CmaCh16G008210.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G008210.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Sesquiterpene synthase
Location	Cma_Chr16 : 4572537 .. 4572950 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACCAAAGTAATCACCATTTCTTCAATTTTAGATGATATATATAATGCTTATGGAAGAACTCCAAGTCCTCCCTCCCGCTATTCAAAGGGTCACTTAAATTCATTCAAATTGATGAAGATTTTAGCTTTAAAAGTTTGGCTTACTTAGTACTAACTTTTTTTTTCATCGTACTACACACTGTTTAAAAACCCCATATAAATTTTTTATATGGGAATAATCCATATTTAAAATAAAGTTGAAGATTTTATTAACAATGATGTCATTAAATTTTCAAGAAGAAGCAGAATCAATGTACTCCATGAGTACGTGAAACCTTTTTCTATAGCAAAGTTAGATCTTTATAAGGAAATTAGTAAAGAGATAGACAAGAATGAAAGTTCACTCACCAGAAGGAGAGGTACACGGTAA

mRNA sequence

ATGTTAACCAAAGTAATCACCATTTCTTCAATTTTAGATGATATATATAATGCTTATGGAAGAACTCCAAGTCCTCCCTCCCGCTATTCAAAGGATTTTATTAACAATGATGTCATTAAATTTTCAAGAAGAAGCAGAATCAATGTACTCCATGAGTACGTGAAACCTTTTTCTATAGCAAAGTTAGATCTTTATAAGGAAATTAGTAAAGAGATAGACAAGAATGAAAGTTCACTCACCAGAAGGAGAGGTACACGGTAA

Coding sequence (CDS)

ATGTTAACCAAAGTAATCACCATTTCTTCAATTTTAGATGATATATATAATGCTTATGGAAGAACTCCAAGTCCTCCCTCCCGCTATTCAAAGGATTTTATTAACAATGATGTCATTAAATTTTCAAGAAGAAGCAGAATCAATGTACTCCATGAGTACGTGAAACCTTTTTCTATAGCAAAGTTAGATCTTTATAAGGAAATTAGTAAAGAGATAGACAAGAATGAAAGTTCACTCACCAGAAGGAGAGGTACACGGTAA

Protein sequence

MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIAKLDLYKEISKEIDKNESSLTRRRGTR

Homology

[Close]

BLAST of CmaCh16G008210.1 vs. Swiss-Prot
Match: GCSY1_CUCME ((+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           MLTKVI I+SILDDIY+AYG        + +  +    I+   RS ++ L  Y+KPF +A
Sbjct: 311 MLTKVIAIASILDDIYDAYGT-------FEELQVLTPAIQRWDRSMVHTLPLYMKPFYVA 370

Query: 61  KLDLYKEISKEIDKNESSL 80
            L+LY+EI KEIDK+++SL
Sbjct: 371 MLELYEEIGKEIDKDQNSL 382

[Close]

BLAST of CmaCh16G008210.1 vs. Swiss-Prot
Match: TPSVS_VITVI (Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.0e-06
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           +LTKVI ++SILDDI++AYG TP     + +     D+      + IN L EY+K   +A
Sbjct: 298 ILTKVIAMTSILDDIHDAYG-TPEELKLFIEAIERWDI------NSINQLPEYMKLCYVA 357

Query: 61  KLDLYKEISKEIDK 75
            LD+YKEI +E++K
Sbjct: 358 LLDVYKEIEEEMEK 364

[Close]

BLAST of CmaCh16G008210.1 vs. TrEMBL
Match: A0A0A0L2I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G097540 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           MLTKVI ISSILDDIY+AYG        + +  +    I+   RS ++ L EY+KPF +A
Sbjct: 298 MLTKVIAISSILDDIYDAYGT-------FEELQVLAPAIQRWDRSMVHTLPEYMKPFYVA 357

Query: 61  KLDLYKEISKEIDKNESSL 80
             ++Y+EISKEI K+++SL
Sbjct: 358 MFEVYEEISKEIGKDQNSL 369

[Close]

BLAST of CmaCh16G008210.1 vs. NCBI nr
Match: gi|661902982|ref|NP_001284382.1| ((+)-gamma-cadinene synthase [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           MLTKVI I+SILDDIY+AYG        + +  +    I+   RS ++ L  Y+KPF +A
Sbjct: 311 MLTKVIAIASILDDIYDAYGT-------FEELQVLTPAIQRWDRSMVHTLPLYMKPFYVA 370

Query: 61  KLDLYKEISKEIDKNESSL 80
            L+LY+EI KEIDK+++SL
Sbjct: 371 MLELYEEIGKEIDKDQNSL 382

[Close]

BLAST of CmaCh16G008210.1 vs. NCBI nr
Match: gi|778676208|ref|XP_011650545.1| (PREDICTED: (+)-gamma-cadinene synthase [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-08
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           MLTKVI ISSILDDIY+AYG        + +  +    I+   RS ++ L EY+KPF +A
Sbjct: 298 MLTKVIAISSILDDIYDAYGT-------FEELQVLAPAIQRWDRSMVHTLPEYMKPFYVA 357

Query: 61  KLDLYKEISKEIDKNESSL 80
             ++Y+EISKEI K+++SL
Sbjct: 358 MFEVYEEISKEIGKDQNSL 369

The following BLAST results are available for this feature:

BLAST of CmaCh16G008210.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GCSY1_CUCME	1.1e-10	48.10	(+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1	[more]
TPSVS_VITVI	5.0e-06	43.24	Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1	[more]

BLAST of CmaCh16G008210.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2I8_CUCSA	1.7e-08	48.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G097540 PE=3 SV=1	[more]

BLAST of CmaCh16G008210.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G008210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661902982\|ref\|NP_001284382.1\|	1.8e-08	48.10	(+)-gamma-cadinene synthase [Cucumis melo]	[more]
gi\|778676208\|ref\|XP_011650545.1\|	2.4e-08	48.10	PREDICTED: (+)-gamma-cadinene synthase [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005630	Terpene_synthase_metal-bd
IPR008949	Isoprenoid_synthase_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0000287	magnesium ion binding
GO:0010333	terpene synthase activity
GO:0016829	lyase activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045338	farnesyl diphosphate metabolic process
biological_process	GO:0051762	sesquiterpene biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010333	terpene synthase activity
molecular_function	GO:0010334	sesquiterpene synthase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh16G008210	CmaCh16G008210	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh16G008210.1	CmaCh16G008210.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G008210.1.exon.1	CmaCh16G008210.1.exon.1	exon
CmaCh16G008210.1.exon.2	CmaCh16G008210.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G008210.1.CDS.1	CmaCh16G008210.1.CDS.1	CDS
CmaCh16G008210.1.CDS.2	CmaCh16G008210.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 1..78 score: 3.
IPR008949	Isoprenoid synthase domain	GENE3D	G3DSA:1.10.600.10		coord: 1..76 score: 1.
IPR008949	Isoprenoid synthase domain	unknown	SSF48576	Terpenoid synthases	coord: 1..81 score: 4.8