CmaCh16G007900.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G007900.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cma_Chr16 : 4340463 .. 4341579 (+)
Sequence length	1041

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTGTCAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCTAAAAGAGTTCCCTTTAAAATAGGGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGTACTTGGGATGGAGTTCCTCCTAGAACACAAAGTTATCCCAATGCCGCTGGCAAAGTGCTTAGTGATCACCGACCGCAACCCCACAGTAATACCTGCAAGCATCAAGCAACTAGGTAATCTTCGAATGATCTCGGCCATACAATTGAAAAGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAACGAGGTACTAAACGACTATGCTGACATAATGCCAGAGAGCTTACCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCGTCCCCGGAGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGGGATTCATCCGCCCGGAAAAGGCACCCTATGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGTATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGTCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTCGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTCCAGCTACTTTCTACACGTTGATGAACCAAGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATACCTCGACGACATAGTGGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTGCGACAAAACCAACTGTATGTCAAGAAAGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAGATTAGTATGGATAGCGATAAGATAA

mRNA sequence

ATGAAAGCTGTCAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCTAAAAGAGTTCCCTTTAAAATAGGGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGTACTTGGGATGGAGTTCCTCCTAGAACACAAAGTTATCCCAATGCCGCTGGCAAAGTGCTTAGTGATCACCGACCGCAACCCCACAGTAATACCTGCAAGCATCAAGCAACTAGGTAATCTTCGAATGATCTCGGCCATACAATTGAAAAGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAACGAGGTACTAAACGACTATGCTGACATAATGCCAGAGAGCTTACCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCGTCCCCGGAGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGGGATTCATCCGCCCGGAAAAGGCACCCTATGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGTATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGTCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTCGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTCCAGCTACTTTCTACACGTTGATGAACCAAGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATACCTCGACGACATAGTGGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTGCGACAAAACCAACTATTAGTATGGATAGCGATAAGATAA

Coding sequence (CDS)

ATGAAAGCTGTCAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCTAAAAGAGTTCCCTTTAAAATAGGGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGTACTTGGGATGGAGTTCCTCCTAGAACACAAAGTTATCCCAATGCCGCTGGCAAAGTGCTTAGTGATCACCGACCGCAACCCCACAGTAATACCTGCAAGCATCAAGCAACTAGGTAATCTTCGAATGATCTCGGCCATACAATTGAAAAGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAACGAGGTACTAAACGACTATGCTGACATAATGCCAGAGAGCTTACCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCGTCCCCGGAGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGGGATTCATCCGCCCGGAAAAGGCACCCTATGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGTATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGTCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTCGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTCCAGCTACTTTCTACACGTTGATGAACCAAGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATACCTCGACGACATAGTGGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTGCGACAAAACCAACTATTAGTATGGATAGCGATAAGATAA

Protein sequence

MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLVWIAIR

Homology

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BLAST of CmaCh16G007900.1 vs. Swiss-Prot
Match: RRPO_OENBE (RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.1e-47
Identity = 91/128 (71.09%), Postives = 107/128 (83.59%), Query Frame = 1


Query: 206 TLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKT 265
           +LR+CIDYRAL KVT++NKYP+P + DLFD+L    +FTKLDLRSGY+QVRIA+GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 266 TCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVV---YSTTLEE 325
           TCVTRYG+FEF VMPFGLTNA ATF  LMN V YEYLD FV+VYLDD+VV   YS +L E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 326 HKVHLKLV 331
           H  HL++V
Sbjct: 125 HIKHLRVV 132

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BLAST of CmaCh16G007900.1 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-41
Identity = 97/247 (39.27%), Postives = 136/247 (55.06%), Query Frame = 1


Query: 109 VTTTEETVPNEINEVLNDYADIMPESLPQT--------LPPRRG------IDHEIELVPG 168
           V+T +   PN  +    D    +P  L Q         LPPR        + H+IE+ PG
Sbjct: 560 VSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPG 619

