CmaCh17G000500 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G000500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 220576 .. 221504 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGCCTAGTAGCATTATTGATTTCAACCCTATGGTCGCTATTAACTTCGAGATATTATAATTCTTTTGAGTTTTCTTGATAATCAAATGTCGTTGGATCAGGTGGCACAACTTAGAATCACATACTGTACAAAATGCTAAATTTTATAGCCTTCACAGATAATTTCATACAGATCTGTATGTGCATCTTTGTTTATGCTTCTACACATCAATTATACCTTACAAACACTTCATTTTCCTTTAGAATGCCGAGACGCTCTCCTAATCTTCCTTCGGAATGGCCTACACGCCTCAATGCTGAGACCAACGGCTGCAGCTAGTGCCATGAAAATGGCAGCATCCTCTGTACATGTCACATGTCGCATGGCGAGTTGCACCATTGGCTTACTGCTCTTTCCTTCCCCTTGTACTCTACAACTCATGACGAAACCTCCGACCAGTTGGCCTAATGCTGCAAAGTCTCCGCTGCTCTGCGGGCTTGGTATTGGAACTGTTGCTGCTCGTAACTGTTTGTCAGTGTCTATGAAGAACTCCCCACCTCTCTCAGCATTGATATGGATCTCAGACATGAGAAGTTCCCCTCCCTCTTGAGCTTCGGAGAGAAGGTGAAAGCGACAGCAGACAGTGTCTCTAATTCCTCGCTCGCGCCATGCCTCGAGCTTTCCCCATGGCTGCCAACTTTCAGGTATGCAAACATCAGGACGAACAATCAGCCAAGACCCGGGGTTTGACCGGGCAACCCAATCGCAACCTGCTGATGGCACAAAGGGAGTAGTTATGAAGGCTGCTGCAACAGCCGAGCCAGAAAGATCATGTATCTTCACCTTCCAGCCTTTTCTTTCTCTCCGCTCGACCTTGAGGTCTGAGCCATCACCAGAACCTAACCAATCTGAGCCATCACCAGAACCTGACCCTGACCAATAG

mRNA sequence

ATGGAATGCCGAGACGCTCTCCTAATCTTCCTTCGGAATGGCCTACACGCCTCAATGCTGAGACCAACGGCTGCAGCTAGTGCCATGAAAATGGCAGCATCCTCTGTACATGTCACATGTCGCATGGCGAGTTGCACCATTGGCTTACTGCTCTTTCCTTCCCCTTGTACTCTACAACTCATGACGAAACCTCCGACCAGTTGGCCTAATGCTGCAAAGTCTCCGCTGCTCTGCGGGCTTGGTATTGGAACTGTTGCTGCTCAACTCCCCACCTCTCTCAGCATTGATATGGATCTCAGACATGAGAAGTTCCCCTCCCTCTTGAGCTTCGGAGAGAAGGTGAAAGCGACAGCAGACAGTGTCTCTAATTCCTCGCTCGCGCCATGCCTCGAGCTTTCCCCATGGCTGCCAACTTTCAGCCAAGACCCGGGGTTTGACCGGGCAACCCAATCGCAACCTGCTGATGGCACAAAGGGAGTAGTTATGAAGGCTGCTGCAACAGCCGAGCCAGAAAGATCATGTATCTTCACCTTCCAGCCTTTTCTTTCTCTCCGCTCGACCTTGAGGTCTGAGCCATCACCAGAACCTAACCAATCTGAGCCATCACCAGAACCTGACCCTGACCAATAG

Coding sequence (CDS)

ATGGAATGCCGAGACGCTCTCCTAATCTTCCTTCGGAATGGCCTACACGCCTCAATGCTGAGACCAACGGCTGCAGCTAGTGCCATGAAAATGGCAGCATCCTCTGTACATGTCACATGTCGCATGGCGAGTTGCACCATTGGCTTACTGCTCTTTCCTTCCCCTTGTACTCTACAACTCATGACGAAACCTCCGACCAGTTGGCCTAATGCTGCAAAGTCTCCGCTGCTCTGCGGGCTTGGTATTGGAACTGTTGCTGCTCAACTCCCCACCTCTCTCAGCATTGATATGGATCTCAGACATGAGAAGTTCCCCTCCCTCTTGAGCTTCGGAGAGAAGGTGAAAGCGACAGCAGACAGTGTCTCTAATTCCTCGCTCGCGCCATGCCTCGAGCTTTCCCCATGGCTGCCAACTTTCAGCCAAGACCCGGGGTTTGACCGGGCAACCCAATCGCAACCTGCTGATGGCACAAAGGGAGTAGTTATGAAGGCTGCTGCAACAGCCGAGCCAGAAAGATCATGTATCTTCACCTTCCAGCCTTTTCTTTCTCTCCGCTCGACCTTGAGGTCTGAGCCATCACCAGAACCTAACCAATCTGAGCCATCACCAGAACCTGACCCTGACCAATAG

