CmaCh16G012610.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G012610.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L2
Location	Cma_Chr16 : 9521112 .. 9522017 (+)
Sequence length	906

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAACGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGCTCGAAGAGCCCCTTTACTATTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

mRNA sequence

ATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAACGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGCTCGAAGAGCCCCTTTACTATTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

Coding sequence (CDS)

ATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAACGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGCTCGAAGAGCCCCTTTACTATTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

Protein sequence

MISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV

Homology

[Close]

BLAST of CmaCh16G012610.1 vs. Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 5.4e-124
Identity = 236/300 (78.67%), Postives = 252/300 (84.00%), Query Frame = 1


Query: 12  RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRS 71
           RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRS
Sbjct: 7   RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRS 66

Query: 72  SRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSP 131
           S+IAPVRWI+G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSP
Sbjct: 67  SQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSP 126

Query: 132 GRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFG 191
           G MAAYVVVGLPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F 
Sbjct: 127 GLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFA 186

Query: 192 SSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWR 251
           SS GFPRIAVAGAKPAFFAPRMR+KVRGK+TFSLCEV+K RTHSILWAHR+K KA L W+
Sbjct: 187 SSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQ 246

Query: 252 SFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVNRAPV 301
           SFRRQ+T GLVG A H +SKP+TDQG+LPAKPIGE             KDGACKV+RAPV
Sbjct: 247 SFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of CmaCh16G012610.1 vs. Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-48
Identity = 150/306 (49.02%), Postives = 171/306 (55.88%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQS +GRALR FTLSTGKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERI
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIA VRWIEGV   RQRK KTIEEFA PRKILE TT TI  LFSFSS    +
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTC--AKDVFFSAFSSQ 184
            Q + A  S G    +  + +    P            G  +   C   K        + 
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 185 KTKGETASLSFGSSLGFPRIAVAGA----KPAFFAPRMREKVRGKNTFSLCEVRKWRTHS 244
           + K   A+LS+ S      + + GA    +    A +     R    ++LC  R     S
Sbjct: 181 RIK-RKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRP----S 240

Query: 245 ILWAHRMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAK-PIGEGPKDGACK 301
            L A R   KA L   + R                      GSLPAK PIGEGPKDGA K
Sbjct: 241 YLHASRSFYKALLPVEASR---------------------FGSLPAKPPIGEGPKDGAYK 280

[Close]

BLAST of CmaCh16G012610.1 vs. Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=3 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-48
Identity = 150/306 (49.02%), Postives = 171/306 (55.88%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQS +GRALR FTLSTGKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERI
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIA VRWIEGV   RQRK KTIEEFA PRKILE TT TI  LFSFSS    +
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTC--AKDVFFSAFSSQ 184
            Q + A  S G    +  + +    P            G  +   C   K        + 
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 185 KTKGETASLSFGSSLGFPRIAVAGA----KPAFFAPRMREKVRGKNTFSLCEVRKWRTHS 244
           + K   A+LS+ S      + + GA    +    A +     R    ++LC  R     S
Sbjct: 181 RIK-RKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRP----S 240

Query: 245 ILWAHRMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAK-PIGEGPKDGACK 301
            L A R   KA L   + R                      GSLPAK PIGEGPKDGA K
Sbjct: 241 YLHASRSFYKALLPVEASR---------------------FGSLPAKPPIGEGPKDGAYK 280

[Close]

BLAST of CmaCh16G012610.1 vs. Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-48
Identity = 150/306 (49.02%), Postives = 171/306 (55.88%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQS +GRALR FTLSTGKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERI
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIA VRWIEGV   RQRK KTIEEFA PRKILE TT TI  LFSFSS    +
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTC--AKDVFFSAFSSQ 184
            Q + A  S G    +  + +    P            G  +   C   K        + 
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 185 KTKGETASLSFGSSLGFPRIAVAGA----KPAFFAPRMREKVRGKNTFSLCEVRKWRTHS 244
           + K   A+LS+ S      + + GA    +    A +     R    ++LC  R     S
Sbjct: 181 RIK-RKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRP----S 240