Query: 169 VKPPAKNAYRMAPPELAELRKQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYR 228
            + P    Y +      E+ K + +LL   FI P K+P  +PV+   KKDGT RLC+DYR
Sbjct: 620 ARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYR 679

Query: 229 ALNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAF 288
            LNK T+ + +PLP I +L  ++   + FT LDL SGY+Q+ +   D  KT  VT  G +
Sbjct: 680 TLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKY 739

Query: 289 EFLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKL 342
           E+ VMPFGL NAP+TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++L
Sbjct: 740 EYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERL 799

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BLAST of CmaCh16G007900.1 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-41
Identity = 97/247 (39.27%), Postives = 136/247 (55.06%), Query Frame = 1


Query: 109 VTTTEETVPNEINEVLNDYADIMPESLPQT--------LPPRRG------IDHEIELVPG 168
           V+T +   PN  +    D    +P  L Q         LPPR        + H+IE+ PG
Sbjct: 534 VSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPG 593

Query: 169 VKPPAKNAYRMAPPELAELRKQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYR 228
            + P    Y +      E+ K + +LL   FI P K+P  +PV+   KKDGT RLC+DYR
Sbjct: 594 ARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYR 653

Query: 229 ALNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAF 288
            LNK T+ + +PLP I +L  ++   + FT LDL SGY+Q+ +   D  KT  VT  G +
Sbjct: 654 TLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKY 713

Query: 289 EFLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKL 342
           E+ VMPFGL NAP+TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++L
Sbjct: 714 EYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERL 773

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BLAST of CmaCh16G007900.1 vs. Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.6e-40
Identity = 85/225 (37.78%), Postives = 137/225 (60.89%), Query Frame = 1


Query: 119 EINEVLNDYADIMPESLPQTLP-PRRGIDHEIELVP-GVKPPAKNAYRMAPPELAELRKQ 178
           E+ ++  ++ DI  E+  + LP P +G++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 179 LDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQ 238
           +++ LK+G IR  KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 239 LHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQ 298
           + G   FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 299 VFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L++
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596

[Close]

BLAST of CmaCh16G007900.1 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.6e-40
Identity = 85/225 (37.78%), Postives = 137/225 (60.89%), Query Frame = 1


Query: 119 EINEVLNDYADIMPESLPQTLP-PRRGIDHEIELVP-GVKPPAKNAYRMAPPELAELRKQ 178
           E+ ++  ++ DI  E+  + LP P +G++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 179 LDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQ 238
           +++ LK+G IR  KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 239 LHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQ 298
           + G   FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 299 VFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L++
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596

[Close]

BLAST of CmaCh16G007900.1 vs. TrEMBL
Match: A5AZ16_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 1.3e-115
Identity = 213/344 (61.92%), Postives = 266/344 (77.33%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +KAVNS A P  GV++ V   IG W G +D  VA MD F +VLG++FL + K +P+P  +
Sbjct: 436 LKAVNSAAKPSHGVARGVTMHIGSWEGRVDFTVAPMDHFKMVLGIDFLQKVKAVPLPFLR 495

Query: 61  CLVITDRNPTVIPASIKQLGNLR--MISAIQLKRGLAREEPTFMAIPLMEVTT-TEETVP 120
            + I +   + +  ++ + G L+  M+S +Q+K+GL REE T++A    E    + E +P
Sbjct: 496 SMAILEEEKSCMVPTVTE-GTLKTPMLSTMQVKKGLKREEVTYLATLKEERDDGSGEPMP 555

Query: 121 NEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQL 180
            EI  VL+++ D+MP  LP+ LPPRR  DH+IEL PG KPPA   YRMAPPEL ELR+QL
Sbjct: 556 KEIEGVLDEFKDVMPPELPKRLPPRREEDHKIELEPGSKPPAMGPYRMAPPELEELRRQL 615

Query: 181 DELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQL 240
            ELL AGFI+P KAPYGAPVLFQKK DG+LR+CIDYRALNKVTV+NKYP+P+I+DLFDQL
Sbjct: 616 KELLDAGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIADLFDQL 675

