CmaCh16G007900 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G007900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cma_Chr16 : 4340463 .. 4341579 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTGTCAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCTAAAAGAGTTCCCTTTAAAATAGGGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGTACTTGGGATGGAGTTCCTCCTAGAACACAAAGTTATCCCAATGCCGCTGGCAAAGTGCTTAGTGATCACCGACCGCAACCCCACAGTAATACCTGCAAGCATCAAGCAACTAGGTAATCTTCGAATGATCTCGGCCATACAATTGAAAAGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAACGAGGTACTAAACGACTATGCTGACATAATGCCAGAGAGCTTACCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCGTCCCCGGAGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGGGATTCATCCGCCCGGAAAAGGCACCCTATGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGTATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGTCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTCGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTCCAGCTACTTTCTACACGTTGATGAACCAAGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATACCTCGACGACATAGTGGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTGCGACAAAACCAACTGTATGTCAAGAAAGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAGATTAGTATGGATAGCGATAAGATAA

mRNA sequence

ATGAAAGCTGTCAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCTAAAAGAGTTCCCTTTAAAATAGGGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGTACTTGGGATGGAGTTCCTCCTAGAACACAAAGTTATCCCAATGCCGCTGGCAAAGTGCTTAGTGATCACCGACCGCAACCCCACAGTAATACCTGCAAGCATCAAGCAACTAGGTAATCTTCGAATGATCTCGGCCATACAATTGAAAAGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAACGAGGTACTAAACGACTATGCTGACATAATGCCAGAGAGCTTACCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCGTCCCCGGAGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGGGATTCATCCGCCCGGAAAAGGCACCCTATGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGTATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGTCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTCGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTCCAGCTACTTTCTACACGTTGATGAACCAAGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATACCTCGACGACATAGTGGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTGCGACAAAACCAACTATTAGTATGGATAGCGATAAGATAA

Coding sequence (CDS)

ATGAAAGCTGTCAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCTAAAAGAGTTCCCTTTAAAATAGGGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGTACTTGGGATGGAGTTCCTCCTAGAACACAAAGTTATCCCAATGCCGCTGGCAAAGTGCTTAGTGATCACCGACCGCAACCCCACAGTAATACCTGCAAGCATCAAGCAACTAGGTAATCTTCGAATGATCTCGGCCATACAATTGAAAAGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAACGAGGTACTAAACGACTATGCTGACATAATGCCAGAGAGCTTACCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCGTCCCCGGAGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGGGATTCATCCGCCCGGAAAAGGCACCCTATGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGTATAGACTATAGAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAACTTCACGGGGTCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTCGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTCCAGCTACTTTCTACACGTTGATGAACCAAGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATACCTCGACGACATAGTGGTTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTGCGACAAAACCAACTATTAGTATGGATAGCGATAAGATAA

Protein sequence

MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLVWIAIR

Homology

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BLAST of CmaCh16G007900 vs. Swiss-Prot
Match: RRPO_OENBE (RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.1e-47
Identity = 91/128 (71.09%), Postives = 107/128 (83.59%), Query Frame = 1


Query: 206 TLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKT 265
           +LR+CIDYRAL KVT++NKYP+P + DLFD+L    +FTKLDLRSGY+QVRIA+GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 266 TCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVV---YSTTLEE 325
           TCVTRYG+FEF VMPFGLTNA ATF  LMN V YEYLD FV+VYLDD+VV   YS +L E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 326 HKVHLKLV 331
           H  HL++V
Sbjct: 125 HIKHLRVV 132

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BLAST of CmaCh16G007900 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-41
Identity = 97/247 (39.27%), Postives = 136/247 (55.06%), Query Frame = 1


Query: 109 VTTTEETVPNEINEVLNDYADIMPESLPQT--------LPPRRG------IDHEIELVPG 168
           V+T +   PN  +    D    +P  L Q         LPPR        + H+IE+ PG
Sbjct: 560 VSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPG 619

Query: 169 VKPPAKNAYRMAPPELAELRKQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYR 228
            + P    Y +      E+ K + +LL   FI P K+P  +PV+   KKDGT RLC+DYR
Sbjct: 620 ARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYR 679

Query: 229 ALNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAF 288
            LNK T+ + +PLP I +L  ++   + FT LDL SGY+Q+ +   D  KT  VT  G +
Sbjct: 680 TLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKY 739