Query: 245 ILWAHRMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAK-PIGEGPKDGACK 301
            L A R   KA L   + R                      GSLPAK PIGEGPKDGA K
Sbjct: 241 YLHASRSFYKALLPVEASR---------------------FGSLPAKPPIGEGPKDGAYK 280

[Close]

BLAST of CmaCh16G012610.1 vs. Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 5.2e-34
Identity = 109/238 (45.80%), Postives = 130/238 (54.62%), Query Frame = 1


Query: 10  EGRALRQFTLSTGK-SAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDP 69
           +G+AL+Q T    + SAGRNSSGRITVFHRGGGSKRLQR+ID KRSTSSMGIVERIEYDP
Sbjct: 7   KGKALKQLTFHLKRNSAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDP 66

Query: 70  NRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVAC 129
           NRSS IA VRWIEGV +   +     A  R+  E        LFSFSS P          
Sbjct: 67  NRSSWIALVRWIEGVLRPGKRLAFSKANSRR--EKNMFFFGLLFSFSSLP---------- 126

Query: 130 FSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASL 189
               R A  +       + PC +     +S   G++   AK+V                 
Sbjct: 127 ----RQAQRIKYEKTRALRPCEQ--ILESSWVLGTRDLRAKEVSLG-------------- 186

Query: 190 SFGSSLGFPRIAVAGAKPAFFAPRMR-----------EKVRGKNTFSLCEVRKWRTHS 236
             GS LG P IAVAGAKPAFFA RM+             +RG+NTFS  E ++W+T S
Sbjct: 187 PLGSFLGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQS 212

[Close]

BLAST of CmaCh16G012610.1 vs. TrEMBL
Match: D5I3E9_CUCPE (Ribosomal protein L2 OS=Cucurbita pepo GN=rpl2 PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 3.4e-157
Identity = 287/296 (96.96%), Postives = 290/296 (97.97%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 124
           EYDPNRSSRIA VRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSS PGKVDQR
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQR 120

Query: 125 KVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGE 184
           KVACFSPG+MAAYVVVGLPTR+PPCSKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGE
Sbjct: 121 KVACFSPGQMAAYVVVGLPTRIPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 185 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 244
           TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR
Sbjct: 181 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 240

Query: 245 KAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           KAALDW+SFRRQETDGLVGGAEHNESKPETD  SLPAKPIGEGPKDGACKVNRAPV
Sbjct: 241 KAALDWQSFRRQETDGLVGGAEHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh16G012610.1 vs. TrEMBL
Match: D5I399_CITLA (Ribosomal protein L2 OS=Citrullus lanatus GN=rpl2 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 4.9e-156
Identity = 285/296 (96.28%), Postives = 289/296 (97.64%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 124
           EYDPNRSSRIA VRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 120

Query: 125 KVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGE 184
           KVACFSPGRMAAYVVVGLPTRMPP SKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGE
Sbjct: 121 KVACFSPGRMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 185 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 244
           TASLSFGSS GFPR+AVAGAKPAFFAPRMR+K+RGKNTFSLCEVRKWRTHSILWAHR+KR
Sbjct: 181 TASLSFGSSFGFPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKR 240

Query: 245 KAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           KAAL WRSFRRQET GLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 241 KAALSWRSFRRQETLGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh16G012610.1 vs. TrEMBL
Match: G3EIZ1_CUCSA (Ribosomal protein L2 OS=Cucumis sativus GN=rpl2 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 1.2e-146
Identity = 274/300 (91.33%), Postives = 278/300 (92.67%), Query Frame = 1


Query: 2   ISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIV 61
           IST RQSQEGRALRQFTLSTGKSAGRNSSGRITVFH GGGSKRLQRRIDLKRSTSSMGIV
Sbjct: 4   ISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHLGGGSKRLQRRIDLKRSTSSMGIV 63

Query: 62  ERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 121
           ERIEYDPNRSSRI PVRWIEGVRQRKCKT EEFAP  +ILEPTTTTIRGLFSFSSPPGKV
Sbjct: 64  ERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPKPQILEPTTTTIRGLFSFSSPPGKV 123

