CmaCh14G015080 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G015080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLipid transfer protein
LocationCma_Chr14 : 11417295 .. 11417588 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTGTGGCTGTGGCTTTGGCATTGCTTTTGATGGCTATGATTGGTTTGGGTGAAGCTCAAACCATATGCAACATGTCATTTCCTGATATATATTCATGTAGTTCATCGGTGATACCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCAACTTGACATGCTTATGCAACTACCAAAAAGCTGGAGCTTTTTCTTATCTTGGCATTGACCCTAATCTTGCCTTGCAGCTGCCTAATAAGTGCAACATTCCTAACCCTCCAACTTGTTAG

mRNA sequence

ATGAAGGCTGTGGCTGTGGCTTTGGCATTGCTTTTGATGGCTATGATTGGTTTGGGTGAAGCTCAAACCATATGCAACATGTCATTTCCTGATATATATTCATGTAGTTCATCGGTGATACCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCAACTTGACATGCTTATGCAACTACCAAAAAGCTGGAGCTTTTTCTTATCTTGGCATTGACCCTAATCTTGCCTTGCAGCTGCCTAATAAGTGCAACATTCCTAACCCTCCAACTTGTTAG

Coding sequence (CDS)

ATGAAGGCTGTGGCTGTGGCTTTGGCATTGCTTTTGATGGCTATGATTGGTTTGGGTGAAGCTCAAACCATATGCAACATGTCATTTCCTGATATATATTCATGTAGTTCATCGGTGATACCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCAACTTGACATGCTTATGCAACTACCAAAAAGCTGGAGCTTTTTCTTATCTTGGCATTGACCCTAATCTTGCCTTGCAGCTGCCTAATAAGTGCAACATTCCTAACCCTCCAACTTGTTAG

Protein sequence

MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC
Homology
[Close]
BLAST of CmaCh14G015080 vs. Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.5e-14
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 4   VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
           V +A+ +++  ++    A  +C MS  ++  C  +V   NPT P+  CCTAL HA+  CL
Sbjct: 9   VMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACL 68

Query: 64  CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           C Y+ +      G+DP LA  LP +C + N PTC
Sbjct: 69  CGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]
BLAST of CmaCh14G015080 vs. TrEMBL
Match: A0A0A0KZ41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017140 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK VA+AL L+++  IG GEAQ+ICNM    +Y+C  SV PPNPTPPT QCC+AL+HA+L
Sbjct: 5   MKVVALALVLMVVNNIGFGEAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

[Close]
BLAST of CmaCh14G015080 vs. TrEMBL
Match: A0A0A1IXE5_CUCSA (Lipid binding/ Lipid transporter protein OS=Cucumis sativus GN=LBP PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK VA+AL L+++  IG G+AQ+ICNM    +Y+C  SV PPNPTPPT QCC+AL+HA+L
Sbjct: 5   MKVVALALVLMVVNNIGFGKAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

[Close]
BLAST of CmaCh14G015080 vs. TrEMBL
Match: A0A151QT21_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_045738 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-22
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 

Query: 4   VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
           V V + + L+  IG+ + QTICN+S  D   C SS+ PPNPTPP+  CC  +SHA+L CL
Sbjct: 7   VIVIVVMALVISIGITKGQTICNISLEDALKCKSSMTPPNPTPPSKDCCDVVSHADLPCL 66

Query: 64  CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           C Y+ +     LGIDPNLALQLP KCNIPNPP C
Sbjct: 67  CPYKNSPLLPSLGIDPNLALQLPAKCNIPNPPKC 100

[Close]
BLAST of CmaCh14G015080 vs. TrEMBL
Match: K7N5J7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G248700 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 2   KAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLT 61
           K + V +AL++  ++   + Q+ICN+S PD+ +C  +V PPNPTPP+ QCC+ LSHA+L 
Sbjct: 6   KQMIVGVALVVFLLLISVKGQSICNVSLPDLMTCKPAVTPPNPTPPSQQCCSVLSHADLP 65

Query: 62  CLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           CLC+Y+ +     LGIDP LALQLP KCN+P+PP C
Sbjct: 66  CLCSYKNSPLLPSLGIDPKLALQLPAKCNLPHPPNC 101

