CmaCh16G012610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G012610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L2
Location	Cma_Chr16 : 9521112 .. 9522017 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAACGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGCTCGAAGAGCCCCTTTACTATTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

mRNA sequence

ATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAACGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGCTCGAAGAGCCCCTTTACTATTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

Coding sequence (CDS)

ATGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCTGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAACGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGCTCGAAGAGCCCCTTTACTATTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

Protein sequence

MISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV

Homology

[Close]

BLAST of CmaCh16G012610 vs. Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 5.4e-124
Identity = 236/300 (78.67%), Postives = 252/300 (84.00%), Query Frame = 1


Query: 12  RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRS 71
           RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRS
Sbjct: 7   RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRS 66

Query: 72  SRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSP 131
           S+IAPVRWI+G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSP
Sbjct: 67  SQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSP 126

Query: 132 GRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFG 191
           G MAAYVVVGLPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F 
Sbjct: 127 GLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFA 186

Query: 192 SSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWR 251
           SS GFPRIAVAGAKPAFFAPRMR+KVRGK+TFSLCEV+K RTHSILWAHR+K KA L W+
Sbjct: 187 SSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQ 246

Query: 252 SFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVNRAPV 301
           SFRRQ+T GLVG A H +SKP+TDQG+LPAKPIGE             KDGACKV+RAPV
Sbjct: 247 SFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of CmaCh16G012610 vs. Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-48
Identity = 150/306 (49.02%), Postives = 171/306 (55.88%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQS +GRALR FTLSTGKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERI
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIA VRWIEGV   RQRK KTIEEFA PRKILE TT TI  LFSFSS    +
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTC--AKDVFFSAFSSQ 184
            Q + A  S G    +  + +    P            G  +   C   K        + 
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 185 KTKGETASLSFGSSLGFPRIAVAGA----KPAFFAPRMREKVRGKNTFSLCEVRKWRTHS 244
           + K   A+LS+ S      + + GA    +    A +     R    ++LC  R     S
Sbjct: 181 RIK-RKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRP----S 240

Query: 245 ILWAHRMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAK-PIGEGPKDGACK 301
            L A R   KA L   + R                      GSLPAK PIGEGPKDGA K
Sbjct: 241 YLHASRSFYKALLPVEASR---------------------FGSLPAKPPIGEGPKDGAYK 280

[Close]

BLAST of CmaCh16G012610 vs. Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=3 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-48
Identity = 150/306 (49.02%), Postives = 171/306 (55.88%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQS +GRALR FTLSTGKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERI
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIA VRWIEGV   RQRK KTIEEFA PRKILE TT TI  LFSFSS    +
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTC--AKDVFFSAFSSQ 184
            Q + A  S G    +  + +    P            G  +   C   K        + 
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 185 KTKGETASLSFGSSLGFPRIAVAGA----KPAFFAPRMREKVRGKNTFSLCEVRKWRTHS 244
           + K   A+LS+ S      + + GA    +    A +     R    ++LC  R     S
Sbjct: 181 RIK-RKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRP----S 240

Query: 245 ILWAHRMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAK-PIGEGPKDGACK 301
            L A R   KA L   + R                      GSLPAK PIGEGPKDGA K
Sbjct: 241 YLHASRSFYKALLPVEASR---------------------FGSLPAKPPIGEGPKDGAYK 280

[Close]

BLAST of CmaCh16G012610 vs. Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-48
Identity = 150/306 (49.02%), Postives = 171/306 (55.88%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQS +GRALR FTLSTGKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERI
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIA VRWIEGV   RQRK KTIEEFA PRKILE TT TI  LFSFSS    +
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTC--AKDVFFSAFSSQ 184
            Q + A  S G    +  + +    P            G  +   C   K        + 
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 185 KTKGETASLSFGSSLGFPRIAVAGA----KPAFFAPRMREKVRGKNTFSLCEVRKWRTHS 244
           + K   A+LS+ S      + + GA    +    A +     R    ++LC  R     S
Sbjct: 181 RIK-RKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRP----S 240

Query: 245 ILWAHRMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAK-PIGEGPKDGACK 301
            L A R   KA L   + R                      GSLPAK PIGEGPKDGA K
Sbjct: 241 YLHASRSFYKALLPVEASR---------------------FGSLPAKPPIGEGPKDGAYK 280

[Close]

BLAST of CmaCh16G012610 vs. Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 5.2e-34
Identity = 109/238 (45.80%), Postives = 130/238 (54.62%), Query Frame = 1


