CmaCh14G015080.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G015080.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Lipid transfer protein
Location	Cma_Chr14 : 11417295 .. 11417588 (-)
Sequence length	294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTGTGGCTGTGGCTTTGGCATTGCTTTTGATGGCTATGATTGGTTTGGGTGAAGCTCAAACCATATGCAACATGTCATTTCCTGATATATATTCATGTAGTTCATCGGTGATACCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCAACTTGACATGCTTATGCAACTACCAAAAAGCTGGAGCTTTTTCTTATCTTGGCATTGACCCTAATCTTGCCTTGCAGCTGCCTAATAAGTGCAACATTCCTAACCCTCCAACTTGTTAG

mRNA sequence

ATGAAGGCTGTGGCTGTGGCTTTGGCATTGCTTTTGATGGCTATGATTGGTTTGGGTGAAGCTCAAACCATATGCAACATGTCATTTCCTGATATATATTCATGTAGTTCATCGGTGATACCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCAACTTGACATGCTTATGCAACTACCAAAAAGCTGGAGCTTTTTCTTATCTTGGCATTGACCCTAATCTTGCCTTGCAGCTGCCTAATAAGTGCAACATTCCTAACCCTCCAACTTGTTAG

Coding sequence (CDS)

ATGAAGGCTGTGGCTGTGGCTTTGGCATTGCTTTTGATGGCTATGATTGGTTTGGGTGAAGCTCAAACCATATGCAACATGTCATTTCCTGATATATATTCATGTAGTTCATCGGTGATACCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCAACTTGACATGCTTATGCAACTACCAAAAAGCTGGAGCTTTTTCTTATCTTGGCATTGACCCTAATCTTGCCTTGCAGCTGCCTAATAAGTGCAACATTCCTAACCCTCCAACTTGTTAG

Protein sequence

MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC

Homology

[Close]

BLAST of CmaCh14G015080.1 vs. Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.5e-14
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 4   VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
           V +A+ +++  ++    A  +C MS  ++  C  +V   NPT P+  CCTAL HA+  CL
Sbjct: 9   VMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACL 68

Query: 64  CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           C Y+ +      G+DP LA  LP +C + N PTC
Sbjct: 69  CGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of CmaCh14G015080.1 vs. TrEMBL
Match: A0A0A0KZ41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017140 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK VA+AL L+++  IG GEAQ+ICNM    +Y+C  SV PPNPTPPT QCC+AL+HA+L
Sbjct: 5   MKVVALALVLMVVNNIGFGEAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

[Close]

BLAST of CmaCh14G015080.1 vs. TrEMBL
Match: A0A0A1IXE5_CUCSA (Lipid binding/ Lipid transporter protein OS=Cucumis sativus GN=LBP PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK VA+AL L+++  IG G+AQ+ICNM    +Y+C  SV PPNPTPPT QCC+AL+HA+L
Sbjct: 5   MKVVALALVLMVVNNIGFGKAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

[Close]

BLAST of CmaCh14G015080.1 vs. TrEMBL
Match: A0A151QT21_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_045738 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-22
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 4   VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
           V V + + L+  IG+ + QTICN+S  D   C SS+ PPNPTPP+  CC  +SHA+L CL
Sbjct: 7   VIVIVVMALVISIGITKGQTICNISLEDALKCKSSMTPPNPTPPSKDCCDVVSHADLPCL 66

Query: 64  CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           C Y+ +     LGIDPNLALQLP KCNIPNPP C
Sbjct: 67  CPYKNSPLLPSLGIDPNLALQLPAKCNIPNPPKC 100

[Close]

BLAST of CmaCh14G015080.1 vs. TrEMBL
Match: K7N5J7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G248700 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 2   KAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLT 61
           K + V +AL++  ++   + Q+ICN+S PD+ +C  +V PPNPTPP+ QCC+ LSHA+L 
Sbjct: 6   KQMIVGVALVVFLLLISVKGQSICNVSLPDLMTCKPAVTPPNPTPPSQQCCSVLSHADLP 65

Query: 62  CLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           CLC+Y+ +     LGIDP LALQLP KCN+P+PP C
Sbjct: 66  CLCSYKNSPLLPSLGIDPKLALQLPAKCNLPHPPNC 101

[Close]

BLAST of CmaCh14G015080.1 vs. TrEMBL
Match: A0A0B2R054_GLYSO (Putative lipid-transfer protein DIR1 OS=Glycine soja GN=glysoja_032913 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 1


Query: 4  VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
          VA+ + LLL+++ G    Q+ICN+S PD+ +C  +V PPNPTPP+ QCC+ LSHA+L CL
Sbjct: 5  VALVVFLLLISVKG----QSICNVSLPDLMTCKPAVTPPNPTPPSQQCCSVLSHADLPCL 64

Query: 64 CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
          C+Y+ +     LGIDP LALQLP KCN+P+PP C
Sbjct: 65 CSYKNSPLLPSLGIDPKLALQLPAKCNLPHPPNC 94

[Close]

BLAST of CmaCh14G015080.1 vs. TAIR10
Match: AT5G48485.1 (AT5G48485.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 5.4e-15
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 4   VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
           V +A+ +++  ++    A  +C MS  ++  C  +V   NPT P+  CCTAL HA+  CL
Sbjct: 9   VMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACL 68

Query: 64  CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           C Y+ +      G+DP LA  LP +C + N PTC
Sbjct: 69  CGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of CmaCh14G015080.1 vs. TAIR10
Match: AT5G48490.1 (AT5G48490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.5e-14
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 2   KAVAVALALLLMAMIGLGEAQTI--CNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHAN 61
           K VA+ + +++MA + +  +  I  C M+  ++  C  +V   NPT P+  CC AL HA+
Sbjct: 4   KKVAIMVIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTSPSLLCCNALKHAD 63

Query: 62  LTCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            TCLC Y+ +      G+DP LA  LP +C++ N PTC
Sbjct: 64  YTCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

[Close]

BLAST of CmaCh14G015080.1 vs. NCBI nr
Match: gi|700197968|gb|KGN53126.1| (hypothetical protein Csa_4G017140 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK VA+AL L+++  IG GEAQ+ICNM    +Y+C  SV PPNPTPPT QCC+AL+HA+L
Sbjct: 5   MKVVALALVLMVVNNIGFGEAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

[Close]

BLAST of CmaCh14G015080.1 vs. NCBI nr
Match: gi|821595415|ref|NP_001295798.1| (lipopolysaccharide-binding protein precursor [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-24
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK VA+AL L+++  IG G+AQ+ICNM    +Y+C  SV PPNPTPPT QCC+AL+HA+L
Sbjct: 5   MKVVALALVLMVVNNIGFGKAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

[Close]

BLAST of CmaCh14G015080.1 vs. NCBI nr
Match: gi|659107927|ref|XP_008453924.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 55/97 (56.70%), Postives = 68/97 (70.10%), Query Frame = 1


Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK V +AL L+++  IG GEAQ+ICNM    +Y+C  +V PPNPT PTAQCC AL  A+L
Sbjct: 5   MKVVVLALVLMVVNNIGFGEAQSICNMPIAGLYACRPAVTPPNPTAPTAQCCMALGQADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GIDPNLA+QLP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGIDPNLAMQLPKRCNISKSPNC 101

[Close]

BLAST of CmaCh14G015080.1 vs. NCBI nr
Match: gi|1012320727|gb|KYP33404.1| (hypothetical protein KK1_045738 [Cajanus cajan])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 4   VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
           V V + + L+  IG+ + QTICN+S  D   C SS+ PPNPTPP+  CC  +SHA+L CL
Sbjct: 7   VIVIVVMALVISIGITKGQTICNISLEDALKCKSSMTPPNPTPPSKDCCDVVSHADLPCL 66

Query: 64  CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           C Y+ +     LGIDPNLALQLP KCNIPNPP C
Sbjct: 67  CPYKNSPLLPSLGIDPNLALQLPAKCNIPNPPKC 100

[Close]

BLAST of CmaCh14G015080.1 vs. NCBI nr
Match: gi|955391388|ref|XP_006606947.2| (PREDICTED: putative lipid-transfer protein DIR1 [Glycine max])

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-22
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 2   KAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLT 61
           K + V +AL++  ++   + Q+ICN+S PD+ +C  +V PPNPTPP+ QCC+ LSHA+L 
Sbjct: 8   KQMIVGVALVVFLLLISVKGQSICNVSLPDLMTCKPAVTPPNPTPPSQQCCSVLSHADLP 67

Query: 62  CLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           CLC+Y+ +     LGIDP LALQLP KCN+P+PP C
Sbjct: 68  CLCSYKNSPLLPSLGIDPKLALQLPAKCNLPHPPNC 103

The following BLAST results are available for this feature:

BLAST of CmaCh14G015080.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DIRL1_ARATH	9.5e-14	37.23	Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1	[more]

BLAST of CmaCh14G015080.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ41_CUCSA	1.1e-24	56.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017140 PE=4 SV=1	[more]
A0A0A1IXE5_CUCSA	3.2e-24	55.67	Lipid binding/ Lipid transporter protein OS=Cucumis sativus GN=LBP PE=2 SV=1	[more]
A0A151QT21_CAJCA	1.0e-22	56.38	Uncharacterized protein OS=Cajanus cajan GN=KK1_045738 PE=4 SV=1	[more]
K7N5J7_SOYBN	3.0e-22	52.08	Uncharacterized protein OS=Glycine max GN=GLYMA_20G248700 PE=4 SV=1	[more]
A0A0B2R054_GLYSO	6.6e-22	55.32	Putative lipid-transfer protein DIR1 OS=Glycine soja GN=glysoja_032913 PE=4 SV=1	[more]

BLAST of CmaCh14G015080.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48485.1	5.4e-15	37.23	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G48490.1	3.5e-14	37.76	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CmaCh14G015080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197968\|gb\|KGN53126.1\|	1.6e-24	56.70	hypothetical protein Csa_4G017140 [Cucumis sativus]	[more]
gi\|821595415\|ref\|NP_001295798.1\|	4.6e-24	55.67	lipopolysaccharide-binding protein precursor [Cucumis sativus]	[more]
gi\|659107927\|ref\|XP_008453924.1\|	1.3e-23	56.70	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo]	[more]
gi\|1012320727\|gb\|KYP33404.1\|	1.5e-22	56.38	hypothetical protein KK1_045738 [Cajanus cajan]	[more]
gi\|955391388\|ref\|XP_006606947.2\|	4.3e-22	52.08	PREDICTED: putative lipid-transfer protein DIR1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh14G015080	CmaCh14G015080	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh14G015080.1	CmaCh14G015080.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G015080.1.CDS.1	CmaCh14G015080.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G015080.1.exon.1	CmaCh14G015080.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 10..97 score: 1.1
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 25..97 score: 1.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 25..96 score: 1.42
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 32..94 score: 2.
None	No IPR available	PANTHER	PTHR33122	FAMILY NOT NAMED	coord: 1..97 score: 8.8
None	No IPR available	PANTHER	PTHR33122:SF5	SUBFAMILY NOT NAMED	coord: 1..97 score: 8.8