CmaCh16G003380.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G003380.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 1587269 .. 1587995 (-)
Sequence length234
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGTACTTCATAAGTTTCGAAACTCGCTGCTTGGTTTCCTTTCGAAACGAATTGATGAACGAATTACGGAGGAATAAATTCCGTTGAATTGTGATTTATTTGATGCTCGATGTTCGTTCTTTTTTCCGTGTTGATCTCTGTTTACTATTGATTTCGGCTTCTGTAAATTTAAAATCATCTGGAGATTGAATTTCTGTTGTTTATGTTTTTATCTTAATTTCAGATTAATTTTCATGCATTTTAAAGTTTTTGTTATCTGTCAAGCTATTTGTGATTGCATTGTAAAAGAGTTGCATAAATCTTGTTGGCAATTATCCTTTACATTCCGACGCAACACTAGACTCAACCATTTCAGAATTATCACCGCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGTTAATCACACGAACAGAAACCCCACCAATATTTTCAGAGTCTTCCCTATTCCATCTGTTTTAAGAAAAATTTCTCACATTATTACTTATGATCTTTTCTCTCTCTTGATCATCTTTGATTGGAAGGCTCTTTTCTGA

mRNA sequence

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGCTCTTTTCTGA

Coding sequence (CDS)

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGCTCTTTTCTGA

Protein sequence

MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRKQPIKFLIILIKAFSTLLSSKALF
Homology
[Close]
BLAST of CmaCh16G003380.1 vs. TrEMBL
Match: A0A0A0LBV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199040 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.3e-11
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109

[Close]
BLAST of CmaCh16G003380.1 vs. TrEMBL
Match: A0A0D2NHH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G234400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRS+GSLSR++IS+ R  SLRS P LPRLR P +++ PRLQSRRL+++ SR
Sbjct: 1  MAWRSAGSLSRSVISAARAPSLRSPPPLPRLR-PSVSSAPRLQSRRLSYAPSR 52

[Close]
BLAST of CmaCh16G003380.1 vs. TrEMBL
Match: A0A0B0PFR0_GOSAR (Caspase-6 OS=Gossypium arboreum GN=F383_28660 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRS+GSLSR++IS+ R  SLRS P LPRLR P +++ PRLQSRRL+++ SR
Sbjct: 46 MAWRSAGSLSRSVISAARAPSLRSPPPLPRLR-PSVSSAPRLQSRRLSYAPSR 97

[Close]
BLAST of CmaCh16G003380.1 vs. TrEMBL
Match: F6H6A0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00250 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-06
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWR  GSLSR+L+S+ R SSLRSSP+ PR+R PPL A PRLQ+RRL+F+  R
Sbjct: 1  MAWR--GSLSRSLMSTARASSLRSSPAAPRVRPPPLAA-PRLQTRRLSFTNPR 50

[Close]
BLAST of CmaCh16G003380.1 vs. TrEMBL
Match: A0A067L7P6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16275 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-06
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSR L+S+ R  S  SS  LPR+R PP TA PRLQSRR++F  SR
Sbjct: 1  MAWRSSGSLSRTLMSAARAPSRISSSPLPRIR-PPATASPRLQSRRVSFGPSR 52

[Close]
BLAST of CmaCh16G003380.1 vs. NCBI nr
Match: gi|700202358|gb|KGN57491.1| (hypothetical protein Csa_3G199040 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109

[Close]
BLAST of CmaCh16G003380.1 vs. NCBI nr
Match: gi|449445920|ref|XP_004140720.1| (PREDICTED: uncharacterized protein LOC101202763 isoform X1 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 50  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

[Close]
BLAST of CmaCh16G003380.1 vs. NCBI nr
Match: gi|449445922|ref|XP_004140721.1| (PREDICTED: uncharacterized protein LOC101202763 isoform X2 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 50  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

[Close]
BLAST of CmaCh16G003380.1 vs. NCBI nr
Match: gi|449445924|ref|XP_004140722.1| (PREDICTED: uncharacterized protein LOC101202763 isoform X3 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 50  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

[Close]
BLAST of CmaCh16G003380.1 vs. NCBI nr
Match: gi|1009150062|ref|XP_015892814.1| (PREDICTED: uncharacterized protein LOC107426996 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLP-PLTARPRLQSRRLAFSTSR 54
          MAWRS+GSLSR+L+S+ R S LRS P LPRLR P P  A PRLQSRRL+F+  R
Sbjct: 1  MAWRSAGSLSRSLVSTARVSLLRSPPPLPRLRPPAPNMAAPRLQSRRLSFAAPR 54

The following BLAST results are available for this feature:
BLAST of CmaCh16G003380.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G003380.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV2_CUCSA9.3e-1177.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199040 PE=4 SV=1[more]
A0A0D2NHH7_GOSRA1.1e-0664.15Uncharacterized protein OS=Gossypium raimondii GN=B456_005G234400 PE=4 SV=1[more]
A0A0B0PFR0_GOSAR1.1e-0664.15Caspase-6 OS=Gossypium arboreum GN=F383_28660 PE=4 SV=1[more]
F6H6A0_VITVI4.0e-0666.04Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00250 PE=4 SV=... [more]
A0A067L7P6_JATCU4.0e-0666.04Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16275 PE=4 SV=1[more]
BLAST of CmaCh16G003380.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh16G003380.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202358|gb|KGN57491.1|1.3e-1077.36hypothetical protein Csa_3G199040 [Cucumis sativus][more]
gi|449445920|ref|XP_004140720.1|1.3e-1077.36PREDICTED: uncharacterized protein LOC101202763 isoform X1 [Cucumis sativus][more]
gi|449445922|ref|XP_004140721.1|1.3e-1077.36PREDICTED: uncharacterized protein LOC101202763 isoform X2 [Cucumis sativus][more]
gi|449445924|ref|XP_004140722.1|1.3e-1077.36PREDICTED: uncharacterized protein LOC101202763 isoform X3 [Cucumis sativus][more]
gi|1009150062|ref|XP_015892814.1|8.9e-0766.67PREDICTED: uncharacterized protein LOC107426996 isoform X2 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh16G003380CmaCh16G003380gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh16G003380.1CmaCh16G003380.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G003380.1.CDS.3CmaCh16G003380.1.CDS.3CDS
CmaCh16G003380.1.CDS.2CmaCh16G003380.1.CDS.2CDS
CmaCh16G003380.1.CDS.1CmaCh16G003380.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G003380.1.exon.3CmaCh16G003380.1.exon.3exon
CmaCh16G003380.1.exon.2CmaCh16G003380.1.exon.2exon
CmaCh16G003380.1.exon.1CmaCh16G003380.1.exon.1exon