Query: 10  EGRALRQFTLSTGK-SAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDP 69
           +G+AL+Q T    + SAGRNSSGRITVFHRGGGSKRLQR+ID KRSTSSMGIVERIEYDP
Sbjct: 7   KGKALKQLTFHLKRNSAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDP 66

Query: 70  NRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVAC 129
           NRSS IA VRWIEGV +   +     A  R+  E        LFSFSS P          
Sbjct: 67  NRSSWIALVRWIEGVLRPGKRLAFSKANSRR--EKNMFFFGLLFSFSSLP---------- 126

Query: 130 FSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASL 189
               R A  +       + PC +     +S   G++   AK+V                 
Sbjct: 127 ----RQAQRIKYEKTRALRPCEQ--ILESSWVLGTRDLRAKEVSLG-------------- 186

Query: 190 SFGSSLGFPRIAVAGAKPAFFAPRMR-----------EKVRGKNTFSLCEVRKWRTHS 236
             GS LG P IAVAGAKPAFFA RM+             +RG+NTFS  E ++W+T S
Sbjct: 187 PLGSFLGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQS 212

[Close]

BLAST of CmaCh16G012610 vs. TrEMBL
Match: D5I3E9_CUCPE (Ribosomal protein L2 OS=Cucurbita pepo GN=rpl2 PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 3.4e-157
Identity = 287/296 (96.96%), Postives = 290/296 (97.97%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 124
           EYDPNRSSRIA VRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSS PGKVDQR
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQR 120

Query: 125 KVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGE 184
           KVACFSPG+MAAYVVVGLPTR+PPCSKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGE
Sbjct: 121 KVACFSPGQMAAYVVVGLPTRIPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 185 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 244
           TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR
Sbjct: 181 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 240

Query: 245 KAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           KAALDW+SFRRQETDGLVGGAEHNESKPETD  SLPAKPIGEGPKDGACKVNRAPV
Sbjct: 241 KAALDWQSFRRQETDGLVGGAEHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh16G012610 vs. TrEMBL
Match: D5I399_CITLA (Ribosomal protein L2 OS=Citrullus lanatus GN=rpl2 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 4.9e-156
Identity = 285/296 (96.28%), Postives = 289/296 (97.64%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 124
           EYDPNRSSRIA VRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 120

Query: 125 KVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGE 184
           KVACFSPGRMAAYVVVGLPTRMPP SKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGE
Sbjct: 121 KVACFSPGRMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 185 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 244
           TASLSFGSS GFPR+AVAGAKPAFFAPRMR+K+RGKNTFSLCEVRKWRTHSILWAHR+KR
Sbjct: 181 TASLSFGSSFGFPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKR 240

Query: 245 KAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           KAAL WRSFRRQET GLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 241 KAALSWRSFRRQETLGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh16G012610 vs. TrEMBL
Match: G3EIZ1_CUCSA (Ribosomal protein L2 OS=Cucumis sativus GN=rpl2 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 1.2e-146
Identity = 274/300 (91.33%), Postives = 278/300 (92.67%), Query Frame = 1


Query: 2   ISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIV 61
           IST RQSQEGRALRQFTLSTGKSAGRNSSGRITVFH GGGSKRLQRRIDLKRSTSSMGIV
Sbjct: 4   ISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHLGGGSKRLQRRIDLKRSTSSMGIV 63

Query: 62  ERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 121
           ERIEYDPNRSSRI PVRWIEGVRQRKCKT EEFAP  +ILEPTTTTIRGLFSFSSPPGKV
Sbjct: 64  ERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPKPQILEPTTTTIRGLFSFSSPPGKV 123

Query: 122 DQRKVACFSPGRMAAYVVVGLPT-RMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQK 181
           DQRKVA FSPGRMAAYVVVGLPT RMPP S+SP T T KGAGSKKTCAKD+FFSAFSSQK
Sbjct: 124 DQRKVASFSPGRMAAYVVVGLPTTRMPPWSRSPDTSTRKGAGSKKTCAKDLFFSAFSSQK 183

Query: 182 TKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAH 241
           TKGETASLSFGSS  FPR+AVAGAKPAFFAPRMREKVRGK TFSLCEVRKWRTHSILWAH
Sbjct: 184 TKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAH 243

