query: 121 PPTEGS--GSDNSEMN----RRVRPLRIKNDWGLRLTELEKRLQEIS 161
           P +  S  GS   E        VRPL +K++WG RL EL KRL E+S
Sbjct: 121 PSSSSSYAGSHREEEGVDEYGNVRPLCVKSEWGSRLDELGKRLXELS 149

[Close]
BLAST of CmaCh17G005060.1 vs. NCBI nr
Match: gi|596049264|ref|XP_007220476.1| (hypothetical protein PRUPE_ppa012518mg [Prunus persica])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 63/177 (35.59%), Postives = 89/177 (50.28%), Query Frame = 1 

Query: 1   MWA-AFSTSPSPSCCRLPLPTRPLPTPPVS----AIYAKAQPPDTDADNATPNNSSSIKS 60
           MWA ++ + P+P C  L    R L  PP++    ++ AK+QPP  D           +  
Sbjct: 1   MWAVSYLSPPTPPCHPL---VRNLNRPPLNLKSLSVSAKSQPPGQD-----------LGG 60

Query: 61  FGHKILSAAKSTNPKSRSPIRKQESQLETAK--------ISGLDVLRALQKAAAVKEKNR 120
            GH IL+  KS N K  +PI  ++ Q +  K        ISG DVL ALQKAA  K +  
Sbjct: 61  LGHSILTKLKS-NHKPTTPILSKQKQKQKQKQNQEGKQMISGSDVLFALQKAADKKSREI 120

Query: 121 TRQVKEQKKDGPPPTEGSGSDNSEM----NRRVRPLRIKNDWGLRLTELEKRLQEIS 161
            ++ K+        +   GS   E     + +VRPL +K++WG RL ELEKR QE+S
Sbjct: 121 GKKKKKANVSSSSLSSYLGSHGEEEGVDEDGKVRPLCVKSEWGDRLDELEKRFQELS 162

The following BLAST results are available for this feature:
BLAST of CmaCh17G005060.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G005060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCJ8_CUCSA9.2e-3963.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1[more]
M5XRM4_PRUPE1.9e-0735.59Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012518mg PE=4 SV=1[more]
B9SVF7_RICCO3.2e-0745.28Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0131360 PE=4 SV=1[more]
BLAST of CmaCh17G005060.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46735.19.8e-0835.53 unknown protein[more]
BLAST of CmaCh17G005060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119605|ref|XP_008459744.1|6.3e-4164.63PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo][more]
gi|778712168|ref|XP_011656857.1|1.3e-3863.41PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus][more]
gi|1009142925|ref|XP_015888986.1|5.8e-1037.79PREDICTED: histone-lysine N-methyltransferase SETD1B-A-like [Ziziphus jujuba][more]
gi|658019473|ref|XP_008345091.1|4.1e-0837.13PREDICTED: protein SCARECROW 1-like [Malus domestica][more]
gi|596049264|ref|XP_007220476.1|2.7e-0735.59hypothetical protein PRUPE_ppa012518mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh17G005060CmaCh17G005060gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh17G005060.1CmaCh17G005060.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh17G005060.1.exon.1CmaCh17G005060.1.exon.1exon
CmaCh17G005060.1.exon.2CmaCh17G005060.1.exon.2exon
CmaCh17G005060.1.exon.3CmaCh17G005060.1.exon.3exon
CmaCh17G005060.1.exon.4CmaCh17G005060.1.exon.4exon
CmaCh17G005060.1.exon.5CmaCh17G005060.1.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh17G005060.1.five_prime_UTR.1CmaCh17G005060.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh17G005060.1.CDS.1CmaCh17G005060.1.CDS.1CDS
CmaCh17G005060.1.CDS.2CmaCh17G005060.1.CDS.2CDS
CmaCh17G005060.1.CDS.3CmaCh17G005060.1.CDS.3CDS
CmaCh17G005060.1.CDS.4CmaCh17G005060.1.CDS.4CDS
CmaCh17G005060.1.CDS.5CmaCh17G005060.1.CDS.5CDS


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 142..162
scor
NoneNo IPR availablePANTHERPTHR37728FAMILY NOT NAMEDcoord: 83..164
score: 1.2