CmaCh16G003380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G003380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 1587269 .. 1587995 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGTACTTCATAAGTTTCGAAACTCGCTGCTTGGTTTCCTTTCGAAACGAATTGATGAACGAATTACGGAGGAATAAATTCCGTTGAATTGTGATTTATTTGATGCTCGATGTTCGTTCTTTTTTCCGTGTTGATCTCTGTTTACTATTGATTTCGGCTTCTGTAAATTTAAAATCATCTGGAGATTGAATTTCTGTTGTTTATGTTTTTATCTTAATTTCAGATTAATTTTCATGCATTTTAAAGTTTTTGTTATCTGTCAAGCTATTTGTGATTGCATTGTAAAAGAGTTGCATAAATCTTGTTGGCAATTATCCTTTACATTCCGACGCAACACTAGACTCAACCATTTCAGAATTATCACCGCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGTTAATCACACGAACAGAAACCCCACCAATATTTTCAGAGTCTTCCCTATTCCATCTGTTTTAAGAAAAATTTCTCACATTATTACTTATGATCTTTTCTCTCTCTTGATCATCTTTGATTGGAAGGCTCTTTTCTGA

mRNA sequence

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGCTCTTTTCTGA

Coding sequence (CDS)

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGCTCTTTTCTGA

Protein sequence

MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRKQPIKFLIILIKAFSTLLSSKALF
Homology
[Close]
BLAST of CmaCh16G003380 vs. TrEMBL
Match: A0A0A0LBV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199040 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.3e-11
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109

[Close]
BLAST of CmaCh16G003380 vs. TrEMBL
Match: A0A0D2NHH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G234400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRS+GSLSR++IS+ R  SLRS P LPRLR P +++ PRLQSRRL+++ SR
Sbjct: 1  MAWRSAGSLSRSVISAARAPSLRSPPPLPRLR-PSVSSAPRLQSRRLSYAPSR 52

[Close]
BLAST of CmaCh16G003380 vs. TrEMBL
Match: A0A0B0PFR0_GOSAR (Caspase-6 OS=Gossypium arboreum GN=F383_28660 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRS+GSLSR++IS+ R  SLRS P LPRLR P +++ PRLQSRRL+++ SR
Sbjct: 46 MAWRSAGSLSRSVISAARAPSLRSPPPLPRLR-PSVSSAPRLQSRRLSYAPSR 97

[Close]
BLAST of CmaCh16G003380 vs. TrEMBL
Match: F6H6A0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00250 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-06
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWR  GSLSR+L+S+ R SSLRSSP+ PR+R PPL A PRLQ+RRL+F+  R
Sbjct: 1  MAWR--GSLSRSLMSTARASSLRSSPAAPRVRPPPLAA-PRLQTRRLSFTNPR 50

[Close]
BLAST of CmaCh16G003380 vs. TrEMBL
Match: A0A067L7P6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16275 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-06
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSR L+S+ R  S  SS  LPR+R PP TA PRLQSRR++F  SR
Sbjct: 1  MAWRSSGSLSRTLMSAARAPSRISSSPLPRIR-PPATASPRLQSRRVSFGPSR 52

[Close]
BLAST of CmaCh16G003380 vs. NCBI nr
Match: gi|700202358|gb|KGN57491.1| (hypothetical protein Csa_3G199040 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109

[Close]
BLAST of CmaCh16G003380 vs. NCBI nr
Match: gi|449445920|ref|XP_004140720.1| (PREDICTED: uncharacterized protein LOC101202763 isoform X1 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 50  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

[Close]
BLAST of CmaCh16G003380 vs. NCBI nr
Match: gi|449445922|ref|XP_004140721.1| (PREDICTED: uncharacterized protein LOC101202763 isoform X2 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 50  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

[Close]
BLAST of CmaCh16G003380 vs. NCBI nr
Match: gi|449445924|ref|XP_004140722.1| (PREDICTED: uncharacterized protein LOC101202763 isoform X3 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
           MAWRSSGSLSR+LIS++R SSLRS+PSLPRLR PPL +RP LQSRR +FS SR
Sbjct: 50  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

[Close]
BLAST of CmaCh16G003380 vs. NCBI nr
Match: gi|1009150062|ref|XP_015892814.1| (PREDICTED: uncharacterized protein LOC107426996 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLP-PLTARPRLQSRRLAFSTSR 54
          MAWRS+GSLSR+L+S+ R S LRS P LPRLR P P  A PRLQSRRL+F+  R
Sbjct: 1  MAWRSAGSLSRSLVSTARVSLLRSPPPLPRLRPPAPNMAAPRLQSRRLSFAAPR 54