[Close]
BLAST of CmaCh14G015080 vs. TrEMBL
Match: A0A0B2R054_GLYSO (Putative lipid-transfer protein DIR1 OS=Glycine soja GN=glysoja_032913 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 1 

Query: 4  VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
          VA+ + LLL+++ G    Q+ICN+S PD+ +C  +V PPNPTPP+ QCC+ LSHA+L CL
Sbjct: 5  VALVVFLLLISVKG----QSICNVSLPDLMTCKPAVTPPNPTPPSQQCCSVLSHADLPCL 64

Query: 64 CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
          C+Y+ +     LGIDP LALQLP KCN+P+PP C
Sbjct: 65 CSYKNSPLLPSLGIDPKLALQLPAKCNLPHPPNC 94

[Close]
BLAST of CmaCh14G015080 vs. TAIR10
Match: AT5G48485.1 (AT5G48485.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 5.4e-15
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 4   VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
           V +A+ +++  ++    A  +C MS  ++  C  +V   NPT P+  CCTAL HA+  CL
Sbjct: 9   VMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACL 68

Query: 64  CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           C Y+ +      G+DP LA  LP +C + N PTC
Sbjct: 69  CGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]
BLAST of CmaCh14G015080 vs. TAIR10
Match: AT5G48490.1 (AT5G48490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.5e-14
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 1 

Query: 2   KAVAVALALLLMAMIGLGEAQTI--CNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHAN 61
           K VA+ + +++MA + +  +  I  C M+  ++  C  +V   NPT P+  CC AL HA+
Sbjct: 4   KKVAIMVIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTSPSLLCCNALKHAD 63

Query: 62  LTCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            TCLC Y+ +      G+DP LA  LP +C++ N PTC
Sbjct: 64  YTCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

[Close]
BLAST of CmaCh14G015080 vs. NCBI nr
Match: gi|700197968|gb|KGN53126.1| (hypothetical protein Csa_4G017140 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK VA+AL L+++  IG GEAQ+ICNM    +Y+C  SV PPNPTPPT QCC+AL+HA+L
Sbjct: 5   MKVVALALVLMVVNNIGFGEAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

[Close]
BLAST of CmaCh14G015080 vs. NCBI nr
Match: gi|821595415|ref|NP_001295798.1| (lipopolysaccharide-binding protein precursor [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-24
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK VA+AL L+++  IG G+AQ+ICNM    +Y+C  SV PPNPTPPT QCC+AL+HA+L
Sbjct: 5   MKVVALALVLMVVNNIGFGKAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

[Close]
BLAST of CmaCh14G015080 vs. NCBI nr
Match: gi|659107927|ref|XP_008453924.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 55/97 (56.70%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 1   MKAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANL 60
           MK V +AL L+++  IG GEAQ+ICNM    +Y+C  +V PPNPT PTAQCC AL  A+L
Sbjct: 5   MKVVVLALVLMVVNNIGFGEAQSICNMPIAGLYACRPAVTPPNPTAPTAQCCMALGQADL 64

Query: 61  TCLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
            C C Y+ +GA S  GIDPNLA+QLP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGIDPNLAMQLPKRCNISKSPNC 101

[Close]
BLAST of CmaCh14G015080 vs. NCBI nr
Match: gi|1012320727|gb|KYP33404.1| (hypothetical protein KK1_045738 [Cajanus cajan])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 

Query: 4   VAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLTCL 63
           V V + + L+  IG+ + QTICN+S  D   C SS+ PPNPTPP+  CC  +SHA+L CL
Sbjct: 7   VIVIVVMALVISIGITKGQTICNISLEDALKCKSSMTPPNPTPPSKDCCDVVSHADLPCL 66

Query: 64  CNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           C Y+ +     LGIDPNLALQLP KCNIPNPP C
Sbjct: 67  CPYKNSPLLPSLGIDPNLALQLPAKCNIPNPPKC 100

[Close]
BLAST of CmaCh14G015080 vs. NCBI nr
Match: gi|955391388|ref|XP_006606947.2| (PREDICTED: putative lipid-transfer protein DIR1 [Glycine max])

