CmaCh17G000500.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh17G000500.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 220576 .. 221504 (-)
Sequence length630
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGCCTAGTAGCATTATTGATTTCAACCCTATGGTCGCTATTAACTTCGAGATATTATAATTCTTTTGAGTTTTCTTGATAATCAAATGTCGTTGGATCAGGTGGCACAACTTAGAATCACATACTGTACAAAATGCTAAATTTTATAGCCTTCACAGATAATTTCATACAGATCTGTATGTGCATCTTTGTTTATGCTTCTACACATCAATTATACCTTACAAACACTTCATTTTCCTTTAGAATGCCGAGACGCTCTCCTAATCTTCCTTCGGAATGGCCTACACGCCTCAATGCTGAGACCAACGGCTGCAGCTAGTGCCATGAAAATGGCAGCATCCTCTGTACATGTCACATGTCGCATGGCGAGTTGCACCATTGGCTTACTGCTCTTTCCTTCCCCTTGTACTCTACAACTCATGACGAAACCTCCGACCAGTTGGCCTAATGCTGCAAAGTCTCCGCTGCTCTGCGGGCTTGGTATTGGAACTGTTGCTGCTCGTAACTGTTTGTCAGTGTCTATGAAGAACTCCCCACCTCTCTCAGCATTGATATGGATCTCAGACATGAGAAGTTCCCCTCCCTCTTGAGCTTCGGAGAGAAGGTGAAAGCGACAGCAGACAGTGTCTCTAATTCCTCGCTCGCGCCATGCCTCGAGCTTTCCCCATGGCTGCCAACTTTCAGGTATGCAAACATCAGGACGAACAATCAGCCAAGACCCGGGGTTTGACCGGGCAACCCAATCGCAACCTGCTGATGGCACAAAGGGAGTAGTTATGAAGGCTGCTGCAACAGCCGAGCCAGAAAGATCATGTATCTTCACCTTCCAGCCTTTTCTTTCTCTCCGCTCGACCTTGAGGTCTGAGCCATCACCAGAACCTAACCAATCTGAGCCATCACCAGAACCTGACCCTGACCAATAG

mRNA sequence

ATGGAATGCCGAGACGCTCTCCTAATCTTCCTTCGGAATGGCCTACACGCCTCAATGCTGAGACCAACGGCTGCAGCTAGTGCCATGAAAATGGCAGCATCCTCTGTACATGTCACATGTCGCATGGCGAGTTGCACCATTGGCTTACTGCTCTTTCCTTCCCCTTGTACTCTACAACTCATGACGAAACCTCCGACCAGTTGGCCTAATGCTGCAAAGTCTCCGCTGCTCTGCGGGCTTGGTATTGGAACTGTTGCTGCTCAACTCCCCACCTCTCTCAGCATTGATATGGATCTCAGACATGAGAAGTTCCCCTCCCTCTTGAGCTTCGGAGAGAAGGTGAAAGCGACAGCAGACAGTGTCTCTAATTCCTCGCTCGCGCCATGCCTCGAGCTTTCCCCATGGCTGCCAACTTTCAGCCAAGACCCGGGGTTTGACCGGGCAACCCAATCGCAACCTGCTGATGGCACAAAGGGAGTAGTTATGAAGGCTGCTGCAACAGCCGAGCCAGAAAGATCATGTATCTTCACCTTCCAGCCTTTTCTTTCTCTCCGCTCGACCTTGAGGTCTGAGCCATCACCAGAACCTAACCAATCTGAGCCATCACCAGAACCTGACCCTGACCAATAG

Coding sequence (CDS)

ATGGAATGCCGAGACGCTCTCCTAATCTTCCTTCGGAATGGCCTACACGCCTCAATGCTGAGACCAACGGCTGCAGCTAGTGCCATGAAAATGGCAGCATCCTCTGTACATGTCACATGTCGCATGGCGAGTTGCACCATTGGCTTACTGCTCTTTCCTTCCCCTTGTACTCTACAACTCATGACGAAACCTCCGACCAGTTGGCCTAATGCTGCAAAGTCTCCGCTGCTCTGCGGGCTTGGTATTGGAACTGTTGCTGCTCAACTCCCCACCTCTCTCAGCATTGATATGGATCTCAGACATGAGAAGTTCCCCTCCCTCTTGAGCTTCGGAGAGAAGGTGAAAGCGACAGCAGACAGTGTCTCTAATTCCTCGCTCGCGCCATGCCTCGAGCTTTCCCCATGGCTGCCAACTTTCAGCCAAGACCCGGGGTTTGACCGGGCAACCCAATCGCAACCTGCTGATGGCACAAAGGGAGTAGTTATGAAGGCTGCTGCAACAGCCGAGCCAGAAAGATCATGTATCTTCACCTTCCAGCCTTTTCTTTCTCTCCGCTCGACCTTGAGGTCTGAGCCATCACCAGAACCTAACCAATCTGAGCCATCACCAGAACCTGACCCTGACCAATAG

Protein sequence

MECRDALLIFLRNGLHASMLRPTAAASAMKMAASSVHVTCRMASCTIGLLLFPSPCTLQLMTKPPTSWPNAAKSPLLCGLGIGTVAAQLPTSLSIDMDLRHEKFPSLLSFGEKVKATADSVSNSSLAPCLELSPWLPTFSQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLRSTLRSEPSPEPNQSEPSPEPDPDQ
BLAST of CmaCh17G000500.1 vs. TrEMBL
Match: A0A0A9D7Z2_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-19
Identity = 71/189 (37.57%), Postives = 94/189 (49.74%), Query Frame = 1