Query: 289 EFLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKL 342
           E+ VMPFGL NAP+TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++L
Sbjct: 740 EYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERL 799

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BLAST of CmaCh16G007900 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-41
Identity = 97/247 (39.27%), Postives = 136/247 (55.06%), Query Frame = 1


Query: 109 VTTTEETVPNEINEVLNDYADIMPESLPQT--------LPPRRG------IDHEIELVPG 168
           V+T +   PN  +    D    +P  L Q         LPPR        + H+IE+ PG
Sbjct: 534 VSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPG 593

Query: 169 VKPPAKNAYRMAPPELAELRKQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYR 228
            + P    Y +      E+ K + +LL   FI P K+P  +PV+   KKDGT RLC+DYR
Sbjct: 594 ARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYR 653

Query: 229 ALNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAF 288
            LNK T+ + +PLP I +L  ++   + FT LDL SGY+Q+ +   D  KT  VT  G +
Sbjct: 654 TLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKY 713

Query: 289 EFLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKL 342
           E+ VMPFGL NAP+TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++L
Sbjct: 714 EYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERL 773

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BLAST of CmaCh16G007900 vs. Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.6e-40
Identity = 85/225 (37.78%), Postives = 137/225 (60.89%), Query Frame = 1


Query: 119 EINEVLNDYADIMPESLPQTLP-PRRGIDHEIELVP-GVKPPAKNAYRMAPPELAELRKQ 178
           E+ ++  ++ DI  E+  + LP P +G++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 179 LDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQ 238
           +++ LK+G IR  KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 239 LHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQ 298
           + G   FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 299 VFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L++
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596

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BLAST of CmaCh16G007900 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.6e-40
Identity = 85/225 (37.78%), Postives = 137/225 (60.89%), Query Frame = 1


Query: 119 EINEVLNDYADIMPESLPQTLP-PRRGIDHEIELVP-GVKPPAKNAYRMAPPELAELRKQ 178
           E+ ++  ++ DI  E+  + LP P +G++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 179 LDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQ 238
           +++ LK+G IR  KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 239 LHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQ 298
           + G   FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ APA F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 299 VFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L++
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596

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BLAST of CmaCh16G007900 vs. TrEMBL
Match: A5AZ16_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 1.3e-115
Identity = 213/344 (61.92%), Postives = 266/344 (77.33%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +KAVNS A P  GV++ V   IG W G +D  VA MD F +VLG++FL + K +P+P  +
Sbjct: 436 LKAVNSAAKPSHGVARGVTMHIGSWEGRVDFTVAPMDHFKMVLGIDFLQKVKAVPLPFLR 495

Query: 61  CLVITDRNPTVIPASIKQLGNLR--MISAIQLKRGLAREEPTFMAIPLMEVTT-TEETVP 120
            + I +   + +  ++ + G L+  M+S +Q+K+GL REE T++A    E    + E +P
Sbjct: 496 SMAILEEEKSCMVPTVTE-GTLKTPMLSTMQVKKGLKREEVTYLATLKEERDDGSGEPMP 555

Query: 121 NEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQL 180
            EI  VL+++ D+MP  LP+ LPPRR  DH+IEL PG KPPA   YRMAPPEL ELR+QL
Sbjct: 556 KEIEGVLDEFKDVMPPELPKRLPPRREEDHKIELEPGSKPPAMGPYRMAPPELEELRRQL 615

Query: 181 DELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQL 240
            ELL AGFI+P KAPYGAPVLFQKK DG+LR+CIDYRALNKVTV+NKYP+P+I+DLFDQL
Sbjct: 616 KELLDAGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIADLFDQL 675

Query: 241 HGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQV 300
              KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG++EFLVMPFGLTNAPATF TLMN++
Sbjct: 676 GRAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFCTLMNKI 735

Query: 301 FYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           F+ YLD+FV+VYLDDIV+YS TL+EH+ HL+ VF  LRQN+L V
Sbjct: 736 FHPYLDKFVVVYLDDIVIYSNTLKEHEEHLRKVFKILRQNELYV 778

[Close]

BLAST of CmaCh16G007900 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 3.1e-114
Identity = 209/343 (60.93%), Postives = 259/343 (75.51%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +KAVNS A P  GV++ V   IG W G +D  VA MDDF +VLGM+FL + K +P+P  +
Sbjct: 479 LKAVNSAAKPSHGVARGVSMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPFLR 538