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-22
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 2   KAVAVALALLLMAMIGLGEAQTICNMSFPDIYSCSSSVIPPNPTPPTAQCCTALSHANLT 61
           K + V +AL++  ++   + Q+ICN+S PD+ +C  +V PPNPTPP+ QCC+ LSHA+L 
Sbjct: 8   KQMIVGVALVVFLLLISVKGQSICNVSLPDLMTCKPAVTPPNPTPPSQQCCSVLSHADLP 67

Query: 62  CLCNYQKAGAFSYLGIDPNLALQLPNKCNIPNPPTC 98
           CLC+Y+ +     LGIDP LALQLP KCN+P+PP C
Sbjct: 68  CLCSYKNSPLLPSLGIDPKLALQLPAKCNLPHPPNC 103

The following BLAST results are available for this feature:
BLAST of CmaCh14G015080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DIRL1_ARATH9.5e-1437.23Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1[more]
BLAST of CmaCh14G015080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ41_CUCSA1.1e-2456.70Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017140 PE=4 SV=1[more]
A0A0A1IXE5_CUCSA3.2e-2455.67Lipid binding/ Lipid transporter protein OS=Cucumis sativus GN=LBP PE=2 SV=1[more]
A0A151QT21_CAJCA1.0e-2256.38Uncharacterized protein OS=Cajanus cajan GN=KK1_045738 PE=4 SV=1[more]
K7N5J7_SOYBN3.0e-2252.08Uncharacterized protein OS=Glycine max GN=GLYMA_20G248700 PE=4 SV=1[more]
A0A0B2R054_GLYSO6.6e-2255.32Putative lipid-transfer protein DIR1 OS=Glycine soja GN=glysoja_032913 PE=4 SV=1[more]
BLAST of CmaCh14G015080 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48485.15.4e-1537.23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT5G48490.13.5e-1437.76 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
BLAST of CmaCh14G015080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197968|gb|KGN53126.1|1.6e-2456.70hypothetical protein Csa_4G017140 [Cucumis sativus][more]
gi|821595415|ref|NP_001295798.1|4.6e-2455.67lipopolysaccharide-binding protein precursor [Cucumis sativus][more]
gi|659107927|ref|XP_008453924.1|1.3e-2356.70PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo][more]
gi|1012320727|gb|KYP33404.1|1.5e-2256.38hypothetical protein KK1_045738 [Cajanus cajan][more]
gi|955391388|ref|XP_006606947.2|4.3e-2252.08PREDICTED: putative lipid-transfer protein DIR1 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G015080.1CmaCh14G015080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 10..97
score: 1.1
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 25..97
score: 1.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 25..96
score: 1.42
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 32..94
score: 2.
NoneNo IPR availablePANTHERPTHR33122FAMILY NOT NAMEDcoord: 1..97
score: 8.8
NoneNo IPR availablePANTHERPTHR33122:SF5SUBFAMILY NOT NAMEDcoord: 1..97
score: 8.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G015080Cucumber (Gy14) v2cgybcmaB485
CmaCh14G015080Melon (DHL92) v3.6.1cmamedB278
CmaCh14G015080Silver-seed gourdcarcmaB0972
CmaCh14G015080Silver-seed gourdcarcmaB1439
CmaCh14G015080Cucumber (Chinese Long) v3cmacucB0298
CmaCh14G015080Watermelon (97103) v2cmawmbB274
CmaCh14G015080Wax gourdcmawgoB0331
CmaCh14G015080Cucurbita maxima (Rimu)cmacmaB284
CmaCh14G015080Cucumber (Gy14) v1cgycmaB0193
CmaCh14G015080Cucurbita moschata (Rifu)cmacmoB245
CmaCh14G015080Cucurbita moschata (Rifu)cmacmoB271
CmaCh14G015080Wild cucumber (PI 183967)cmacpiB263
CmaCh14G015080Cucumber (Chinese Long) v2cmacuB260
CmaCh14G015080Melon (DHL92) v3.5.1cmameB244
CmaCh14G015080Watermelon (Charleston Gray)cmawcgB241
CmaCh14G015080Watermelon (97103) v1cmawmB237
CmaCh14G015080Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G015080Cucurbita pepo (Zucchini)cmacpeB292
CmaCh14G015080Bottle gourd (USVL1VR-Ls)cmalsiB254