Query: 122 DQRKVACFSPGRMAAYVVVGLPT-RMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQK 181
           DQRKVA FSPGRMAAYVVVGLPT RMPP S+SP T T KGAGSKKTCAKD+FFSAFSSQK
Sbjct: 124 DQRKVASFSPGRMAAYVVVGLPTTRMPPWSRSPDTSTRKGAGSKKTCAKDLFFSAFSSQK 183

Query: 182 TKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAH 241
           TKGETASLSFGSS  FPR+AVAGAKPAFFAPRMREKVRGK TFSLCEVRKWRTHSILWAH
Sbjct: 184 TKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAH 243

Query: 242 RMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           RMK KAAL WRSFRRQET GLVGGAEH ESK E DQGSLPAKPIGEGPKDGACKVNR PV
Sbjct: 244 RMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh16G012610.1 vs. TrEMBL
Match: G3EU27_CUCME (Ribosomal protein L2 OS=Cucumis melo subsp. melo GN=rpl2 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 4.6e-146
Identity = 274/300 (91.33%), Postives = 277/300 (92.33%), Query Frame = 1


Query: 2   ISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIV 61
           IST RQSQEGRALRQFTLSTGKSAGRNSSGRITVF  GGGSKRLQRRIDLKRSTSSMGIV
Sbjct: 4   ISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFRLGGGSKRLQRRIDLKRSTSSMGIV 63

Query: 62  ERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 121
           ERIEYDPNRSSRI PVRWIEGVRQRKCKT EEFAP  +ILEPTTTTIRGLFSFSSPPGKV
Sbjct: 64  ERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKV 123

Query: 122 DQRKVACFSPGRMAAYVVVGLPT-RMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQK 181
           DQRKVA FSPGRMAAYVVVGLPT RMPP SKSP T T KGAGSKKTCAKD+FFSAFSSQK
Sbjct: 124 DQRKVASFSPGRMAAYVVVGLPTTRMPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQK 183

Query: 182 TKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAH 241
           TKGETASLSFGSS  FPR+AVAGAKPAFFAPRMREKVRGK TFSLCEVRKWRTHSILWAH
Sbjct: 184 TKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAH 243

Query: 242 RMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           RMK KAAL WRSFRRQET GLVGGAEH ESK E DQGSLPAKPIGEGPKDGACKVNR PV
Sbjct: 244 RMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh16G012610.1 vs. TrEMBL
Match: A5BK62_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029794 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 1.7e-145
Identity = 274/300 (91.33%), Postives = 281/300 (93.67%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVE I
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVEWI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIAPVRWIEGV   RQRKC TIEEFAPPRKILEPTTTTIRGLFSFSS PGKV
Sbjct: 61  EYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEEFAPPRKILEPTTTTIRGLFSFSSLPGKV 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKT 184
           DQRKVACFSPG MAAYVVVGLPTRMPP SKSPF  TSKGAGSKKTCAKDVFFSAFSS K 
Sbjct: 121 DQRKVACFSPGPMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSPKA 180

Query: 185 KGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHR 244
           KGET+SLSFGSS GFPRIAVAGAKPAFFAPRMREK+RGKNTFSLCEVRKWRTHSILWAHR
Sbjct: 181 KGETSSLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHR 240

Query: 245 MKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV 302
           +KRKAAL W+SFRRQET GLVG AEHNESKP+TDQG   +KPIGEGPKDGACKV+RAPVV
Sbjct: 241 IKRKAALSWQSFRRQETLGLVGAAEHNESKPKTDQG-FYSKPIGEGPKDGACKVDRAPVV 297

[Close]

BLAST of CmaCh16G012610.1 vs. TAIR10
Match: ATMG00560.1 (ATMG00560.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 445.3 bits (1144), Expect = 3.0e-125
Identity = 236/300 (78.67%), Postives = 252/300 (84.00%), Query Frame = 1


Query: 12  RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRS 71
           RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRS
Sbjct: 7   RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRS 66