The following BLAST results are available for this feature:
BLAST of CmaCh16G003380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G003380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV2_CUCSA9.3e-1177.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199040 PE=4 SV=1[more]
A0A0D2NHH7_GOSRA1.1e-0664.15Uncharacterized protein OS=Gossypium raimondii GN=B456_005G234400 PE=4 SV=1[more]
A0A0B0PFR0_GOSAR1.1e-0664.15Caspase-6 OS=Gossypium arboreum GN=F383_28660 PE=4 SV=1[more]
F6H6A0_VITVI4.0e-0666.04Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00250 PE=4 SV=... [more]
A0A067L7P6_JATCU4.0e-0666.04Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16275 PE=4 SV=1[more]
BLAST of CmaCh16G003380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh16G003380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202358|gb|KGN57491.1|1.3e-1077.36hypothetical protein Csa_3G199040 [Cucumis sativus][more]
gi|449445920|ref|XP_004140720.1|1.3e-1077.36PREDICTED: uncharacterized protein LOC101202763 isoform X1 [Cucumis sativus][more]
gi|449445922|ref|XP_004140721.1|1.3e-1077.36PREDICTED: uncharacterized protein LOC101202763 isoform X2 [Cucumis sativus][more]
gi|449445924|ref|XP_004140722.1|1.3e-1077.36PREDICTED: uncharacterized protein LOC101202763 isoform X3 [Cucumis sativus][more]
gi|1009150062|ref|XP_015892814.1|8.9e-0766.67PREDICTED: uncharacterized protein LOC107426996 isoform X2 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G003380.1CmaCh16G003380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G003380Carg08138Silver-seed gourdcarcmaB0526
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G003380Cucumber (Chinese Long) v3cmacucB0397
CmaCh16G003380Cucumber (Chinese Long) v3cmacucB0373
CmaCh16G003380Cucumber (Chinese Long) v3cmacucB0413
CmaCh16G003380Cucumber (Chinese Long) v3cmacucB0414
CmaCh16G003380Watermelon (97103) v2cmawmbB342
CmaCh16G003380Watermelon (97103) v2cmawmbB347
CmaCh16G003380Watermelon (97103) v2cmawmbB348
CmaCh16G003380Wax gourdcmawgoB0446
CmaCh16G003380Wax gourdcmawgoB0438
CmaCh16G003380Wax gourdcmawgoB0452
CmaCh16G003380Cucurbita maxima (Rimu)cmacmaB042
CmaCh16G003380Cucurbita maxima (Rimu)cmacmaB135
CmaCh16G003380Cucurbita maxima (Rimu)cmacmaB340
CmaCh16G003380Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G003380Cucumber (Gy14) v1cgycmaB0226
CmaCh16G003380Cucumber (Gy14) v1cgycmaB0623
CmaCh16G003380Cucurbita moschata (Rifu)cmacmoB318
CmaCh16G003380Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G003380Cucurbita moschata (Rifu)cmacmoB329
CmaCh16G003380Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G003380Wild cucumber (PI 183967)cmacpiB326
CmaCh16G003380Wild cucumber (PI 183967)cmacpiB351
CmaCh16G003380Cucumber (Chinese Long) v2cmacuB320
CmaCh16G003380Cucumber (Chinese Long) v2cmacuB341
CmaCh16G003380Cucumber (Chinese Long) v2cmacuB347
CmaCh16G003380Cucumber (Chinese Long) v2cmacuB348
CmaCh16G003380Melon (DHL92) v3.5.1cmameB287
CmaCh16G003380Melon (DHL92) v3.5.1cmameB298
CmaCh16G003380Melon (DHL92) v3.5.1cmameB311
CmaCh16G003380Watermelon (Charleston Gray)cmawcgB293
CmaCh16G003380Watermelon (Charleston Gray)cmawcgB297
CmaCh16G003380Watermelon (97103) v1cmawmB317
CmaCh16G003380Watermelon (97103) v1cmawmB324
CmaCh16G003380Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G003380Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G003380Bottle gourd (USVL1VR-Ls)cmalsiB310
CmaCh16G003380Bottle gourd (USVL1VR-Ls)cmalsiB309
CmaCh16G003380Bottle gourd (USVL1VR-Ls)cmalsiB304
CmaCh16G003380Bottle gourd (USVL1VR-Ls)cmalsiB316
CmaCh16G003380Cucumber (Gy14) v2cgybcmaB332
CmaCh16G003380Cucumber (Gy14) v2cgybcmaB750
CmaCh16G003380Melon (DHL92) v3.6.1cmamedB331
CmaCh16G003380Melon (DHL92) v3.6.1cmamedB346
CmaCh16G003380Melon (DHL92) v3.6.1cmamedB353
CmaCh16G003380Melon (DHL92) v3.6.1cmamedB363
CmaCh16G003380Silver-seed gourdcarcmaB0406