Query: 241 HGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQV 300
              KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG++EFLVMPFGLTNAPATF TLMN++
Sbjct: 676 GRAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFCTLMNKI 735

Query: 301 FYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           F+ YLD+FV+VYLDDIV+YS TL+EH+ HL+ VF  LRQN+L V
Sbjct: 736 FHPYLDKFVVVYLDDIVIYSNTLKEHEEHLRKVFKILRQNELYV 778

[Close]

BLAST of CmaCh16G007900.1 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 3.1e-114
Identity = 209/343 (60.93%), Postives = 259/343 (75.51%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +KAVNS A P  GV++ V   IG W G +D  VA MDDF +VLGM+FL + K +P+P  +
Sbjct: 479 LKAVNSAAKPSHGVARGVSMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPFLR 538

Query: 61  CL-VITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTT-TEETVPN 120
            + ++ +  P ++P   +      M+SA+Q+K+GL REE T++A    E      E +P 
Sbjct: 539 SMAILEEEKPCMVPTVTEGTLKTPMLSAMQVKKGLKREEVTYLATLKEERDDGLREPMPK 598

Query: 121 EINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLD 180
           EI  VL+++ D+MP  LP+ LPPRR  DH+IEL PG KPPA   YRMAPPEL ELR+QL 
Sbjct: 599 EIEGVLDEFKDVMPPELPKRLPPRREEDHKIELEPGAKPPAMGPYRMAPPELEELRRQLK 658

Query: 181 ELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLH 240
           ELL  GFI+P KAPYGAPVLFQKK DG+LR+CIDYRALNKVTV+NKYP+P+I+DLFDQL 
Sbjct: 659 ELLDVGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIADLFDQLG 718

Query: 241 GVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVF 300
              YFTKLDLR GYYQVRI EGDE KTTCVTRYG++EFLVMPFGLTNAPATF TL+N++F
Sbjct: 719 RASYFTKLDLRLGYYQVRIVEGDESKTTCVTRYGSYEFLVMPFGLTNAPATFCTLVNKIF 778

Query: 301 YEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           + YLD+FV+VYLDDIV+YS TL+EH  HL+ VF  LRQN+L V
Sbjct: 779 HPYLDKFVVVYLDDIVIYSNTLKEHVKHLRKVFKILRQNELYV 821

[Close]

BLAST of CmaCh16G007900.1 vs. TrEMBL
Match: A5AN22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.2e-113
Identity = 210/344 (61.05%), Postives = 263/344 (76.45%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +KAVNS A P  GV++ V   IG W G ++  VA MDDF +VL M+FL + K +P+P  +
Sbjct: 365 LKAVNSTAKPSHGVARGVTMHIGSWKGRVNFTVAPMDDFKMVLRMDFLQKAKAVPLPFLR 424

Query: 61  CLVITDRNPTVIPASIKQLGNLR--MISAIQLKRGLAREEPTFMAIPLMEVTT-TEETVP 120
            + I +   + +  ++ + G L+  M+SA+Q+K+GL R++ T++A    E    + E +P
Sbjct: 425 LMAILEEEKSCMVHTVTE-GTLKTPMLSAMQVKKGLKRKKVTYLATLKEERDDGSGEPMP 484

Query: 121 NEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQL 180
            EI  VL+++ D+MP  LP+ LPPRR  DH+IEL P  KPPA   YRMAPPEL ELR+QL
Sbjct: 485 KEIKGVLDEFKDVMPPELPKRLPPRREEDHKIELEPETKPPAMGPYRMAPPELEELRRQL 544

Query: 181 DELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQL 240
            ELL AGFI+P K PYGAPVLFQKK DG+LR+CIDYRALNKVTV+NKYP+P+I DLFDQL
Sbjct: 545 KELLDAGFIQPSKVPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIVDLFDQL 604