Query: 242 RMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           RMK KAAL WRSFRRQET GLVGGAEH ESK E DQGSLPAKPIGEGPKDGACKVNR PV
Sbjct: 244 RMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh16G012610 vs. TrEMBL
Match: G3EU27_CUCME (Ribosomal protein L2 OS=Cucumis melo subsp. melo GN=rpl2 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 4.6e-146
Identity = 274/300 (91.33%), Postives = 277/300 (92.33%), Query Frame = 1


Query: 2   ISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIV 61
           IST RQSQEGRALRQFTLSTGKSAGRNSSGRITVF  GGGSKRLQRRIDLKRSTSSMGIV
Sbjct: 4   ISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFRLGGGSKRLQRRIDLKRSTSSMGIV 63

Query: 62  ERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 121
           ERIEYDPNRSSRI PVRWIEGVRQRKCKT EEFAP  +ILEPTTTTIRGLFSFSSPPGKV
Sbjct: 64  ERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKV 123

Query: 122 DQRKVACFSPGRMAAYVVVGLPT-RMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQK 181
           DQRKVA FSPGRMAAYVVVGLPT RMPP SKSP T T KGAGSKKTCAKD+FFSAFSSQK
Sbjct: 124 DQRKVASFSPGRMAAYVVVGLPTTRMPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQK 183

Query: 182 TKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAH 241
           TKGETASLSFGSS  FPR+AVAGAKPAFFAPRMREKVRGK TFSLCEVRKWRTHSILWAH
Sbjct: 184 TKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAH 243

Query: 242 RMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           RMK KAAL WRSFRRQET GLVGGAEH ESK E DQGSLPAKPIGEGPKDGACKVNR PV
Sbjct: 244 RMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh16G012610 vs. TrEMBL
Match: A5BK62_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029794 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 1.7e-145
Identity = 274/300 (91.33%), Postives = 281/300 (93.67%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVE I
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVEWI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIAPVRWIEGV   RQRKC TIEEFAPPRKILEPTTTTIRGLFSFSS PGKV
Sbjct: 61  EYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEEFAPPRKILEPTTTTIRGLFSFSSLPGKV 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKT 184
           DQRKVACFSPG MAAYVVVGLPTRMPP SKSPF  TSKGAGSKKTCAKDVFFSAFSS K 
Sbjct: 121 DQRKVACFSPGPMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSPKA 180

Query: 185 KGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHR 244
           KGET+SLSFGSS GFPRIAVAGAKPAFFAPRMREK+RGKNTFSLCEVRKWRTHSILWAHR
Sbjct: 181 KGETSSLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHR 240

Query: 245 MKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV 302
           +KRKAAL W+SFRRQET GLVG AEHNESKP+TDQG   +KPIGEGPKDGACKV+RAPVV
Sbjct: 241 IKRKAALSWQSFRRQETLGLVGAAEHNESKPKTDQG-FYSKPIGEGPKDGACKVDRAPVV 297

[Close]

BLAST of CmaCh16G012610 vs. TAIR10
Match: ATMG00560.1 (ATMG00560.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 445.3 bits (1144), Expect = 3.0e-125
Identity = 236/300 (78.67%), Postives = 252/300 (84.00%), Query Frame = 1


Query: 12  RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRS 71
           RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRS
Sbjct: 7   RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRS 66

Query: 72  SRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSP 131
           S+IAPVRWI+G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSP
Sbjct: 67  SQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSP 126

Query: 132 GRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFG 191
           G MAAYVVVGLPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F 
Sbjct: 127 GLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFA 186

Query: 192 SSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWR 251
           SS GFPRIAVAGAKPAFFAPRMR+KVRGK+TFSLCEV+K RTHSILWAHR+K KA L W+
Sbjct: 187 SSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQ 246

Query: 252 SFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVNRAPV 301
           SFRRQ+T GLVG A H +SKP+TDQG+LPAKPIGE             KDGACKV+RAPV
Sbjct: 247 SFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of CmaCh16G012610 vs. TAIR10
Match: AT2G07715.1 (AT2G07715.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 437.2 bits (1123), Expect = 8.3e-123
Identity = 232/296 (78.38%), Postives = 248/296 (83.78%), Query Frame = 1


Query: 12  RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRS 71
           RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRS
Sbjct: 7   RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRS 66

Query: 72  SRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSP 131
           S+IAPVRWI+G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSP
Sbjct: 67  SQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSP 126

Query: 132 GRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFG 191
           G MAAYVVVGLPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F 
Sbjct: 127 GLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSLKAKRETASLAFA 186