Query: 72  SRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSP 131
           S+IAPVRWI+G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSP
Sbjct: 67  SQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSP 126

Query: 132 GRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFG 191
           G MAAYVVVGLPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F 
Sbjct: 127 GLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFA 186

Query: 192 SSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWR 251
           SS GFPRIAVAGAKPAFFAPRMR+KVRGK+TFSLCEV+K RTHSILWAHR+K KA L W+
Sbjct: 187 SSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQ 246

Query: 252 SFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVNRAPV 301
           SFRRQ+T GLVG A H +SKP+TDQG+LPAKPIGE             KDGACKV+RAPV
Sbjct: 247 SFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of CmaCh16G012610.1 vs. TAIR10
Match: AT2G07715.1 (AT2G07715.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 437.2 bits (1123), Expect = 8.3e-123
Identity = 232/296 (78.38%), Postives = 248/296 (83.78%), Query Frame = 1


Query: 12  RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRS 71
           RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRS
Sbjct: 7   RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRS 66

Query: 72  SRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSP 131
           S+IAPVRWI+G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSP
Sbjct: 67  SQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSP 126

Query: 132 GRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFG 191
           G MAAYVVVGLPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F 
Sbjct: 127 GLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSLKAKRETASLAFA 186

Query: 192 SSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWR 251
           SS GFPRIAVAGAKPAFFAPRMR+KVRGK+TFSLCEV+K RTHSILWAHR+K KA L W+
Sbjct: 187 SSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQ 246

Query: 252 SFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVN 297
           SFRRQ+T GLVG A H +SKP+TDQG+LPAKPIGE             KDGACKV+
Sbjct: 247 SFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVD 302

[Close]

BLAST of CmaCh16G012610.1 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 55.1 bits (131), Expect = 8.8e-08
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 26  GRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSM-GIVERIEYDPNRSSRIAPVRWIEGVR 85
           GRN+ G IT  HRGGG KRL R+ID +R+   + G +  IEYDPNR++ I  + + +G +
Sbjct: 40  GRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]

BLAST of CmaCh16G012610.1 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 55.1 bits (131), Expect = 8.8e-08
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 26  GRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSM-GIVERIEYDPNRSSRIAPVRWIEGVR 85
           GRN+ G IT  HRGGG KRL R+ID +R+   + G +  IEYDPNR++ I  + + +G +
Sbjct: 40  GRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]

BLAST of CmaCh16G012610.1 vs. NCBI nr
Match: gi|295311698|ref|YP_003587363.1| (ribosomal protein L2 [Cucurbita pepo])

HSP 1 Score: 562.4 bits (1448), Expect = 4.8e-157
Identity = 287/296 (96.96%), Postives = 290/296 (97.97%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 124
           EYDPNRSSRIA VRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSS PGKVDQR
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQR 120

Query: 125 KVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGE 184
           KVACFSPG+MAAYVVVGLPTR+PPCSKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGE
Sbjct: 121 KVACFSPGQMAAYVVVGLPTRIPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 185 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 244
           TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR
Sbjct: 181 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 240

Query: 245 KAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           KAALDW+SFRRQETDGLVGGAEHNESKPETD  SLPAKPIGEGPKDGACKVNRAPV
Sbjct: 241 KAALDWQSFRRQETDGLVGGAEHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh16G012610.1 vs. NCBI nr
Match: gi|295311655|ref|YP_003587229.1| (ribosomal protein L2 [Citrullus lanatus])

HSP 1 Score: 558.5 bits (1438), Expect = 7.0e-156
Identity = 285/296 (96.28%), Postives = 289/296 (97.64%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 124
           EYDPNRSSRIA VRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 120

Query: 125 KVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGE 184
           KVACFSPGRMAAYVVVGLPTRMPP SKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGE
Sbjct: 121 KVACFSPGRMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 185 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 244
           TASLSFGSS GFPR+AVAGAKPAFFAPRMR+K+RGKNTFSLCEVRKWRTHSILWAHR+KR
Sbjct: 181 TASLSFGSSFGFPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKR 240

