CmaCh14G010110.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G010110.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cma_Chr14 : 5317101 .. 5318310 (-)
Sequence length	585

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTTAGTTCGATAAATTGAAAATTTAATGAATTGTTTTTTTATTTATTGAAATTTCTAGTATAGATAAACGACCGCGGGCCAAAGGACAAAACTCATCTTTCTTGAAAAATGGAAGGGAAGAAAAAGCCCCTTCATTAAAAGTTAGAAAGAGTCCTCTAAAGAAGGGTACAATCTAAACATTGATTCTTTTTTTCGCTATTTTTTTTGAACCGTATGCATCAAAAGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGCCGGAATAGCTATTTATAATACTATCCAATTTGTGAAACCATATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAAATTACCAAACGTCTAGCATTCCCTCACGCTCAGCGCCAATGAGTGTTTTTTTTAGACAAAAAGGAAAAACTATGTCTTCGCCATAGAAAATATGAATATTAAGTAATAATAGCATGGCATTTTGAATTCGATATGAGAATTTTTTTTCTTGTTTTTTTATCTAAACCATTAGGTTATGTCTCGAAAGAGTAAATATGAGATAAAAGACATTTACGATTTTAGCTGATTTACCGGAGGCCTCTTTCAGCGTCACAAACTTTTTTGTTTTCAGACGTAAAACACTTAAGAACAATATTTCTATTATAAAAGACTACGGAACCATCATAATATTTATTTTTAAATTATTAATAAATAAAGGTTCTAGGTCTCATAGATCCTCCATTTTCTATATCTTCGATGGAAGGTAAAAACGAATTCCATTTTGGAGCCGTATGCACTGCACAAAGGATGCATATACGGTTGTTAATCCTATCATGCGAGATAGAGAAAACCATTTACTAAATCAACAGGGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGGACAAACGGGAGAATTGATCTTGGAAGCGGGAGAACTACTGACGGTGCGTGAAACCATCACAAAGGTTTATGGACAAAGAACAGGCAAACCCGGTCTATTTACAACTAGCCAGATAATCCTCTTTTCCTAA

mRNA sequence

ATGAAAAATAAACGACCGCGGGCCAAAGGACAAAACTCATCTTTCTTGAAAAATGGAAGGGAAGAAAAAGCCCCTTCATTAAAAGTTAGAAAGAGTCCTCTAAAGAAGGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGCCGGAATAGCTATTTATAATACTATCCAATTTGTGAAACCATATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAAATTACCAAACGTCTAGCATTCCCTCACGCTCAGCGCCAATGAGTGGACAAACGGGAGAATTGATCTTGGAAGCGGGAGAACTACTGACGGTGCGTGAAACCATCACAAAGGTTTATGGACAAAGAACAGGCAAACCCGGTCTATTTACAACTAGCCAGATAATCCTCTTTTCCTAA

Coding sequence (CDS)

ATGAAAAATAAACGACCGCGGGCCAAAGGACAAAACTCATCTTTCTTGAAAAATGGAAGGGAAGAAAAAGCCCCTTCATTAAAAGTTAGAAAGAGTCCTCTAAAGAAGGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGCCGGAATAGCTATTTATAATACTATCCAATTTGTGAAACCATATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAAATTACCAAACGTCTAGCATTCCCTCACGCTCAGCGCCAATGAGTGGACAAACGGGAGAATTGATCTTGGAAGCGGGAGAACTACTGACGGTGCGTGAAACCATCACAAAGGTTTATGGACAAAGAACAGGCAAACCCGGTCTATTTACAACTAGCCAGATAATCCTCTTTTCCTAA

Protein sequence

MKNKRPRAKGQNSSFLKNGREEKAPSLKVRKSPLKKGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNYQTSSIPSRSAPMSGQTGELILEAGELLTVRETITKVYGQRTGKPGLFTTSQIILFS

Homology

[Close]

BLAST of CmaCh14G010110.1 vs. Swiss-Prot
Match: CLPP_SPIOL (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.5e-46
Identity = 96/141 (68.09%), Postives = 113/141 (80.14%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+ KD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSFILVGG   +  + P          S+    QTGE +LEA
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFLLEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RET+TKVYGQRTGKP
Sbjct: 145 EELLKLRETLTKVYGQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. Swiss-Prot
Match: CLPP_NICTO (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=clpP PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.2e-45
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSFILVGG   +  + P          S+    QTGE +LEA
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RET+T+VY QRTGKP
Sbjct: 145 EELLKLRETLTRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. Swiss-Prot
Match: CLPP_TOBAC (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.2e-45
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSFILVGG   +  + P          S+    QTGE +LEA
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RET+T+VY QRTGKP
Sbjct: 145 EELLKLRETLTRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. Swiss-Prot
Match: CLPP_NICSY (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.2e-45
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSFILVGG   +  + P          S+    QTGE +LEA
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RET+T+VY QRTGKP
Sbjct: 145 EELLKLRETLTRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. Swiss-Prot
Match: CLPP_EUCGG (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus globulus subsp. globulus GN=clpP PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.4e-45
Identity = 95/141 (67.38%), Postives = 113/141 (80.14%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIE++NKD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSF+LVGG   +  + P          S+    QTGE ILEA
Sbjct: 85  QFVQPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RETIT+VY QRTGKP
Sbjct: 145 EELLKLRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. TrEMBL
Match: H6SXE0_9POAL (ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Potarophytum riparium GN=clpP PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.0e-47
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGAR V KGY F+LINRLYR+RLLFLGQ+V+SEISNQ++GLM+YLSIED  +D YLFINS
Sbjct: 28  KGARMVSKGYYFVLINRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDATRDLYLFINS 87