Query: 192 SSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWR 251
           SS GFPRIAVAGAKPAFFAPRMR+KVRGK+TFSLCEV+K RTHSILWAHR+K KA L W+
Sbjct: 187 SSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQ 246

Query: 252 SFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVN 297
           SFRRQ+T GLVG A H +SKP+TDQG+LPAKPIGE             KDGACKV+
Sbjct: 247 SFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVD 302

[Close]

BLAST of CmaCh16G012610 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 55.1 bits (131), Expect = 8.8e-08
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 26  GRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSM-GIVERIEYDPNRSSRIAPVRWIEGVR 85
           GRN+ G IT  HRGGG KRL R+ID +R+   + G +  IEYDPNR++ I  + + +G +
Sbjct: 40  GRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]

BLAST of CmaCh16G012610 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 55.1 bits (131), Expect = 8.8e-08
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 26  GRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSM-GIVERIEYDPNRSSRIAPVRWIEGVR 85
           GRN+ G IT  HRGGG KRL R+ID +R+   + G +  IEYDPNR++ I  + + +G +
Sbjct: 40  GRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]

BLAST of CmaCh16G012610 vs. NCBI nr
Match: gi|295311698|ref|YP_003587363.1| (ribosomal protein L2 [Cucurbita pepo])

HSP 1 Score: 562.4 bits (1448), Expect = 4.8e-157
Identity = 287/296 (96.96%), Postives = 290/296 (97.97%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 124
           EYDPNRSSRIA VRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSS PGKVDQR
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQR 120

Query: 125 KVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGE 184
           KVACFSPG+MAAYVVVGLPTR+PPCSKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGE
Sbjct: 121 KVACFSPGQMAAYVVVGLPTRIPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 185 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 244
           TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR
Sbjct: 181 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 240

Query: 245 KAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           KAALDW+SFRRQETDGLVGGAEHNESKPETD  SLPAKPIGEGPKDGACKVNRAPV
Sbjct: 241 KAALDWQSFRRQETDGLVGGAEHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh16G012610 vs. NCBI nr
Match: gi|295311655|ref|YP_003587229.1| (ribosomal protein L2 [Citrullus lanatus])

HSP 1 Score: 558.5 bits (1438), Expect = 7.0e-156
Identity = 285/296 (96.28%), Postives = 289/296 (97.64%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 65  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 124
           EYDPNRSSRIA VRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 120

Query: 125 KVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKTKGE 184
           KVACFSPGRMAAYVVVGLPTRMPP SKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGE
Sbjct: 121 KVACFSPGRMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 185 TASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKR 244
           TASLSFGSS GFPR+AVAGAKPAFFAPRMR+K+RGKNTFSLCEVRKWRTHSILWAHR+KR
Sbjct: 181 TASLSFGSSFGFPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKR 240

Query: 245 KAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           KAAL WRSFRRQET GLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 241 KAALSWRSFRRQETLGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh16G012610 vs. NCBI nr
Match: gi|346683377|ref|YP_004849339.1| (ribosomal protein L2 [Cucumis sativus])

HSP 1 Score: 527.3 bits (1357), Expect = 1.7e-146
Identity = 274/300 (91.33%), Postives = 278/300 (92.67%), Query Frame = 1


Query: 2   ISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIV 61
           IST RQSQEGRALRQFTLSTGKSAGRNSSGRITVFH GGGSKRLQRRIDLKRSTSSMGIV
Sbjct: 4   ISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHLGGGSKRLQRRIDLKRSTSSMGIV 63

Query: 62  ERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 121
           ERIEYDPNRSSRI PVRWIEGVRQRKCKT EEFAP  +ILEPTTTTIRGLFSFSSPPGKV
Sbjct: 64  ERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPKPQILEPTTTTIRGLFSFSSPPGKV 123

Query: 122 DQRKVACFSPGRMAAYVVVGLPT-RMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQK 181
           DQRKVA FSPGRMAAYVVVGLPT RMPP S+SP T T KGAGSKKTCAKD+FFSAFSSQK
Sbjct: 124 DQRKVASFSPGRMAAYVVVGLPTTRMPPWSRSPDTSTRKGAGSKKTCAKDLFFSAFSSQK 183

Query: 182 TKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAH 241
           TKGETASLSFGSS  FPR+AVAGAKPAFFAPRMREKVRGK TFSLCEVRKWRTHSILWAH
Sbjct: 184 TKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAH 243

