CmaCh14G017560 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G017560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr14 : 12804664 .. 12806308 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTAATGAAGGTAAAAACAGAAAAGGGGAGAAAGTAGAGGGAAAGAGAGAAGACCATGGGAAGGGAGCGTTAGAAGGGGGAAAGAAACAGCAGGGGAAGGGGTGAAGAGTTGAGGAATTGAGGTAGACGCCATGAGAGTGTAGTTAGCTACCTTAAAAAGATTGATTTTTTAGGGGGGCTTTACCAATTAACAATTGCATAGGGAAAAGGGTCTCAACAAAATTGAAAAGAGAAAGAGAAGGAGAGAGAAGAGGAAGCAGAGCAGGAGAGAGGACTGCAAGTTCGAATTATTCTTCTTCTGTGTATGATTGCTTTTATAAATACTCAGTAGTCTCTTTTGGACTCTCTTTCTCTCTCTAATGCCCTTTAATTTATGGTATGTGGTACGTCCCCGAGGCTGCGCGATCAGAACAGAACCGAATTGGAGGATAGAGAAACAGAGTAATTTTTTTTAAGGGAAAGAGAAAGGATGGATGGTGTGGGGGGGCAGGGGCCTCTTAACCCTTTTACACGTGATAAAGAAAACACCAAAAGCCTCCTTGCATGCGTGTATAAAGCTTCTTCTTCATCATCATCTCTCTTTCTCCACGCCCTTTCTCTTCTTCTCCTCCTCCTTCTCCTTCTTCTTCTTCTTTCACATTAACCCCATTTACCTCTGTTTTTCTGTCTTGTTTTTGGGTTCTTCGAGTTTTGAAACCTCGCTGCTTGATTGGATTTGAGTGGATTGGATTGGATTGATGTTGGGTGAGTGTTTTTTTTGAGTGTTTTTGTGTTCTGAAATTCTGGGTTTCTTCCTCTTCTTCACTGGTTCTTCTCGCGGGCATTGAATGGGCCCTGCCCTTTTTTACATCATTAAATCTTTGGGCATCGGATGGATAGTGATTTTACTACCCTTTTCAATGTTTATTCCTTGTCTTTGGATTTGTTCTTGATTTTTGTTTTCTTCTGGATGTTTGTATGCTGTCTCTGCCACTTCCCCGACTTCCATATCTTCCTCTTCCTTTTAATACCATTTCGTGTTTCTTTTATATATACTCCTCTTGCGTTTGTATCTGCTTGGGTTTACTCATCATCCCCATCGAGATTTTCGTTTCTAATAGACAGACAGGACTATGGAAACTGGGTTTGTCTTATGGGTATTCCCGCTCTGGGTTTCCACACGGTTTATTTTTTGTCTTGCCTTAATGGAAATTTGGTTCCAGGTTTGGACGCTGGGCTGCCAAACAAGATCTGGGTTTTGAAATTTGGTTTACATTTTTTGGACTCTTCTCCTTGCATTTAGGATGGGGTTTTTTATGGGTGTGTTTGAAATGAAACTTTTGTTTGGTTGAATTTCTTCGAACATGTTTTCTTCAGGGATATATATATGCTGAAACGATGGTTTTACAATTTTGGGGGGTTTTGTATTTTAAACAAAGGAATAGTAATCCTTGTAAATGTAGAAGAAACGGCCAAAGTTTTATCCCGCTTTAACCTTTACTTTGCGTATGAAACAATGAATGTATTTCTCTGTATCATTGTCTCTGTTGTTTTAACCTTTTGAAGAATTTTTCGTCATATTTTTGCTGACATGCAATTTTCCTCTTATGGGTTCATTTTTTTTTCCCCTCCGCAGTGGGATGACGTCTTCAATCCGTGA