Query: 19  MLRPTAAASAMKMAASSVHVTCRMASCTIGLLLFPSPCTLQLMTKPPTSWPNAAKSPLLC 78
           M R TAA SA K A S +HVTC   +CT+G L FPSP T++ MTKPP    N   +PL+ 
Sbjct: 1   MQRSTAADSATKTATSPMHVTCCTPTCTVGRLAFPSPSTVEPMTKPPA---NGQAAPLVA 60

Query: 79  GLGIGTVAAQLPTSLSIDMDLRHEKFPSLLSFGEKVKATADSVSNSSLAPC--------- 138
               G VA  +       + +      +  S+G + K ++    ++S  PC         
Sbjct: 61  S---GNVAGSMKNRPPRLVLMEDSAMGTAHSWGPESKTSSSRYPSASTCPCSRHASSRAQ 120

Query: 139 -LELSPWLPT---FSQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLR 195
             +L    P     SQ+PG  R T+ +P DGT GV M AAAT EP+RS + T QP    R
Sbjct: 121 GFQLDGPAPVAWRMSQEPGLARETRPEPGDGTNGVTMDAAATGEPDRSWMVTVQPLRCSR 180

BLAST of CmaCh17G000500.1 vs. TrEMBL
Match: A0A0A9PA10_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 1

Query: 138 TFSQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLRSTLRSEPSPEPN 197
           T SQ PG DRAT S P  GT GV M AAATAEP+RS I TFQPFLS   ++ S P P P+
Sbjct: 65  TMSQAPGLDRATVSPPGAGTNGVAMNAAATAEPDRSWITTFQPFLSRLISMSSSP-PAPD 124

Query: 198 QSEP 202
           Q  P
Sbjct: 125 QYCP 127

BLAST of CmaCh17G000500.1 vs. TrEMBL
Match: A0A103YNA3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009322 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1

Query: 4   RDALLIFLRNGLHASMLRPTAAASAMKMAASSVHVTCRMASCTIGLLLFPSPCTLQLMTK 63
           R++ L      L AS+LR  AA SA K AAS++HVTC   +CTIGLL+FPSP TL+L+T 
Sbjct: 218 RNSFLSLREKSLQASILRSIAAESATKRAASAIHVTCCTPTCTIGLLVFPSPSTLELITN 277

Query: 64  P 65
           P
Sbjct: 278 P 278

BLAST of CmaCh17G000500.1 vs. TrEMBL
Match: A0A0A9EFU5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 1

Query: 140 SQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLRSTLRSEPSPEPNQ 199
           S  PG DRAT S P  GT GV M AAATAEP+RS I TF PFLSL  ++ S   P  +Q
Sbjct: 2   SHAPGLDRATVSPPGAGTNGVAMNAAATAEPDRSWITTFHPFLSLLISISSSSPPVLDQ 60

BLAST of CmaCh17G000500.1 vs. TrEMBL
Match: A0A0A9GDF0_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 1

Query: 140 SQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLRSTLRSEPSPEPNQS 199
           S  PG DRAT S P  GT GV M AAA AEP+RS I TFQPFLSL  ++     PE +Q 
Sbjct: 2   SHAPGLDRATVSPPGAGTNGVAMNAAAMAEPDRSWITTFQPFLSLLISMSFSSPPELDQY 61

Query: 200 EP 202
            P
Sbjct: 62  CP 63

BLAST of CmaCh17G000500.1 vs. NCBI nr
Match: gi|976929401|gb|KVI12251.1| (hypothetical protein Ccrd_009322 [Cynara cardunculus var. scolymus])

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1

Query: 4   RDALLIFLRNGLHASMLRPTAAASAMKMAASSVHVTCRMASCTIGLLLFPSPCTLQLMTK 63
           R++ L      L AS+LR  AA SA K AAS++HVTC   +CTIGLL+FPSP TL+L+T 
Sbjct: 218 RNSFLSLREKSLQASILRSIAAESATKRAASAIHVTCCTPTCTIGLLVFPSPSTLELITN 277

Query: 64  P 65
           P
Sbjct: 278 P 278

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9D7Z2_ARUDO3.9e-1937.57Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9PA10_ARUDO2.4e-0860.94Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A103YNA3_CYNCS3.4e-0755.74Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009322 PE=4 ... [more]
A0A0A9EFU5_ARUDO1.7e-0657.63Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9GDF0_ARUDO2.9e-0656.45Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|976929401|gb|KVI12251.1|4.9e-0755.74hypothetical protein Ccrd_009322 [Cynara cardunculus var. scolymus][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh17G000500CmaCh17G000500gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh17G000500.1CmaCh17G000500.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh17G000500.1.CDS.4CmaCh17G000500.1.CDS.4CDS
CmaCh17G000500.1.CDS.3CmaCh17G000500.1.CDS.3CDS
CmaCh17G000500.1.CDS.2CmaCh17G000500.1.CDS.2CDS
CmaCh17G000500.1.CDS.1CmaCh17G000500.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh17G000500.1.exon.4CmaCh17G000500.1.exon.4exon
CmaCh17G000500.1.exon.3CmaCh17G000500.1.exon.3exon
CmaCh17G000500.1.exon.2CmaCh17G000500.1.exon.2exon
CmaCh17G000500.1.exon.1CmaCh17G000500.1.exon.1exon