Query: 241 HGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQV 300
              +YFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG++EFLVMPFGLTNAPATFYTLMN +
Sbjct: 605 GRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFYTLMNNI 664

Query: 301 FYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           F+ YLD+FV+VYLDDIV+YS TL+EH  HL+ VF  LRQN+L V
Sbjct: 665 FHPYLDKFVVVYLDDIVIYSNTLKEHVEHLRKVFKILRQNELYV 707

[Close]

BLAST of CmaCh16G007900.1 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 1.7e-112
Identity = 207/343 (60.35%), Postives = 261/343 (76.09%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +KAVNS A P  GV++ V   IG W G +D  VA MDDF +VLGM+FL + K +P+P  +
Sbjct: 474 LKAVNSAAKPSHGVARGVTMHIGLWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPFLR 533

Query: 61  CL-VITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTT-TEETVPN 120
            + ++ +  P ++P   +      M+SA+Q+K+GL REE T++A    E    + E +P 
Sbjct: 534 SMAILEEEKPCMVPTVTEGTPKTPMLSAMQVKKGLKREEVTYLATLKEEKDDGSGEPMPK 593

Query: 121 EINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLD 180
           EI  VL+++ D+M   LP+ L PRR  +H+I+L  G KP A   YRMAPPEL ELR+QL 
Sbjct: 594 EIKGVLDEFKDVMXPELPKRLXPRREEBHKIKLEXGAKPRAMGPYRMAPPELEELRRQLK 653

Query: 181 ELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLH 240
           ELL AGFI+P KAPYGAPVLFQKK DG+LR+CIDYRALNKVTV+NKYP+P+I+DLFDQL 
Sbjct: 654 ELLDAGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIADLFDQLG 713

Query: 241 GVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVF 300
             +YFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG++EFLVMPFGLTNAPATF TLMN++F
Sbjct: 714 RARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFCTLMNKIF 773

Query: 301 YEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           + YLD+FV+ YLDDIV+YS TL+EH+ HL+ VF  LRQN+L V
Sbjct: 774 HPYLDKFVVXYLDDIVIYSNTLKEHEEHLRKVFKILRQNKLYV 816

[Close]

BLAST of CmaCh16G007900.1 vs. TrEMBL
Match: A5AUJ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040632 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 2.1e-110
Identity = 205/347 (59.08%), Postives = 264/347 (76.08%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMP-LA 60
           +KAVNS+A  I GV+K VP KIGDW G   L+   +DDFD++LG++FLL  KV  +P L 
Sbjct: 408 IKAVNSKAQKIQGVAKNVPMKIGDWEGMCSLLCVPLDDFDLILGVDFLLRAKVALIPHLG 467

Query: 61  KCLVITDRNPTVIPASIKQ---LGNLRMISAIQLKRGLAREEPTFMA--IPLMEVTTTEE 120
             +V+ ++ P  + A   +    G   M+SAIQLK+GL R + T++A  I + E  T E 
Sbjct: 468 GLMVLEEKQPCFVQALRAKDGGKGQPEMLSAIQLKKGLKRGQETYVAALIEIKEGQTME- 527

Query: 121 TVPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELR 180
            VP+ + ++L +++D+MP  LP+ LPPRR IDH+IEL+PG K PA+  YRM+P EL ELR
Sbjct: 528 -VPDSVVKILKEFSDVMPAELPKELPPRRPIDHKIELLPGTKAPAQAPYRMSPAELLELR 587

Query: 181 KQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLF 240
           KQL ELL AG I+P +APYGAPVLFQKK DG+LR+C+DYRALNKVT++NKYP+P+ ++LF
Sbjct: 588 KQLKELLDAGLIQPSRAPYGAPVLFQKKHDGSLRMCVDYRALNKVTIKNKYPIPLAAELF 647

Query: 241 DQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLM 300
           D+L    YFTKLDLRSGY+QVR+A GDE KTTCV RYG++EFLVMPFGLTNAPATF  LM
Sbjct: 648 DRLSKASYFTKLDLRSGYWQVRVAAGDEGKTTCVXRYGSYEFLVMPFGLTNAPATFCNLM 707