mRNA sequence

ATGGATTCTAATGAAGGGAAAGAGAAAGGATGGATGGTGTGGGGGGGCAGGGGCCTCTTAACCCTTTTACACGTGATAAAGAAAACACCAAAAGCCTCCTTGCATGCGTGTATAAAGCTTCTTCTTCATCATCATCTCTCTTTCTCCACGCCCTTTCTCTTCTTCTCCTCCTCCTTCTCCTTCTTCTTCTTCTTTCACATTAACCCCATTTACCTCTGTTTTTCTGTCTTACAGGACTATGGAAACTGGGTTTGTCTTATGGGTATTCCCGCTCTGGGTTTCCACACGTGGGATGACGTCTTCAATCCGTGA

Coding sequence (CDS)

ATGGATTCTAATGAAGGGAAAGAGAAAGGATGGATGGTGTGGGGGGGCAGGGGCCTCTTAACCCTTTTACACGTGATAAAGAAAACACCAAAAGCCTCCTTGCATGCGTGTATAAAGCTTCTTCTTCATCATCATCTCTCTTTCTCCACGCCCTTTCTCTTCTTCTCCTCCTCCTTCTCCTTCTTCTTCTTCTTTCACATTAACCCCATTTACCTCTGTTTTTCTGTCTTACAGGACTATGGAAACTGGGTTTGTCTTATGGGTATTCCCGCTCTGGGTTTCCACACGTGGGATGACGTCTTCAATCCGTGA

Protein sequence

MDSNEGKEKGWMVWGGRGLLTLLHVIKKTPKASLHACIKLLLHHHLSFSTPFLFFSSSFSFFFFFHINPIYLCFSVLQDYGNWVCLMGIPALGFHTWDDVFNP
Homology
[Close]
BLAST of CmaCh14G017560 vs. TrEMBL
Match: A0A0A0L7C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144730 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-10
Identity = 53/125 (42.40%), Postives = 63/125 (50.40%), Query Frame = 1 

Query: 12  MVWGGRGLLTLLHVIKKTPKASLHACIKLLLHHHLSFSTPFLFFSSSFS----------- 71
           +++G   L +LLHVIKKTPKA+LHACIKLLLHHHLSFST F   SSS S           
Sbjct: 4   LIYGMWVLTSLLHVIKKTPKATLHACIKLLLHHHLSFSTLFSSSSSSSSSSSSSSSSSSS 63

Query: 72  -------------------FFFFFH--INPIYLCFSVLQDYGNWVCLMGIPALGFHTW-D 104
                              F FF H     ++ CF V   +G   CL+G+    F  W D
Sbjct: 64  FSNLSHIKPPLNPLFALPFFTFFTHFLFYSLFFCF-VCSSFGTSHCLIGLVWFWFWFWQD 123

[Close]
BLAST of CmaCh14G017560 vs. NCBI nr
Match: gi|700201801|gb|KGN56934.1| (hypothetical protein Csa_3G144730 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-10
Identity = 53/125 (42.40%), Postives = 63/125 (50.40%), Query Frame = 1 

Query: 12  MVWGGRGLLTLLHVIKKTPKASLHACIKLLLHHHLSFSTPFLFFSSSFS----------- 71
           +++G   L +LLHVIKKTPKA+LHACIKLLLHHHLSFST F   SSS S           
Sbjct: 4   LIYGMWVLTSLLHVIKKTPKATLHACIKLLLHHHLSFSTLFSSSSSSSSSSSSSSSSSSS 63

Query: 72  -------------------FFFFFH--INPIYLCFSVLQDYGNWVCLMGIPALGFHTW-D 104
                              F FF H     ++ CF V   +G   CL+G+    F  W D
Sbjct: 64  FSNLSHIKPPLNPLFALPFFTFFTHFLFYSLFFCF-VCSSFGTSHCLIGLVWFWFWFWQD 123

