CmaCh14G017560.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G017560.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr14 : 12804664 .. 12806308 (-)
Sequence length312
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTAATGAAGGTAAAAACAGAAAAGGGGAGAAAGTAGAGGGAAAGAGAGAAGACCATGGGAAGGGAGCGTTAGAAGGGGGAAAGAAACAGCAGGGGAAGGGGTGAAGAGTTGAGGAATTGAGGTAGACGCCATGAGAGTGTAGTTAGCTACCTTAAAAAGATTGATTTTTTAGGGGGGCTTTACCAATTAACAATTGCATAGGGAAAAGGGTCTCAACAAAATTGAAAAGAGAAAGAGAAGGAGAGAGAAGAGGAAGCAGAGCAGGAGAGAGGACTGCAAGTTCGAATTATTCTTCTTCTGTGTATGATTGCTTTTATAAATACTCAGTAGTCTCTTTTGGACTCTCTTTCTCTCTCTAATGCCCTTTAATTTATGGTATGTGGTACGTCCCCGAGGCTGCGCGATCAGAACAGAACCGAATTGGAGGATAGAGAAACAGAGTAATTTTTTTTAAGGGAAAGAGAAAGGATGGATGGTGTGGGGGGGCAGGGGCCTCTTAACCCTTTTACACGTGATAAAGAAAACACCAAAAGCCTCCTTGCATGCGTGTATAAAGCTTCTTCTTCATCATCATCTCTCTTTCTCCACGCCCTTTCTCTTCTTCTCCTCCTCCTTCTCCTTCTTCTTCTTCTTTCACATTAACCCCATTTACCTCTGTTTTTCTGTCTTGTTTTTGGGTTCTTCGAGTTTTGAAACCTCGCTGCTTGATTGGATTTGAGTGGATTGGATTGGATTGATGTTGGGTGAGTGTTTTTTTTGAGTGTTTTTGTGTTCTGAAATTCTGGGTTTCTTCCTCTTCTTCACTGGTTCTTCTCGCGGGCATTGAATGGGCCCTGCCCTTTTTTACATCATTAAATCTTTGGGCATCGGATGGATAGTGATTTTACTACCCTTTTCAATGTTTATTCCTTGTCTTTGGATTTGTTCTTGATTTTTGTTTTCTTCTGGATGTTTGTATGCTGTCTCTGCCACTTCCCCGACTTCCATATCTTCCTCTTCCTTTTAATACCATTTCGTGTTTCTTTTATATATACTCCTCTTGCGTTTGTATCTGCTTGGGTTTACTCATCATCCCCATCGAGATTTTCGTTTCTAATAGACAGACAGGACTATGGAAACTGGGTTTGTCTTATGGGTATTCCCGCTCTGGGTTTCCACACGGTTTATTTTTTGTCTTGCCTTAATGGAAATTTGGTTCCAGGTTTGGACGCTGGGCTGCCAAACAAGATCTGGGTTTTGAAATTTGGTTTACATTTTTTGGACTCTTCTCCTTGCATTTAGGATGGGGTTTTTTATGGGTGTGTTTGAAATGAAACTTTTGTTTGGTTGAATTTCTTCGAACATGTTTTCTTCAGGGATATATATATGCTGAAACGATGGTTTTACAATTTTGGGGGGTTTTGTATTTTAAACAAAGGAATAGTAATCCTTGTAAATGTAGAAGAAACGGCCAAAGTTTTATCCCGCTTTAACCTTTACTTTGCGTATGAAACAATGAATGTATTTCTCTGTATCATTGTCTCTGTTGTTTTAACCTTTTGAAGAATTTTTCGTCATATTTTTGCTGACATGCAATTTTCCTCTTATGGGTTCATTTTTTTTTCCCCTCCGCAGTGGGATGACGTCTTCAATCCGTGA

mRNA sequence

ATGGATTCTAATGAAGGGAAAGAGAAAGGATGGATGGTGTGGGGGGGCAGGGGCCTCTTAACCCTTTTACACGTGATAAAGAAAACACCAAAAGCCTCCTTGCATGCGTGTATAAAGCTTCTTCTTCATCATCATCTCTCTTTCTCCACGCCCTTTCTCTTCTTCTCCTCCTCCTTCTCCTTCTTCTTCTTCTTTCACATTAACCCCATTTACCTCTGTTTTTCTGTCTTACAGGACTATGGAAACTGGGTTTGTCTTATGGGTATTCCCGCTCTGGGTTTCCACACGTGGGATGACGTCTTCAATCCGTGA