Query: 301 NQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           N V ++YLD FV+VYLDDIVVYS TL EH+ HL+LVF +LR+N+L V
Sbjct: 708 NDVLFDYLDXFVVVYLDDIVVYSKTLTEHEKHLRLVFQRLRENRLYV 752

[Close]

BLAST of CmaCh16G007900.1 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 492.7 bits (1267), Expect = 5.4e-136
Identity = 243/306 (79.41%), Postives = 271/306 (88.56%), Query Frame = 1


Query: 36  MDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLA 95
           MDDFDVVLGMEFLLEH+VI MPLAKCLVIT   P+V+   ++Q   L+MISA+QLK+GL+
Sbjct: 1   MDDFDVVLGMEFLLEHQVILMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLKKGLS 60

Query: 96  REEPTFMAIPLMEVTTTEETVPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGV 155
           R+EPTFMAIPL     + ETVP EI  VL  Y D+MP+S P++LPPRR IDHEIELVPG 
Sbjct: 61  RDEPTFMAIPLNSSENSGETVPTEIVRVLEKYRDVMPDSFPKSLPPRRMIDHEIELVPGT 120

Query: 156 KPPAKNAYRMAPPELAELRKQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRA 215
           KP AKNAYRMAPPELAELRKQLDELL AGFIRP KAPYGAPVLFQKKKDG+LRLCIDYRA
Sbjct: 121 KPRAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRA 180

Query: 216 LNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFE 275
           LNK+TVRNKYPLPII+DLFD+LHG KYF+KLDLRSGYYQVRIAEGDEPKTTCVTRYGAFE
Sbjct: 181 LNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFE 240

Query: 276 FLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLR 335
           FLVMPFGLTNAPATF TLMNQVF+EYLD+FV+VYLDDIVVYS T+EEH+ HL+ VF KL+
Sbjct: 241 FLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSMTMEEHRDHLQKVFQKLK 300

Query: 336 QNQLLV 342
           +NQL V
Sbjct: 301 ENQLYV 306

[Close]

BLAST of CmaCh16G007900.1 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 480.7 bits (1236), Expect = 2.1e-132
Identity = 228/341 (66.86%), Postives = 281/341 (82.40%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           MKAVNS+ALP VG++K+VP K+G W   +DL+V  MDDFDV+LGM+FL++ K IP+P A 
Sbjct: 659 MKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKKKAIPIPAAN 718

Query: 61  CLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEI 120
            L++      VIP   KQL N +++SA+Q K+G+ R+EP+++A+ +      +ET P  +
Sbjct: 719 SLLMMGEQTGVIPVQRKQLNNPKLLSALQFKKGVRRKEPSYIALVVAREGEDDETTPPMV 778

Query: 121 NEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDEL 180
            + L  + D+MP++LP+ LPPRR IDH IEL+PG KPPAK  YRMAPPELAELRKQL EL
Sbjct: 779 LDALKSFNDVMPDNLPRNLPPRRDIDHNIELIPGAKPPAKAPYRMAPPELAELRKQLGEL 838

Query: 181 LKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGV 240
           L+AGF+RP KAPYGAPVLFQKKKDGTLRLC+DYRALNKVTVRNKYP+P+I+DLFDQL G 
Sbjct: 839 LEAGFLRPSKAPYGAPVLFQKKKDGTLRLCVDYRALNKVTVRNKYPIPLIADLFDQLSGA 898

Query: 241 KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYE 300
           K+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPFGLTNAPATF TLMNQVF +
Sbjct: 899 KFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFRD 958

Query: 301 YLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +LD+FV+VYLDDIV++S TLEEH  H+++V  +LR+NQL V
Sbjct: 959 FLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQLFV 999

[Close]