Query: 245 KAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           KAAL WRSFRRQET GLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 241 KAALSWRSFRRQETLGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh16G012610.1 vs. NCBI nr
Match: gi|346683377|ref|YP_004849339.1| (ribosomal protein L2 [Cucumis sativus])

HSP 1 Score: 527.3 bits (1357), Expect = 1.7e-146
Identity = 274/300 (91.33%), Postives = 278/300 (92.67%), Query Frame = 1


Query: 2   ISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIV 61
           IST RQSQEGRALRQFTLSTGKSAGRNSSGRITVFH GGGSKRLQRRIDLKRSTSSMGIV
Sbjct: 4   ISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHLGGGSKRLQRRIDLKRSTSSMGIV 63

Query: 62  ERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 121
           ERIEYDPNRSSRI PVRWIEGVRQRKCKT EEFAP  +ILEPTTTTIRGLFSFSSPPGKV
Sbjct: 64  ERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPKPQILEPTTTTIRGLFSFSSPPGKV 123

Query: 122 DQRKVACFSPGRMAAYVVVGLPT-RMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQK 181
           DQRKVA FSPGRMAAYVVVGLPT RMPP S+SP T T KGAGSKKTCAKD+FFSAFSSQK
Sbjct: 124 DQRKVASFSPGRMAAYVVVGLPTTRMPPWSRSPDTSTRKGAGSKKTCAKDLFFSAFSSQK 183

Query: 182 TKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAH 241
           TKGETASLSFGSS  FPR+AVAGAKPAFFAPRMREKVRGK TFSLCEVRKWRTHSILWAH
Sbjct: 184 TKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAH 243

Query: 242 RMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           RMK KAAL WRSFRRQET GLVGGAEH ESK E DQGSLPAKPIGEGPKDGACKVNR PV
Sbjct: 244 RMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh16G012610.1 vs. NCBI nr
Match: gi|345034425|gb|AEN56111.1| (ribosomal protein L2 [Cucumis melo subsp. melo])

HSP 1 Score: 525.4 bits (1352), Expect = 6.5e-146
Identity = 274/300 (91.33%), Postives = 277/300 (92.33%), Query Frame = 1


Query: 2   ISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIV 61
           IST RQSQEGRALRQFTLSTGKSAGRNSSGRITVF  GGGSKRLQRRIDLKRSTSSMGIV
Sbjct: 4   ISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFRLGGGSKRLQRRIDLKRSTSSMGIV 63

Query: 62  ERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 121
           ERIEYDPNRSSRI PVRWIEGVRQRKCKT EEFAP  +ILEPTTTTIRGLFSFSSPPGKV
Sbjct: 64  ERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKV 123

Query: 122 DQRKVACFSPGRMAAYVVVGLPT-RMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQK 181
           DQRKVA FSPGRMAAYVVVGLPT RMPP SKSP T T KGAGSKKTCAKD+FFSAFSSQK
Sbjct: 124 DQRKVASFSPGRMAAYVVVGLPTTRMPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQK 183

Query: 182 TKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAH 241
           TKGETASLSFGSS  FPR+AVAGAKPAFFAPRMREKVRGK TFSLCEVRKWRTHSILWAH
Sbjct: 184 TKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAH 243

Query: 242 RMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           RMK KAAL WRSFRRQET GLVGGAEH ESK E DQGSLPAKPIGEGPKDGACKVNR PV
Sbjct: 244 RMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh16G012610.1 vs. NCBI nr
Match: gi|147791171|emb|CAN61455.1| (hypothetical protein VITISV_029794 [Vitis vinifera])

HSP 1 Score: 523.5 bits (1347), Expect = 2.5e-145
Identity = 274/300 (91.33%), Postives = 281/300 (93.67%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVE I
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVEWI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIAPVRWIEGV   RQRKC TIEEFAPPRKILEPTTTTIRGLFSFSS PGKV
Sbjct: 61  EYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEEFAPPRKILEPTTTTIRGLFSFSSLPGKV 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKT 184
           DQRKVACFSPG MAAYVVVGLPTRMPP SKSPF  TSKGAGSKKTCAKDVFFSAFSS K 
Sbjct: 121 DQRKVACFSPGPMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSPKA 180