Query: 61  CL-VITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTT-TEETVPN 120
            + ++ +  P ++P   +      M+SA+Q+K+GL REE T++A    E      E +P 
Sbjct: 539 SMAILEEEKPCMVPTVTEGTLKTPMLSAMQVKKGLKREEVTYLATLKEERDDGLREPMPK 598

Query: 121 EINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLD 180
           EI  VL+++ D+MP  LP+ LPPRR  DH+IEL PG KPPA   YRMAPPEL ELR+QL 
Sbjct: 599 EIEGVLDEFKDVMPPELPKRLPPRREEDHKIELEPGAKPPAMGPYRMAPPELEELRRQLK 658

Query: 181 ELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLH 240
           ELL  GFI+P KAPYGAPVLFQKK DG+LR+CIDYRALNKVTV+NKYP+P+I+DLFDQL 
Sbjct: 659 ELLDVGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIADLFDQLG 718

Query: 241 GVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVF 300
              YFTKLDLR GYYQVRI EGDE KTTCVTRYG++EFLVMPFGLTNAPATF TL+N++F
Sbjct: 719 RASYFTKLDLRLGYYQVRIVEGDESKTTCVTRYGSYEFLVMPFGLTNAPATFCTLVNKIF 778

Query: 301 YEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           + YLD+FV+VYLDDIV+YS TL+EH  HL+ VF  LRQN+L V
Sbjct: 779 HPYLDKFVVVYLDDIVIYSNTLKEHVKHLRKVFKILRQNELYV 821

[Close]

BLAST of CmaCh16G007900 vs. TrEMBL
Match: A5AN22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.2e-113
Identity = 210/344 (61.05%), Postives = 263/344 (76.45%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +KAVNS A P  GV++ V   IG W G ++  VA MDDF +VL M+FL + K +P+P  +
Sbjct: 365 LKAVNSTAKPSHGVARGVTMHIGSWKGRVNFTVAPMDDFKMVLRMDFLQKAKAVPLPFLR 424

Query: 61  CLVITDRNPTVIPASIKQLGNLR--MISAIQLKRGLAREEPTFMAIPLMEVTT-TEETVP 120
            + I +   + +  ++ + G L+  M+SA+Q+K+GL R++ T++A    E    + E +P
Sbjct: 425 LMAILEEEKSCMVHTVTE-GTLKTPMLSAMQVKKGLKRKKVTYLATLKEERDDGSGEPMP 484

Query: 121 NEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQL 180
            EI  VL+++ D+MP  LP+ LPPRR  DH+IEL P  KPPA   YRMAPPEL ELR+QL
Sbjct: 485 KEIKGVLDEFKDVMPPELPKRLPPRREEDHKIELEPETKPPAMGPYRMAPPELEELRRQL 544

Query: 181 DELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQL 240
            ELL AGFI+P K PYGAPVLFQKK DG+LR+CIDYRALNKVTV+NKYP+P+I DLFDQL
Sbjct: 545 KELLDAGFIQPSKVPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIVDLFDQL 604

Query: 241 HGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQV 300
              +YFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG++EFLVMPFGLTNAPATFYTLMN +
Sbjct: 605 GRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFYTLMNNI 664

Query: 301 FYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           F+ YLD+FV+VYLDDIV+YS TL+EH  HL+ VF  LRQN+L V
Sbjct: 665 FHPYLDKFVVVYLDDIVIYSNTLKEHVEHLRKVFKILRQNELYV 707

[Close]

BLAST of CmaCh16G007900 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 1.7e-112
Identity = 207/343 (60.35%), Postives = 261/343 (76.09%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +KAVNS A P  GV++ V   IG W G +D  VA MDDF +VLGM+FL + K +P+P  +
Sbjct: 474 LKAVNSAAKPSHGVARGVTMHIGLWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPFLR 533

Query: 61  CL-VITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTT-TEETVPN 120
            + ++ +  P ++P   +      M+SA+Q+K+GL REE T++A    E    + E +P 
Sbjct: 534 SMAILEEEKPCMVPTVTEGTPKTPMLSAMQVKKGLKREEVTYLATLKEEKDDGSGEPMPK 593