The following BLAST results are available for this feature:
BLAST of CmaCh14G017560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G017560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7C9_CUCSA6.2e-1042.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144730 PE=4 SV=1[more]
BLAST of CmaCh14G017560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G017560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201801|gb|KGN56934.1|8.9e-1042.40hypothetical protein Csa_3G144730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G017560.1CmaCh14G017560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh14G017560CmoCh14G017950Cucurbita moschata (Rifu)cmacmoB245
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G017560Melon (DHL92) v3.6.1cmamedB267
CmaCh14G017560Melon (DHL92) v3.6.1cmamedB273
CmaCh14G017560Silver-seed gourdcarcmaB0313
CmaCh14G017560Silver-seed gourdcarcmaB0325
CmaCh14G017560Silver-seed gourdcarcmaB0453
CmaCh14G017560Silver-seed gourdcarcmaB1075
CmaCh14G017560Silver-seed gourdcarcmaB1320
CmaCh14G017560Cucumber (Chinese Long) v3cmacucB0277
CmaCh14G017560Cucumber (Chinese Long) v3cmacucB0278
CmaCh14G017560Cucumber (Chinese Long) v3cmacucB0291
CmaCh14G017560Watermelon (97103) v2cmawmbB263
CmaCh14G017560Watermelon (97103) v2cmawmbB266
CmaCh14G017560Watermelon (97103) v2cmawmbB273
CmaCh14G017560Wax gourdcmawgoB0310
CmaCh14G017560Wax gourdcmawgoB0328
CmaCh14G017560Wax gourdcmawgoB0344
CmaCh14G017560Cucurbita maxima (Rimu)cmacmaB249
CmaCh14G017560Cucurbita maxima (Rimu)cmacmaB260
CmaCh14G017560Cucurbita maxima (Rimu)cmacmaB267
CmaCh14G017560Cucurbita maxima (Rimu)cmacmaB284
CmaCh14G017560Cucurbita maxima (Rimu)cmacmaB296
CmaCh14G017560Cucumber (Gy14) v1cgycmaB0709
CmaCh14G017560Cucumber (Gy14) v1cgycmaB1073
CmaCh14G017560Cucurbita moschata (Rifu)cmacmoB251
CmaCh14G017560Cucurbita moschata (Rifu)cmacmoB271
CmaCh14G017560Cucurbita moschata (Rifu)cmacmoB279
CmaCh14G017560Wild cucumber (PI 183967)cmacpiB240
CmaCh14G017560Wild cucumber (PI 183967)cmacpiB255
CmaCh14G017560Cucumber (Chinese Long) v2cmacuB238
CmaCh14G017560Cucumber (Chinese Long) v2cmacuB253
CmaCh14G017560Melon (DHL92) v3.5.1cmameB235
CmaCh14G017560Melon (DHL92) v3.5.1cmameB242
CmaCh14G017560Watermelon (Charleston Gray)cmawcgB233
CmaCh14G017560Watermelon (Charleston Gray)cmawcgB235
CmaCh14G017560Watermelon (Charleston Gray)cmawcgB240
CmaCh14G017560Watermelon (97103) v1cmawmB242
CmaCh14G017560Watermelon (97103) v1cmawmB236
CmaCh14G017560Watermelon (97103) v1cmawmB250
CmaCh14G017560Cucurbita pepo (Zucchini)cmacpeB259
CmaCh14G017560Cucurbita pepo (Zucchini)cmacpeB266
CmaCh14G017560Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G017560Cucurbita pepo (Zucchini)cmacpeB290
CmaCh14G017560Cucurbita pepo (Zucchini)cmacpeB292
CmaCh14G017560Bottle gourd (USVL1VR-Ls)cmalsiB225
CmaCh14G017560Bottle gourd (USVL1VR-Ls)cmalsiB245
CmaCh14G017560Bottle gourd (USVL1VR-Ls)cmalsiB247
CmaCh14G017560Cucumber (Gy14) v2cgybcmaB188
CmaCh14G017560Cucumber (Gy14) v2cgybcmaB318