Query: 185 KGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHR 244
           KGET+SLSFGSS GFPRIAVAGAKPAFFAPRMREK+RGKNTFSLCEVRKWRTHSILWAHR
Sbjct: 181 KGETSSLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHR 240

Query: 245 MKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV 302
           +KRKAAL W+SFRRQET GLVG AEHNESKP+TDQG   +KPIGEGPKDGACKV+RAPVV
Sbjct: 241 IKRKAALSWQSFRRQETLGLVGAAEHNESKPKTDQG-FYSKPIGEGPKDGACKVDRAPVV 297

The following BLAST results are available for this feature:

BLAST of CmaCh16G012610.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM02_ARATH	5.4e-124	78.67	60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=...	[more]
RM02_ORYSJ	2.2e-48	49.02	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 ...	[more]
RM02_ORYSI	2.2e-48	49.02	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE...	[more]
RM02_ORYSA	2.2e-48	49.02	60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1	[more]
RM02_MARPO	5.2e-34	45.80	60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV...	[more]

BLAST of CmaCh16G012610.1 vs. TrEMBL


Match Name	E-value	Identity	Description
D5I3E9_CUCPE	3.4e-157	96.96	Ribosomal protein L2 OS=Cucurbita pepo GN=rpl2 PE=4 SV=1	[more]
D5I399_CITLA	4.9e-156	96.28	Ribosomal protein L2 OS=Citrullus lanatus GN=rpl2 PE=4 SV=1	[more]
G3EIZ1_CUCSA	1.2e-146	91.33	Ribosomal protein L2 OS=Cucumis sativus GN=rpl2 PE=4 SV=1	[more]
G3EU27_CUCME	4.6e-146	91.33	Ribosomal protein L2 OS=Cucumis melo subsp. melo GN=rpl2 PE=4 SV=1	[more]
A5BK62_VITVI	1.7e-145	91.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029794 PE=4 SV=1	[more]

BLAST of CmaCh16G012610.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00560.1	3.0e-125	78.67	ATMG00560.1 Nucleic acid-binding, OB-fold-like protein	[more]
AT2G07715.1	8.3e-123	78.38	Nucleic acid-binding, OB-fold-like protein	[more]
ATCG00830.1	8.8e-08	45.90	ATCG00830.1 ribosomal protein L2	[more]
ATCG01310.1	8.8e-08	45.90	ATCG01310.1 ribosomal protein L2	[more]

BLAST of CmaCh16G012610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|295311698\|ref\|YP_003587363.1\|	4.8e-157	96.96	ribosomal protein L2 [Cucurbita pepo]	[more]
gi\|295311655\|ref\|YP_003587229.1\|	7.0e-156	96.28	ribosomal protein L2 [Citrullus lanatus]	[more]
gi\|346683377\|ref\|YP_004849339.1\|	1.7e-146	91.33	ribosomal protein L2 [Cucumis sativus]	[more]
gi\|345034425\|gb\|AEN56111.1\|	6.5e-146	91.33	ribosomal protein L2 [Cucumis melo subsp. melo]	[more]
gi\|147791171\|emb\|CAN61455.1\|	2.5e-145	91.33	hypothetical protein VITISV_029794 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002171	Ribosomal_L2
IPR012340	NA-bd_OB-fold
IPR022666	Rbsml_prot_L2_RNA-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh16G012610	CmaCh16G012610	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh16G012610.1	CmaCh16G012610.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G012610.1.exon.1	CmaCh16G012610.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G012610.1.CDS.1	CmaCh16G012610.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 12..87 score: 8.6
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 26..102 score: 1.1
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 5..82 score: 8.5
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 9..83 score: 9.25
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 26..78 score: 6.6
None	No IPR available	PANTHER	PTHR13691:SF20	60S RIBOSOMAL PROTEIN L2-RELATED	coord: 12..87 score: 8.6