Query: 121 EINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLD 180
           EI  VL+++ D+M   LP+ L PRR  +H+I+L  G KP A   YRMAPPEL ELR+QL 
Sbjct: 594 EIKGVLDEFKDVMXPELPKRLXPRREEBHKIKLEXGAKPRAMGPYRMAPPELEELRRQLK 653

Query: 181 ELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLH 240
           ELL AGFI+P KAPYGAPVLFQKK DG+LR+CIDYRALNKVTV+NKYP+P+I+DLFDQL 
Sbjct: 654 ELLDAGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIADLFDQLG 713

Query: 241 GVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVF 300
             +YFTKLDLRSGYYQVRIAEGDEPKTTCVTRYG++EFLVMPFGLTNAPATF TLMN++F
Sbjct: 714 RARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFCTLMNKIF 773

Query: 301 YEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           + YLD+FV+ YLDDIV+YS TL+EH+ HL+ VF  LRQN+L V
Sbjct: 774 HPYLDKFVVXYLDDIVIYSNTLKEHEEHLRKVFKILRQNKLYV 816

[Close]

BLAST of CmaCh16G007900 vs. TrEMBL
Match: A5AUJ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040632 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 2.1e-110
Identity = 205/347 (59.08%), Postives = 264/347 (76.08%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMP-LA 60
           +KAVNS+A  I GV+K VP KIGDW G   L+   +DDFD++LG++FLL  KV  +P L 
Sbjct: 408 IKAVNSKAQKIQGVAKNVPMKIGDWEGMCSLLCVPLDDFDLILGVDFLLRAKVALIPHLG 467

Query: 61  KCLVITDRNPTVIPASIKQ---LGNLRMISAIQLKRGLAREEPTFMA--IPLMEVTTTEE 120
             +V+ ++ P  + A   +    G   M+SAIQLK+GL R + T++A  I + E  T E 
Sbjct: 468 GLMVLEEKQPCFVQALRAKDGGKGQPEMLSAIQLKKGLKRGQETYVAALIEIKEGQTME- 527

Query: 121 TVPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELR 180
            VP+ + ++L +++D+MP  LP+ LPPRR IDH+IEL+PG K PA+  YRM+P EL ELR
Sbjct: 528 -VPDSVVKILKEFSDVMPAELPKELPPRRPIDHKIELLPGTKAPAQAPYRMSPAELLELR 587

Query: 181 KQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLF 240
           KQL ELL AG I+P +APYGAPVLFQKK DG+LR+C+DYRALNKVT++NKYP+P+ ++LF
Sbjct: 588 KQLKELLDAGLIQPSRAPYGAPVLFQKKHDGSLRMCVDYRALNKVTIKNKYPIPLAAELF 647

Query: 241 DQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLM 300
           D+L    YFTKLDLRSGY+QVR+A GDE KTTCV RYG++EFLVMPFGLTNAPATF  LM
Sbjct: 648 DRLSKASYFTKLDLRSGYWQVRVAAGDEGKTTCVXRYGSYEFLVMPFGLTNAPATFCNLM 707

Query: 301 NQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           N V ++YLD FV+VYLDDIVVYS TL EH+ HL+LVF +LR+N+L V
Sbjct: 708 NDVLFDYLDXFVVVYLDDIVVYSKTLTEHEKHLRLVFQRLRENRLYV 752

[Close]

BLAST of CmaCh16G007900 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 492.7 bits (1267), Expect = 5.4e-136
Identity = 243/306 (79.41%), Postives = 271/306 (88.56%), Query Frame = 1


Query: 36  MDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLA 95
           MDDFDVVLGMEFLLEH+VI MPLAKCLVIT   P+V+   ++Q   L+MISA+QLK+GL+
Sbjct: 1   MDDFDVVLGMEFLLEHQVILMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLKKGLS 60

Query: 96  REEPTFMAIPLMEVTTTEETVPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGV 155
           R+EPTFMAIPL     + ETVP EI  VL  Y D+MP+S P++LPPRR IDHEIELVPG 
Sbjct: 61  RDEPTFMAIPLNSSENSGETVPTEIVRVLEKYRDVMPDSFPKSLPPRRMIDHEIELVPGT 120

Query: 156 KPPAKNAYRMAPPELAELRKQLDELLKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRA 215
           KP AKNAYRMAPPELAELRKQLDELL AGFIRP KAPYGAPVLFQKKKDG+LRLCIDYRA
Sbjct: 121 KPRAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRA 180