Query: 242 RMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           RMK KAAL WRSFRRQET GLVGGAEH ESK E DQGSLPAKPIGEGPKDGACKVNR PV
Sbjct: 244 RMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh16G012610 vs. NCBI nr
Match: gi|345034425|gb|AEN56111.1| (ribosomal protein L2 [Cucumis melo subsp. melo])

HSP 1 Score: 525.4 bits (1352), Expect = 6.5e-146
Identity = 274/300 (91.33%), Postives = 277/300 (92.33%), Query Frame = 1


Query: 2   ISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIV 61
           IST RQSQEGRALRQFTLSTGKSAGRNSSGRITVF  GGGSKRLQRRIDLKRSTSSMGIV
Sbjct: 4   ISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFRLGGGSKRLQRRIDLKRSTSSMGIV 63

Query: 62  ERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 121
           ERIEYDPNRSSRI PVRWIEGVRQRKCKT EEFAP  +ILEPTTTTIRGLFSFSSPPGKV
Sbjct: 64  ERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKV 123

Query: 122 DQRKVACFSPGRMAAYVVVGLPT-RMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQK 181
           DQRKVA FSPGRMAAYVVVGLPT RMPP SKSP T T KGAGSKKTCAKD+FFSAFSSQK
Sbjct: 124 DQRKVASFSPGRMAAYVVVGLPTTRMPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQK 183

Query: 182 TKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAH 241
           TKGETASLSFGSS  FPR+AVAGAKPAFFAPRMREKVRGK TFSLCEVRKWRTHSILWAH
Sbjct: 184 TKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAH 243

Query: 242 RMKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 301
           RMK KAAL WRSFRRQET GLVGGAEH ESK E DQGSLPAKPIGEGPKDGACKVNR PV
Sbjct: 244 RMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh16G012610 vs. NCBI nr
Match: gi|147791171|emb|CAN61455.1| (hypothetical protein VITISV_029794 [Vitis vinifera])

HSP 1 Score: 523.5 bits (1347), Expect = 2.5e-145
Identity = 274/300 (91.33%), Postives = 281/300 (93.67%), Query Frame = 1


Query: 5   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 64
           MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVE I
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVEWI 60

Query: 65  EYDPNRSSRIAPVRWIEGV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKV 124
           EYDPNRSSRIAPVRWIEGV   RQRKC TIEEFAPPRKILEPTTTTIRGLFSFSS PGKV
Sbjct: 61  EYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEEFAPPRKILEPTTTTIRGLFSFSSLPGKV 120

Query: 125 DQRKVACFSPGRMAAYVVVGLPTRMPPCSKSPFTITSKGAGSKKTCAKDVFFSAFSSQKT 184
           DQRKVACFSPG MAAYVVVGLPTRMPP SKSPF  TSKGAGSKKTCAKDVFFSAFSS K 
Sbjct: 121 DQRKVACFSPGPMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSPKA 180

Query: 185 KGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHR 244
           KGET+SLSFGSS GFPRIAVAGAKPAFFAPRMREK+RGKNTFSLCEVRKWRTHSILWAHR
Sbjct: 181 KGETSSLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHR 240

Query: 245 MKRKAALDWRSFRRQETDGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV 302
           +KRKAAL W+SFRRQET GLVG AEHNESKP+TDQG   +KPIGEGPKDGACKV+RAPVV
Sbjct: 241 IKRKAALSWQSFRRQETLGLVGAAEHNESKPKTDQG-FYSKPIGEGPKDGACKVDRAPVV 297

The following BLAST results are available for this feature:

BLAST of CmaCh16G012610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM02_ARATH	5.4e-124	78.67	60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=...	[more]
RM02_ORYSJ	2.2e-48	49.02	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 ...	[more]
RM02_ORYSI	2.2e-48	49.02	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE...	[more]
RM02_ORYSA	2.2e-48	49.02	60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1	[more]
RM02_MARPO	5.2e-34	45.80	60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV...	[more]