Protein sequence

MECRDALLIFLRNGLHASMLRPTAAASAMKMAASSVHVTCRMASCTIGLLLFPSPCTLQLMTKPPTSWPNAAKSPLLCGLGIGTVAAQLPTSLSIDMDLRHEKFPSLLSFGEKVKATADSVSNSSLAPCLELSPWLPTFSQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLRSTLRSEPSPEPNQSEPSPEPDPDQ
BLAST of CmaCh17G000500 vs. TrEMBL
Match: A0A0A9D7Z2_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-19
Identity = 71/189 (37.57%), Postives = 94/189 (49.74%), Query Frame = 1

Query: 19  MLRPTAAASAMKMAASSVHVTCRMASCTIGLLLFPSPCTLQLMTKPPTSWPNAAKSPLLC 78
           M R TAA SA K A S +HVTC   +CT+G L FPSP T++ MTKPP    N   +PL+ 
Sbjct: 1   MQRSTAADSATKTATSPMHVTCCTPTCTVGRLAFPSPSTVEPMTKPPA---NGQAAPLVA 60

Query: 79  GLGIGTVAAQLPTSLSIDMDLRHEKFPSLLSFGEKVKATADSVSNSSLAPC--------- 138
               G VA  +       + +      +  S+G + K ++    ++S  PC         
Sbjct: 61  S---GNVAGSMKNRPPRLVLMEDSAMGTAHSWGPESKTSSSRYPSASTCPCSRHASSRAQ 120

Query: 139 -LELSPWLPT---FSQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLR 195
             +L    P     SQ+PG  R T+ +P DGT GV M AAAT EP+RS + T QP    R
Sbjct: 121 GFQLDGPAPVAWRMSQEPGLARETRPEPGDGTNGVTMDAAATGEPDRSWMVTVQPLRCSR 180

BLAST of CmaCh17G000500 vs. TrEMBL
Match: A0A0A9PA10_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 1

Query: 138 TFSQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLRSTLRSEPSPEPN 197
           T SQ PG DRAT S P  GT GV M AAATAEP+RS I TFQPFLS   ++ S P P P+
Sbjct: 65  TMSQAPGLDRATVSPPGAGTNGVAMNAAATAEPDRSWITTFQPFLSRLISMSSSP-PAPD 124

Query: 198 QSEP 202
           Q  P
Sbjct: 125 QYCP 127

BLAST of CmaCh17G000500 vs. TrEMBL
Match: A0A103YNA3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009322 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1

Query: 4   RDALLIFLRNGLHASMLRPTAAASAMKMAASSVHVTCRMASCTIGLLLFPSPCTLQLMTK 63
           R++ L      L AS+LR  AA SA K AAS++HVTC   +CTIGLL+FPSP TL+L+T 
Sbjct: 218 RNSFLSLREKSLQASILRSIAAESATKRAASAIHVTCCTPTCTIGLLVFPSPSTLELITN 277

Query: 64  P 65
           P
Sbjct: 278 P 278

BLAST of CmaCh17G000500 vs. TrEMBL
Match: A0A0A9EFU5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 1

Query: 140 SQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLRSTLRSEPSPEPNQ 199
           S  PG DRAT S P  GT GV M AAATAEP+RS I TF PFLSL  ++ S   P  +Q
Sbjct: 2   SHAPGLDRATVSPPGAGTNGVAMNAAATAEPDRSWITTFHPFLSLLISISSSSPPVLDQ 60

BLAST of CmaCh17G000500 vs. TrEMBL
Match: A0A0A9GDF0_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 1