Query: 216 LNKVTVRNKYPLPIISDLFDQLHGVKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFE 275
           LNK+TVRNKYPLPII+DLFD+LHG KYF+KLDLRSGYYQVRIAEGDEPKTTCVTRYGAFE
Sbjct: 181 LNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFE 240

Query: 276 FLVMPFGLTNAPATFYTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLR 335
           FLVMPFGLTNAPATF TLMNQVF+EYLD+FV+VYLDDIVVYS T+EEH+ HL+ VF KL+
Sbjct: 241 FLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSMTMEEHRDHLQKVFQKLK 300

Query: 336 QNQLLV 342
           +NQL V
Sbjct: 301 ENQLYV 306

[Close]

BLAST of CmaCh16G007900 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 480.7 bits (1236), Expect = 2.1e-132
Identity = 228/341 (66.86%), Postives = 281/341 (82.40%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           MKAVNS+ALP VG++K+VP K+G W   +DL+V  MDDFDV+LGM+FL++ K IP+P A 
Sbjct: 659 MKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKKKAIPIPAAN 718

Query: 61  CLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEI 120
            L++      VIP   KQL N +++SA+Q K+G+ R+EP+++A+ +      +ET P  +
Sbjct: 719 SLLMMGEQTGVIPVQRKQLNNPKLLSALQFKKGVRRKEPSYIALVVAREGEDDETTPPMV 778

Query: 121 NEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDEL 180
            + L  + D+MP++LP+ LPPRR IDH IEL+PG KPPAK  YRMAPPELAELRKQL EL
Sbjct: 779 LDALKSFNDVMPDNLPRNLPPRRDIDHNIELIPGAKPPAKAPYRMAPPELAELRKQLGEL 838

Query: 181 LKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGV 240
           L+AGF+RP KAPYGAPVLFQKKKDGTLRLC+DYRALNKVTVRNKYP+P+I+DLFDQL G 
Sbjct: 839 LEAGFLRPSKAPYGAPVLFQKKKDGTLRLCVDYRALNKVTVRNKYPIPLIADLFDQLSGA 898

Query: 241 KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYE 300
           K+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPFGLTNAPATF TLMNQVF +
Sbjct: 899 KFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFRD 958

Query: 301 YLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +LD+FV+VYLDDIV++S TLEEH  H+++V  +LR+NQL V
Sbjct: 959 FLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQLFV 999

[Close]

BLAST of CmaCh16G007900 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 477.6 bits (1228), Expect = 1.8e-131
Identity = 226/341 (66.28%), Postives = 279/341 (81.82%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           MKAVNS+ALP VG++K+VP K+G W   +DL+V  MDDFDV+LGM+FL++ K IP+P A 
Sbjct: 372 MKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKKKAIPIPAAN 431

Query: 61  CLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEI 120
            L++      V+P   KQL N +++SA+Q K+G+ R EP+++A+ +      +ET P  +
Sbjct: 432 SLLMMGEQTGVVPVQRKQLNNPKLLSALQFKKGVRRNEPSYIALVVAREGEDDETTPPMV 491

Query: 121 NEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDEL 180
            + L  + D+MP++LP+ LPPRR IDH IEL+PG KPPAK  YRMAPPELAELRKQL EL
Sbjct: 492 LDALKSFNDVMPDNLPRNLPPRRDIDHNIELIPGAKPPAKAPYRMAPPELAELRKQLGEL 551

Query: 181 LKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGV 240
           L+AGF+RP KAPYGAPVLFQKKKDG LRLC+DYRALNKVTVRNKYP+P+I+DLFDQL G 
Sbjct: 552 LEAGFLRPSKAPYGAPVLFQKKKDGILRLCVDYRALNKVTVRNKYPIPLIADLFDQLSGA 611

Query: 241 KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYE 300
           K+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPFGLTNAPATF TLMNQVF +
Sbjct: 612 KFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFRD 671

Query: 301 YLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +LD+FV+VYLDDIV++S TLEEH  H+++V  +LR+NQL V
Sbjct: 672 FLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQLFV 712

[Close]