BLAST of CmaCh16G007900.1 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 477.6 bits (1228), Expect = 1.8e-131
Identity = 226/341 (66.28%), Postives = 279/341 (81.82%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           MKAVNS+ALP VG++K+VP K+G W   +DL+V  MDDFDV+LGM+FL++ K IP+P A 
Sbjct: 372 MKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKKKAIPIPAAN 431

Query: 61  CLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEI 120
            L++      V+P   KQL N +++SA+Q K+G+ R EP+++A+ +      +ET P  +
Sbjct: 432 SLLMMGEQTGVVPVQRKQLNNPKLLSALQFKKGVRRNEPSYIALVVAREGEDDETTPPMV 491

Query: 121 NEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDEL 180
            + L  + D+MP++LP+ LPPRR IDH IEL+PG KPPAK  YRMAPPELAELRKQL EL
Sbjct: 492 LDALKSFNDVMPDNLPRNLPPRRDIDHNIELIPGAKPPAKAPYRMAPPELAELRKQLGEL 551

Query: 181 LKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGV 240
           L+AGF+RP KAPYGAPVLFQKKKDG LRLC+DYRALNKVTVRNKYP+P+I+DLFDQL G 
Sbjct: 552 LEAGFLRPSKAPYGAPVLFQKKKDGILRLCVDYRALNKVTVRNKYPIPLIADLFDQLSGA 611

Query: 241 KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYE 300
           K+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPFGLTNAPATF TLMNQVF +
Sbjct: 612 KFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFRD 671

Query: 301 YLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +LD+FV+VYLDDIV++S TLEEH  H+++V  +LR+NQL V
Sbjct: 672 FLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQLFV 712

[Close]

BLAST of CmaCh16G007900.1 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 474.6 bits (1220), Expect = 1.5e-130
Identity = 225/341 (65.98%), Postives = 278/341 (81.52%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           MKAVNS+ALP VG++K+VP K+G W   +DL+V  MDDFDV+LGM+FL++ K IP+P A 
Sbjct: 301 MKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKKKAIPIPAAN 360

Query: 61  CLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEI 120
            L++      V+P   KQL N +++SA Q K+G+ R+EP+++A+ +      +ET P  +
Sbjct: 361 SLLMMGEQTGVVPVQRKQLNNPKLLSAFQFKKGVRRKEPSYIALVVAREGEDDETTPPMV 420

Query: 121 NEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDEL 180
            + L  + D+MP++LP+ LPPRR IDH IEL+PG KPPAK  YRMAPPELAELRKQL EL
Sbjct: 421 LDALKSFNDVMPDNLPRNLPPRRDIDHNIELIPGAKPPAKALYRMAPPELAELRKQLGEL 480

Query: 181 LKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGV 240
           L+AGF+RP KAPYGAPVLFQKKKDGTLRLC+DYRALNKVTVRNKYP+P+I+DLFDQL G 
Sbjct: 481 LEAGFLRPSKAPYGAPVLFQKKKDGTLRLCVDYRALNKVTVRNKYPIPLIADLFDQLSGA 540

Query: 241 KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYE 300
           K+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPF LTNAPATF TLMNQVF +
Sbjct: 541 KFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFELTNAPATFCTLMNQVFRD 600

Query: 301 YLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +LD+FV+VYLDDIV++  TLEEH  H+++V  +LR+NQL V
Sbjct: 601 FLDKFVVVYLDDIVIFRPTLEEHVEHIRMVLQRLRENQLFV 641

[Close]

BLAST of CmaCh16G007900.1 vs. NCBI nr
Match: gi|1009176455|ref|XP_015869440.1| (PREDICTED: uncharacterized protein LOC107406761 [Ziziphus jujuba])

HSP 1 Score: 437.6 bits (1124), Expect = 2.1e-119
Identity = 210/341 (61.58%), Postives = 267/341 (78.30%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +K VN+EA P+ G+++ V   +G W G ++  +A +DDFD+VLGMEFL +  V+P+P   
Sbjct: 298 LKTVNAEAKPLDGMARNVELHLGTWQGNVNFSIAPLDDFDIVLGMEFLRQFNVVPLPRYN 357

