CmaCh16G008210 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G008210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Sesquiterpene synthase
Location	Cma_Chr16 : 4572537 .. 4572950 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACCAAAGTAATCACCATTTCTTCAATTTTAGATGATATATATAATGCTTATGGAAGAACTCCAAGTCCTCCCTCCCGCTATTCAAAGGGTCACTTAAATTCATTCAAATTGATGAAGATTTTAGCTTTAAAAGTTTGGCTTACTTAGTACTAACTTTTTTTTTCATCGTACTACACACTGTTTAAAAACCCCATATAAATTTTTTATATGGGAATAATCCATATTTAAAATAAAGTTGAAGATTTTATTAACAATGATGTCATTAAATTTTCAAGAAGAAGCAGAATCAATGTACTCCATGAGTACGTGAAACCTTTTTCTATAGCAAAGTTAGATCTTTATAAGGAAATTAGTAAAGAGATAGACAAGAATGAAAGTTCACTCACCAGAAGGAGAGGTACACGGTAA

mRNA sequence

ATGTTAACCAAAGTAATCACCATTTCTTCAATTTTAGATGATATATATAATGCTTATGGAAGAACTCCAAGTCCTCCCTCCCGCTATTCAAAGGATTTTATTAACAATGATGTCATTAAATTTTCAAGAAGAAGCAGAATCAATGTACTCCATGAGTACGTGAAACCTTTTTCTATAGCAAAGTTAGATCTTTATAAGGAAATTAGTAAAGAGATAGACAAGAATGAAAGTTCACTCACCAGAAGGAGAGGTACACGGTAA

Coding sequence (CDS)

ATGTTAACCAAAGTAATCACCATTTCTTCAATTTTAGATGATATATATAATGCTTATGGAAGAACTCCAAGTCCTCCCTCCCGCTATTCAAAGGATTTTATTAACAATGATGTCATTAAATTTTCAAGAAGAAGCAGAATCAATGTACTCCATGAGTACGTGAAACCTTTTTCTATAGCAAAGTTAGATCTTTATAAGGAAATTAGTAAAGAGATAGACAAGAATGAAAGTTCACTCACCAGAAGGAGAGGTACACGGTAA

Protein sequence

MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIAKLDLYKEISKEIDKNESSLTRRRGTR

Homology

[Close]

BLAST of CmaCh16G008210 vs. Swiss-Prot
Match: GCSY1_CUCME ((+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           MLTKVI I+SILDDIY+AYG        + +  +    I+   RS ++ L  Y+KPF +A
Sbjct: 311 MLTKVIAIASILDDIYDAYGT-------FEELQVLTPAIQRWDRSMVHTLPLYMKPFYVA 370

Query: 61  KLDLYKEISKEIDKNESSL 80
            L+LY+EI KEIDK+++SL
Sbjct: 371 MLELYEEIGKEIDKDQNSL 382

[Close]

BLAST of CmaCh16G008210 vs. Swiss-Prot
Match: TPSVS_VITVI (Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.0e-06
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           +LTKVI ++SILDDI++AYG TP     + +     D+      + IN L EY+K   +A
Sbjct: 298 ILTKVIAMTSILDDIHDAYG-TPEELKLFIEAIERWDI------NSINQLPEYMKLCYVA 357

Query: 61  KLDLYKEISKEIDK 75
            LD+YKEI +E++K
Sbjct: 358 LLDVYKEIEEEMEK 364

[Close]

BLAST of CmaCh16G008210 vs. TrEMBL
Match: A0A0A0L2I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G097540 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           MLTKVI ISSILDDIY+AYG        + +  +    I+   RS ++ L EY+KPF +A
Sbjct: 298 MLTKVIAISSILDDIYDAYGT-------FEELQVLAPAIQRWDRSMVHTLPEYMKPFYVA 357

Query: 61  KLDLYKEISKEIDKNESSL 80
             ++Y+EISKEI K+++SL
Sbjct: 358 MFEVYEEISKEIGKDQNSL 369

[Close]

BLAST of CmaCh16G008210 vs. NCBI nr
Match: gi|661902982|ref|NP_001284382.1| ((+)-gamma-cadinene synthase [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           MLTKVI I+SILDDIY+AYG        + +  +    I+   RS ++ L  Y+KPF +A
Sbjct: 311 MLTKVIAIASILDDIYDAYGT-------FEELQVLTPAIQRWDRSMVHTLPLYMKPFYVA 370

Query: 61  KLDLYKEISKEIDKNESSL 80
            L+LY+EI KEIDK+++SL
Sbjct: 371 MLELYEEIGKEIDKDQNSL 382

[Close]