Coding sequence (CDS)

ATGGATTCTAATGAAGGGAAAGAGAAAGGATGGATGGTGTGGGGGGGCAGGGGCCTCTTAACCCTTTTACACGTGATAAAGAAAACACCAAAAGCCTCCTTGCATGCGTGTATAAAGCTTCTTCTTCATCATCATCTCTCTTTCTCCACGCCCTTTCTCTTCTTCTCCTCCTCCTTCTCCTTCTTCTTCTTCTTTCACATTAACCCCATTTACCTCTGTTTTTCTGTCTTACAGGACTATGGAAACTGGGTTTGTCTTATGGGTATTCCCGCTCTGGGTTTCCACACGTGGGATGACGTCTTCAATCCGTGA

Protein sequence

MDSNEGKEKGWMVWGGRGLLTLLHVIKKTPKASLHACIKLLLHHHLSFSTPFLFFSSSFSFFFFFHINPIYLCFSVLQDYGNWVCLMGIPALGFHTWDDVFNP
Homology
[Close]
BLAST of CmaCh14G017560.1 vs. TrEMBL
Match: A0A0A0L7C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144730 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-10
Identity = 53/125 (42.40%), Postives = 63/125 (50.40%), Query Frame = 1 

Query: 12  MVWGGRGLLTLLHVIKKTPKASLHACIKLLLHHHLSFSTPFLFFSSSFS----------- 71
           +++G   L +LLHVIKKTPKA+LHACIKLLLHHHLSFST F   SSS S           
Sbjct: 4   LIYGMWVLTSLLHVIKKTPKATLHACIKLLLHHHLSFSTLFSSSSSSSSSSSSSSSSSSS 63

Query: 72  -------------------FFFFFH--INPIYLCFSVLQDYGNWVCLMGIPALGFHTW-D 104
                              F FF H     ++ CF V   +G   CL+G+    F  W D
Sbjct: 64  FSNLSHIKPPLNPLFALPFFTFFTHFLFYSLFFCF-VCSSFGTSHCLIGLVWFWFWFWQD 123

[Close]
BLAST of CmaCh14G017560.1 vs. NCBI nr
Match: gi|700201801|gb|KGN56934.1| (hypothetical protein Csa_3G144730 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-10
Identity = 53/125 (42.40%), Postives = 63/125 (50.40%), Query Frame = 1 

Query: 12  MVWGGRGLLTLLHVIKKTPKASLHACIKLLLHHHLSFSTPFLFFSSSFS----------- 71
           +++G   L +LLHVIKKTPKA+LHACIKLLLHHHLSFST F   SSS S           
Sbjct: 4   LIYGMWVLTSLLHVIKKTPKATLHACIKLLLHHHLSFSTLFSSSSSSSSSSSSSSSSSSS 63

Query: 72  -------------------FFFFFH--INPIYLCFSVLQDYGNWVCLMGIPALGFHTW-D 104
                              F FF H     ++ CF V   +G   CL+G+    F  W D
Sbjct: 64  FSNLSHIKPPLNPLFALPFFTFFTHFLFYSLFFCF-VCSSFGTSHCLIGLVWFWFWFWQD 123

The following BLAST results are available for this feature:
BLAST of CmaCh14G017560.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G017560.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7C9_CUCSA6.2e-1042.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144730 PE=4 SV=1[more]
BLAST of CmaCh14G017560.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G017560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201801|gb|KGN56934.1|8.9e-1042.40hypothetical protein Csa_3G144730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh14G017560CmaCh14G017560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh14G017560.1CmaCh14G017560.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh14G017560.1.CDS.4CmaCh14G017560.1.CDS.4CDS
CmaCh14G017560.1.CDS.3CmaCh14G017560.1.CDS.3CDS
CmaCh14G017560.1.CDS.2CmaCh14G017560.1.CDS.2CDS
CmaCh14G017560.1.CDS.1CmaCh14G017560.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh14G017560.1.exon.4CmaCh14G017560.1.exon.4exon
CmaCh14G017560.1.exon.3CmaCh14G017560.1.exon.3exon
CmaCh14G017560.1.exon.2CmaCh14G017560.1.exon.2exon
CmaCh14G017560.1.exon.1CmaCh14G017560.1.exon.1exon