BLAST of CmaCh16G007900 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 474.6 bits (1220), Expect = 1.5e-130
Identity = 225/341 (65.98%), Postives = 278/341 (81.52%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           MKAVNS+ALP VG++K+VP K+G W   +DL+V  MDDFDV+LGM+FL++ K IP+P A 
Sbjct: 301 MKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKKKAIPIPAAN 360

Query: 61  CLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEI 120
            L++      V+P   KQL N +++SA Q K+G+ R+EP+++A+ +      +ET P  +
Sbjct: 361 SLLMMGEQTGVVPVQRKQLNNPKLLSAFQFKKGVRRKEPSYIALVVAREGEDDETTPPMV 420

Query: 121 NEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDEL 180
            + L  + D+MP++LP+ LPPRR IDH IEL+PG KPPAK  YRMAPPELAELRKQL EL
Sbjct: 421 LDALKSFNDVMPDNLPRNLPPRRDIDHNIELIPGAKPPAKALYRMAPPELAELRKQLGEL 480

Query: 181 LKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGV 240
           L+AGF+RP KAPYGAPVLFQKKKDGTLRLC+DYRALNKVTVRNKYP+P+I+DLFDQL G 
Sbjct: 481 LEAGFLRPSKAPYGAPVLFQKKKDGTLRLCVDYRALNKVTVRNKYPIPLIADLFDQLSGA 540

Query: 241 KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYE 300
           K+FTKLDLRSGYYQVRIAEGDE KTTCVTRYGAFEFLVMPF LTNAPATF TLMNQVF +
Sbjct: 541 KFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFELTNAPATFCTLMNQVFRD 600

Query: 301 YLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           +LD+FV+VYLDDIV++  TLEEH  H+++V  +LR+NQL V
Sbjct: 601 FLDKFVVVYLDDIVIFRPTLEEHVEHIRMVLQRLRENQLFV 641

[Close]

BLAST of CmaCh16G007900 vs. NCBI nr
Match: gi|1009176455|ref|XP_015869440.1| (PREDICTED: uncharacterized protein LOC107406761 [Ziziphus jujuba])

HSP 1 Score: 437.6 bits (1124), Expect = 2.1e-119
Identity = 210/341 (61.58%), Postives = 267/341 (78.30%), Query Frame = 1


Query: 1   MKAVNSEALPIVGVSKRVPFKIGDWTGELDLVVARMDDFDVVLGMEFLLEHKVIPMPLAK 60
           +K VN+EA P+ G+++ V   +G W G ++  +A +DDFD+VLGMEFL +  V+P+P   
Sbjct: 298 LKTVNAEAKPLDGMARNVELHLGTWQGNVNFSIAPLDDFDIVLGMEFLRQFNVVPLPRYN 357

Query: 61  CLVITDRNPTVIPASIKQLGNLRMISAIQLKRGLAREEPTFMAIPLMEVTTTEETVPNEI 120
            + I +  P +IP +I +      +SA+QLK+G+ + EPTF+A    E   T +  P E+
Sbjct: 358 TVCIMEGGPCMIP-TIHKPSTSNRLSAMQLKKGVKKGEPTFLATLREEEEVTSKEPPKEV 417

Query: 121 NEVLNDYADIMPESLPQTLPPRRGIDHEIELVPGVKPPAKNAYRMAPPELAELRKQLDEL 180
           ++VL ++ D+MP  LP+ LPPRR +DH IEL PG KPPAK  YRM+P EL ELR+QL EL
Sbjct: 418 SQVLEEFKDVMPPQLPKKLPPRREVDHCIELEPGAKPPAKAPYRMSPSELEELRRQLKEL 477

Query: 181 LKAGFIRPEKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGV 240
           L AG+I+P KAPYGAPVLFQKK DG+LRLCIDYRALNKVT++NKYP+P+I+DLFDQL G 
Sbjct: 478 LDAGYIQPSKAPYGAPVLFQKKHDGSLRLCIDYRALNKVTIKNKYPIPLIADLFDQLGGA 537

Query: 241 KYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFYTLMNQVFYE 300
           +YFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGA+EFLVMPFGLTNAPATF TLMN++F+ 
Sbjct: 538 RYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAYEFLVMPFGLTNAPATFCTLMNKIFHP 597

Query: 301 YLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLLV 342
           YLD+FV+VYLDDIV+YS TLEEH  HL++VF  L+ N+L V
Sbjct: 598 YLDKFVVVYLDDIVIYSKTLEEHIHHLRIVFKVLKDNELYV 637