Query: 61  CLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEI 120
            + I +  P +IP +I +      +SA+QLK+G+ + EPTF+A    E   T +  P E+
Sbjct: 358 TVCIMEGGPCMIP-TIHKPSTSNRLSAMQLKKGVKKGEPTFLATLREEEEVTSKEPPKEV 417

Query: 121 NEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDEL 180
           ++VL ++ D+MP  LP+ LPPRR +DH IEL PG KPPAK  YRM+P EL ELR+QL EL
Sbjct: 418 SQVLEEFKDVMPPQLPKKLPPRREVDHCIELEPGAKPPAKAPYRMSPSELEELRRQLKEL 477

Query: 181 LKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGV 240
           L AG+I+P KAPYGAPVLFQKK DG+LRLCIDYRALNKVT++NKYP+P+I+DLFDQL G 
Sbjct: 478 LDAGYIQPSKAPYGAPVLFQKKHDGSLRLCIDYRALNKVTIKNKYPIPLIADLFDQLGGA 537

Query: 241 KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYE 300
           +YFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGA+EFLVMPFGLTNAPATF TLMN++F+ 
Sbjct: 538 RYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAYEFLVMPFGLTNAPATFCTLMNKIFHP 597

Query: 301 YLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           YLD+FV+VYLDDIV+YS TLEEH  HL++VF  L+ N+L V
Sbjct: 598 YLDKFVVVYLDDIVIYSKTLEEHIHHLRIVFKVLKDNELYV 637

The following BLAST results are available for this feature:

BLAST of CmaCh16G007900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRPO_OENBE	6.1e-47	71.09	RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1	[more]
YI31B_YEAST	1.7e-41	39.27	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YG31B_YEAST	1.7e-41	39.27	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
TF25_SCHPO	5.6e-40	37.78	Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF26_SCHPO	5.6e-40	37.78	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmaCh16G007900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AZ16_VITVI	1.3e-115	61.92	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1	[more]
A5BDH9_VITVI	3.1e-114	60.93	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1	[more]
A5AN22_VITVI	1.2e-113	61.05	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1	[more]
A5BX03_VITVI	1.7e-112	60.35	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1	[more]
A5AUJ7_VITVI	2.1e-110	59.08	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040632 PE=4 SV=1	[more]

BLAST of CmaCh16G007900.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G007900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114583\|ref\|XP_008457127.1\|	5.4e-136	79.41	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me...	[more]
gi\|1009175511\|ref\|XP_015868924.1\|	2.1e-132	66.86	PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba]	[more]
gi\|1009181571\|ref\|XP_015872243.1\|	1.8e-131	66.28	PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba]	[more]
gi\|1009161831\|ref\|XP_015899105.1\|	1.5e-130	65.98	PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba]	[more]
gi\|1009176455\|ref\|XP_015869440.1\|	2.1e-119	61.58	PREDICTED: uncharacterized protein LOC107406761 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh16G007900	CmaCh16G007900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh16G007900.1	CmaCh16G007900.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G007900.1.exon.1	CmaCh16G007900.1.exon.1	exon
CmaCh16G007900.1.exon.2	CmaCh16G007900.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G007900.1.CDS.1	CmaCh16G007900.1.CDS.1	CDS
CmaCh16G007900.1.CDS.2	CmaCh16G007900.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 201..339 score: 1.5
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 181..346 score: 9
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 149..281 score: 1.0
None	No IPR available	GENE3D	G3DSA:3.30.70.270		coord: 282..337 score: 2.
None	No IPR available	PANTHER	PTHR10178	GAG/POL/ENV POLYPROTEIN	coord: 38..62 score: 2.2E-95coord: 114..339 score: 2.2
None	No IPR available	PANTHER	PTHR10178:SF283	SUBFAMILY NOT NAMED	coord: 38..62 score: 2.2E-95coord: 114..339 score: 2.2
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 123..341 score: 6.89