BLAST of CmaCh16G012610 vs. TrEMBL


Match Name	E-value	Identity	Description
D5I3E9_CUCPE	3.4e-157	96.96	Ribosomal protein L2 OS=Cucurbita pepo GN=rpl2 PE=4 SV=1	[more]
D5I399_CITLA	4.9e-156	96.28	Ribosomal protein L2 OS=Citrullus lanatus GN=rpl2 PE=4 SV=1	[more]
G3EIZ1_CUCSA	1.2e-146	91.33	Ribosomal protein L2 OS=Cucumis sativus GN=rpl2 PE=4 SV=1	[more]
G3EU27_CUCME	4.6e-146	91.33	Ribosomal protein L2 OS=Cucumis melo subsp. melo GN=rpl2 PE=4 SV=1	[more]
A5BK62_VITVI	1.7e-145	91.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029794 PE=4 SV=1	[more]

BLAST of CmaCh16G012610 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00560.1	3.0e-125	78.67	ATMG00560.1 Nucleic acid-binding, OB-fold-like protein	[more]
AT2G07715.1	8.3e-123	78.38	Nucleic acid-binding, OB-fold-like protein	[more]
ATCG00830.1	8.8e-08	45.90	ATCG00830.1 ribosomal protein L2	[more]
ATCG01310.1	8.8e-08	45.90	ATCG01310.1 ribosomal protein L2	[more]

BLAST of CmaCh16G012610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|295311698\|ref\|YP_003587363.1\|	4.8e-157	96.96	ribosomal protein L2 [Cucurbita pepo]	[more]
gi\|295311655\|ref\|YP_003587229.1\|	7.0e-156	96.28	ribosomal protein L2 [Citrullus lanatus]	[more]
gi\|346683377\|ref\|YP_004849339.1\|	1.7e-146	91.33	ribosomal protein L2 [Cucumis sativus]	[more]
gi\|345034425\|gb\|AEN56111.1\|	6.5e-146	91.33	ribosomal protein L2 [Cucumis melo subsp. melo]	[more]
gi\|147791171\|emb\|CAN61455.1\|	2.5e-145	91.33	hypothetical protein VITISV_029794 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002171	Ribosomal_L2
IPR012340	NA-bd_OB-fold
IPR022666	Rbsml_prot_L2_RNA-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012610.1	CmaCh16G012610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 12..87 score: 8.6
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 26..102 score: 1.1
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 5..82 score: 8.5
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 9..83 score: 9.25
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 26..78 score: 6.6
None	No IPR available	PANTHER	PTHR13691:SF20	60S RIBOSOMAL PROTEIN L2-RELATED	coord: 12..87 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G012610	Cucumber (Gy14) v1	cgycmaB0887
CmaCh16G012610	Cucurbita moschata (Rifu)	cmacmoB323
CmaCh16G012610	Cucurbita moschata (Rifu)	cmacmoB342
CmaCh16G012610	Wild cucumber (PI 183967)	cmacpiB332
CmaCh16G012610	Cucumber (Chinese Long) v2	cmacuB326
CmaCh16G012610	Melon (DHL92) v3.5.1	cmameB291
CmaCh16G012610	Watermelon (Charleston Gray)	cmawcgB284
CmaCh16G012610	Watermelon (97103) v1	cmawmB292
CmaCh16G012610	Cucurbita pepo (Zucchini)	cmacpeB345
CmaCh16G012610	Cucurbita pepo (Zucchini)	cmacpeB355
CmaCh16G012610	Cucurbita pepo (Zucchini)	cmacpeB357
CmaCh16G012610	Cucurbita pepo (Zucchini)	cmacpeB366
CmaCh16G012610	Bottle gourd (USVL1VR-Ls)	cmalsiB306
CmaCh16G012610	Bottle gourd (USVL1VR-Ls)	cmalsiB324
CmaCh16G012610	Cucumber (Gy14) v2	cgybcmaB339
CmaCh16G012610	Melon (DHL92) v3.6.1	cmamedB342
CmaCh16G012610	Melon (DHL92) v3.6.1	cmamedB362
CmaCh16G012610	Silver-seed gourd	carcmaB0205
CmaCh16G012610	Silver-seed gourd	carcmaB0560
CmaCh16G012610	Silver-seed gourd	carcmaB0596
CmaCh16G012610	Cucumber (Chinese Long) v3	cmacucB0380
CmaCh16G012610	Cucumber (Chinese Long) v3	cmacucB0412
CmaCh16G012610	Watermelon (97103) v2	cmawmbB328
CmaCh16G012610	Watermelon (97103) v2	cmawmbB337
CmaCh16G012610	Wax gourd	cmawgoB0447
CmaCh16G012610	Wax gourd	cmawgoB0422
CmaCh16G012610	Cucurbita maxima (Rimu)	cmacmaB355