The following BLAST results are available for this feature:

BLAST of CmaCh16G007900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRPO_OENBE	6.1e-47	71.09	RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1	[more]
YI31B_YEAST	1.7e-41	39.27	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YG31B_YEAST	1.7e-41	39.27	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
TF25_SCHPO	5.6e-40	37.78	Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF26_SCHPO	5.6e-40	37.78	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmaCh16G007900 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AZ16_VITVI	1.3e-115	61.92	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1	[more]
A5BDH9_VITVI	3.1e-114	60.93	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1	[more]
A5AN22_VITVI	1.2e-113	61.05	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1	[more]
A5BX03_VITVI	1.7e-112	60.35	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1	[more]
A5AUJ7_VITVI	2.1e-110	59.08	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040632 PE=4 SV=1	[more]

BLAST of CmaCh16G007900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G007900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114583\|ref\|XP_008457127.1\|	5.4e-136	79.41	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me...	[more]
gi\|1009175511\|ref\|XP_015868924.1\|	2.1e-132	66.86	PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba]	[more]
gi\|1009181571\|ref\|XP_015872243.1\|	1.8e-131	66.28	PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba]	[more]
gi\|1009161831\|ref\|XP_015899105.1\|	1.5e-130	65.98	PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba]	[more]
gi\|1009176455\|ref\|XP_015869440.1\|	2.1e-119	61.58	PREDICTED: uncharacterized protein LOC107406761 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G007900.1	CmaCh16G007900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 201..339 score: 1.5
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 181..346 score: 9
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 149..281 score: 1.0
None	No IPR available	GENE3D	G3DSA:3.30.70.270		coord: 282..337 score: 2.
None	No IPR available	PANTHER	PTHR10178	GAG/POL/ENV POLYPROTEIN	coord: 38..62 score: 2.2E-95coord: 114..339 score: 2.2
None	No IPR available	PANTHER	PTHR10178:SF283	SUBFAMILY NOT NAMED	coord: 38..62 score: 2.2E-95coord: 114..339 score: 2.2
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 123..341 score: 6.89

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G007900	Cucumber (Gy14) v2	cgybcmaB084
CmaCh16G007900	Cucumber (Gy14) v2	cgybcmaB341
CmaCh16G007900	Melon (DHL92) v3.6.1	cmamedB330
CmaCh16G007900	Melon (DHL92) v3.6.1	cmamedB345
CmaCh16G007900	Silver-seed gourd	carcmaB0946
CmaCh16G007900	Silver-seed gourd	carcmaB1243
CmaCh16G007900	Cucumber (Chinese Long) v3	cmacucB0371
CmaCh16G007900	Cucumber (Chinese Long) v3	cmacucB0382
CmaCh16G007900	Watermelon (97103) v2	cmawmbB336
CmaCh16G007900	Watermelon (97103) v2	cmawmbB343
CmaCh16G007900	Wax gourd	cmawgoB0423
CmaCh16G007900	Wax gourd	cmawgoB0414
CmaCh16G007900	Cucurbita maxima (Rimu)	cmacmaB041
CmaCh16G007900	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh16G007900	Cucumber (Gy14) v1	cgycmaB0121
CmaCh16G007900	Cucumber (Gy14) v1	cgycmaB0337
CmaCh16G007900	Cucurbita moschata (Rifu)	cmacmoB317
CmaCh16G007900	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G007900	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G007900	Wild cucumber (PI 183967)	cmacpiB324
CmaCh16G007900	Wild cucumber (PI 183967)	cmacpiB334
CmaCh16G007900	Cucumber (Chinese Long) v2	cmacuB318
CmaCh16G007900	Cucumber (Chinese Long) v2	cmacuB328
CmaCh16G007900	Melon (DHL92) v3.5.1	cmameB292
CmaCh16G007900	Watermelon (Charleston Gray)	cmawcgB283
CmaCh16G007900	Watermelon (Charleston Gray)	cmawcgB294
CmaCh16G007900	Watermelon (97103) v1	cmawmB306
CmaCh16G007900	Watermelon (97103) v1	cmawmB309
CmaCh16G007900	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G007900	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G007900	Cucurbita pepo (Zucchini)	cmacpeB362
CmaCh16G007900	Bottle gourd (USVL1VR-Ls)	cmalsiB315