BLAST of CmaCh16G008210 vs. NCBI nr
Match: gi|778676208|ref|XP_011650545.1| (PREDICTED: (+)-gamma-cadinene synthase [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-08
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MLTKVITISSILDDIYNAYGRTPSPPSRYSKDFINNDVIKFSRRSRINVLHEYVKPFSIA 60
           MLTKVI ISSILDDIY+AYG        + +  +    I+   RS ++ L EY+KPF +A
Sbjct: 298 MLTKVIAISSILDDIYDAYGT-------FEELQVLAPAIQRWDRSMVHTLPEYMKPFYVA 357

Query: 61  KLDLYKEISKEIDKNESSL 80
             ++Y+EISKEI K+++SL
Sbjct: 358 MFEVYEEISKEIGKDQNSL 369

The following BLAST results are available for this feature:

BLAST of CmaCh16G008210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GCSY1_CUCME	1.1e-10	48.10	(+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1	[more]
TPSVS_VITVI	5.0e-06	43.24	Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1	[more]

BLAST of CmaCh16G008210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2I8_CUCSA	1.7e-08	48.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G097540 PE=3 SV=1	[more]

BLAST of CmaCh16G008210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G008210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661902982\|ref\|NP_001284382.1\|	1.8e-08	48.10	(+)-gamma-cadinene synthase [Cucumis melo]	[more]
gi\|778676208\|ref\|XP_011650545.1\|	2.4e-08	48.10	PREDICTED: (+)-gamma-cadinene synthase [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005630	Terpene_synthase_metal-bd
IPR008949	Isoprenoid_synthase_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0000287	magnesium ion binding
GO:0010333	terpene synthase activity
GO:0016829	lyase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045338	farnesyl diphosphate metabolic process
biological_process	GO:0051762	sesquiterpene biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010334	sesquiterpene synthase activity
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0010333	terpene synthase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G008210.1	CmaCh16G008210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 1..78 score: 3.
IPR008949	Isoprenoid synthase domain	GENE3D	G3DSA:1.10.600.10		coord: 1..76 score: 1.
IPR008949	Isoprenoid synthase domain	unknown	SSF48576	Terpenoid synthases	coord: 1..81 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G008210	CsaV3_3G005780	Cucumber (Chinese Long) v3	cmacucB0382

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G008210	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G008210	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G008210	Cucurbita pepo (Zucchini)	cmacpeB356
CmaCh16G008210	Cucurbita pepo (Zucchini)	cmacpeB362
CmaCh16G008210	Bottle gourd (USVL1VR-Ls)	cmalsiB315
CmaCh16G008210	Cucumber (Gy14) v2	cgybcmaB084
CmaCh16G008210	Cucumber (Gy14) v2	cgybcmaB341
CmaCh16G008210	Melon (DHL92) v3.6.1	cmamedB330
CmaCh16G008210	Melon (DHL92) v3.6.1	cmamedB345
CmaCh16G008210	Silver-seed gourd	carcmaB0946
CmaCh16G008210	Silver-seed gourd	carcmaB1243
CmaCh16G008210	Cucumber (Chinese Long) v3	cmacucB0371
CmaCh16G008210	Watermelon (97103) v2	cmawmbB336
CmaCh16G008210	Watermelon (97103) v2	cmawmbB343
CmaCh16G008210	Wax gourd	cmawgoB0417
CmaCh16G008210	Wax gourd	cmawgoB0421
CmaCh16G008210	Cucurbita maxima (Rimu)	cmacmaB041
CmaCh16G008210	Cucurbita maxima (Rimu)	cmacmaB339
CmaCh16G008210	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh16G008210	Cucumber (Gy14) v1	cgycmaB0121
CmaCh16G008210	Cucumber (Gy14) v1	cgycmaB0337
CmaCh16G008210	Cucurbita moschata (Rifu)	cmacmoB317
CmaCh16G008210	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G008210	Cucurbita moschata (Rifu)	cmacmoB324
CmaCh16G008210	Cucurbita moschata (Rifu)	cmacmoB328
CmaCh16G008210	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G008210	Wild cucumber (PI 183967)	cmacpiB324
CmaCh16G008210	Wild cucumber (PI 183967)	cmacpiB334
CmaCh16G008210	Cucumber (Chinese Long) v2	cmacuB318
CmaCh16G008210	Cucumber (Chinese Long) v2	cmacuB328
CmaCh16G008210	Melon (DHL92) v3.5.1	cmameB292
CmaCh16G008210	Watermelon (Charleston Gray)	cmawcgB283
CmaCh16G008210	Watermelon (Charleston Gray)	cmawcgB294
CmaCh16G008210	Watermelon (Charleston Gray)	cmawcgB298
CmaCh16G008210	Watermelon (97103) v1	cmawmB306