Query: 140 SQDPGFDRATQSQPADGTKGVVMKAAATAEPERSCIFTFQPFLSLRSTLRSEPSPEPNQS 199
           S  PG DRAT S P  GT GV M AAA AEP+RS I TFQPFLSL  ++     PE +Q 
Sbjct: 2   SHAPGLDRATVSPPGAGTNGVAMNAAAMAEPDRSWITTFQPFLSLLISMSFSSPPELDQY 61

Query: 200 EP 202
            P
Sbjct: 62  CP 63

BLAST of CmaCh17G000500 vs. NCBI nr
Match: gi|976929401|gb|KVI12251.1| (hypothetical protein Ccrd_009322 [Cynara cardunculus var. scolymus])

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1

Query: 4   RDALLIFLRNGLHASMLRPTAAASAMKMAASSVHVTCRMASCTIGLLLFPSPCTLQLMTK 63
           R++ L      L AS+LR  AA SA K AAS++HVTC   +CTIGLL+FPSP TL+L+T 
Sbjct: 218 RNSFLSLREKSLQASILRSIAAESATKRAASAIHVTCCTPTCTIGLLVFPSPSTLELITN 277

Query: 64  P 65
           P
Sbjct: 278 P 278

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9D7Z2_ARUDO3.9e-1937.57Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9PA10_ARUDO2.4e-0860.94Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A103YNA3_CYNCS3.4e-0755.74Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009322 PE=4 ... [more]
A0A0A9EFU5_ARUDO1.7e-0657.63Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9GDF0_ARUDO2.9e-0656.45Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|976929401|gb|KVI12251.1|4.9e-0755.74hypothetical protein Ccrd_009322 [Cynara cardunculus var. scolymus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G000500.1CmaCh17G000500.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G000500Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G000500Cucurbita pepo (Zucchini)cmacpeB382
CmaCh17G000500Cucurbita pepo (Zucchini)cmacpeB402
CmaCh17G000500Cucurbita pepo (Zucchini)cmacpeB411
CmaCh17G000500Bottle gourd (USVL1VR-Ls)cmalsiB334
CmaCh17G000500Bottle gourd (USVL1VR-Ls)cmalsiB356
CmaCh17G000500Cucumber (Gy14) v2cgybcmaB345
CmaCh17G000500Cucumber (Gy14) v2cgybcmaB753
CmaCh17G000500Melon (DHL92) v3.6.1cmamedB368
CmaCh17G000500Melon (DHL92) v3.6.1cmamedB398
CmaCh17G000500Silver-seed gourdcarcmaB0314
CmaCh17G000500Silver-seed gourdcarcmaB0876
CmaCh17G000500Silver-seed gourdcarcmaB1321
CmaCh17G000500Silver-seed gourdcarcmaB1487
CmaCh17G000500Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G000500Cucumber (Chinese Long) v3cmacucB0441
CmaCh17G000500Watermelon (97103) v2cmawmbB370
CmaCh17G000500Watermelon (97103) v2cmawmbB366
CmaCh17G000500Wax gourdcmawgoB0465
CmaCh17G000500Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G000500Cucurbita maxima (Rimu)cmacmaB373
CmaCh17G000500Cucurbita maxima (Rimu)cmacmaB370
CmaCh17G000500Cucurbita maxima (Rimu)cmacmaB388
CmaCh17G000500Cucumber (Gy14) v1cgycmaB0715
CmaCh17G000500Cucumber (Gy14) v1cgycmaB0998
CmaCh17G000500Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G000500Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G000500Cucurbita moschata (Rifu)cmacmoB362
CmaCh17G000500Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G000500Cucurbita moschata (Rifu)cmacmoB381
CmaCh17G000500Wild cucumber (PI 183967)cmacpiB361
CmaCh17G000500Wild cucumber (PI 183967)cmacpiB373
CmaCh17G000500Cucumber (Chinese Long) v2cmacuB357
CmaCh17G000500Cucumber (Chinese Long) v2cmacuB369
CmaCh17G000500Melon (DHL92) v3.5.1cmameB316
CmaCh17G000500Melon (DHL92) v3.5.1cmameB343
CmaCh17G000500Watermelon (Charleston Gray)cmawcgB319
CmaCh17G000500Watermelon (Charleston Gray)cmawcgB323
CmaCh17G000500Watermelon (97103) v1cmawmB344
CmaCh17G000500Watermelon (97103) v1cmawmB353