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV P +HTICMGLAASMGSFILVGG   +  + P          
Sbjct: 88  PGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPA 147

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    Q GE ILEA ELL +RET+TKVY QRTG P
Sbjct: 148 SSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNP 183

[Close]

BLAST of CmaCh14G010110.1 vs. TrEMBL
Match: A0A109RTB8_9FABA (ATP-dependent Clp protease proteolytic subunit OS=Lespedeza capitata GN=clpP PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-46
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+NKD YLFINS
Sbjct: 10  KGACTALKEKNLILINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDNKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG V+ GIA+Y+T+QFV+P + T+CMGLAASMGSFIL GG   +  + P          
Sbjct: 70  PGGWVLPGIAVYDTMQFVQPDVQTVCMGLAASMGSFILAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+   GQTGE I+EA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEGQTGEFIVEAEELLKLRETITRVYMQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. TrEMBL
Match: A0A0K0LVR2_9FABA (ATP-dependent Clp protease proteolytic subunit OS=Psoralidium tenuiflorum GN=clpP PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ++ LM+YLSIEDENKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLLSLMVYLSIEDENKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + TICMGLAASMGSF+L GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. TrEMBL
Match: A0A0K0LVX8_9FABA (ATP-dependent Clp protease proteolytic subunit OS=Pediomelum digitatum GN=clpP PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ++ LM+YLSIEDENKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLLSLMVYLSIEDENKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + TICMGLAASMGSF+L GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. TrEMBL
Match: A0A0K0LX19_9FABA (ATP-dependent Clp protease proteolytic subunit OS=Pediomelum argophyllum GN=clpP PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ++ LM+YLSIEDENKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLLSLMVYLSIEDENKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + TICMGLAASMGSF+L GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. TAIR10
Match: ATCG00670.1 (ATCG00670.1 plastid-encoded CLP P)

HSP 1 Score: 167.5 bits (423), Expect = 7.9e-42
Identity = 89/143 (62.24%), Postives = 108/143 (75.52%), Query Frame = 1


Query: 49  LINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYN 108
           + NRLYR+RL FLGQ+V++EISNQ+I LMIYLSIE + KD YLFINSPGG VI+G+AIY+
Sbjct: 23  IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYD 82

Query: 109 TIQFVKPYIHTICMGLAASMGSFILVGG---------NYQTSSIPSRSAPMSGQTGELIL 168
           T+QFV+P + TICMGLAAS+ SFILVGG         + +       S+    QTGE IL
Sbjct: 83  TMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEAQTGEFIL 142

Query: 169 EAGELLTVRETITKVYGQRTGKP 183
           EA ELL +RETIT+VY QRTGKP
Sbjct: 143 EAEELLKLRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. TAIR10
Match: AT1G12410.1 (AT1G12410.1 CLP protease proteolytic subunit 2)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-20
Identity = 46/140 (32.86%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           N LYR+R++F+GQ+++ E SNQI+  M+YL   D+++  Y+++N PGG +   +AIY+T+
Sbjct: 92  NALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTM 151

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGN--------YQTSSIPSRSAPMSGQTGELILEAG 170
           + +K  + T C+GLA ++  F+L  G             ++ S +    GQ  ++  EA 
Sbjct: 152 KSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAK 211

Query: 171 ELLTVRETITKVYGQRTGKP 183
           EL  +R+ +     + TG+P
Sbjct: 212 ELSRIRDYLFNELAKNTGQP 231

[Close]

BLAST of CmaCh14G010110.1 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           N L RQR++FLG  V+   ++ +I  ++ L  ED  +D  LFINSPGG + AG+ IY+ +
Sbjct: 88  NMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAM 147

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNYQTSSIPSRSAPM--------SGQTGELILEAG 170
           +  K  + T+C+GLAASMG+F+L  G+         S  M         G+  E+ +   
Sbjct: 148 KQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIR 207

Query: 171 ELLTVRETITKVYGQRTGKP 183
           E++  +  + K++ + TGKP
Sbjct: 208 EMMYHKIKLNKIFSRITGKP 227

[Close]

BLAST of CmaCh14G010110.1 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-19
Identity = 45/142 (31.69%), Postives = 87/142 (61.27%), Query Frame = 1


Query: 49  LINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYN 108
           + +RL ++R++ +   +  + S+ ++  ++YL  E+ +K  ++++NSPGG V AG+AIY+
Sbjct: 49  IFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYD 108

Query: 109 TIQFVKPYIHTICMGLAASMGSFIL-VGGNYQTSSIPSR-------SAPMSGQTGELILE 168
           T+Q+++  I TIC+G AASM S +L  G   Q  S+P+        S   SGQ  ++ + 
Sbjct: 109 TMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIH 168

Query: 169 AGELLTVRETITKVYGQRTGKP 183
             +++ V + + ++Y + TG+P
Sbjct: 169 TKQIVRVWDALNELYVKHTGQP 190

[Close]

BLAST of CmaCh14G010110.1 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 46/141 (32.62%), Postives = 87/141 (61.70%), Query Frame = 1


Query: 49  LINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYN 108
           +I++L++ R++  G  V+ +++N I+  ++YL   D  KD  +++NSPGG V AG+AI++
Sbjct: 115 IISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFD 174

Query: 109 TIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIPSR----SAPMSGQTG---ELILE 168
           T++ ++P + T+C+GLAASMG+F+L  G   +  S+P+       P+ G  G   ++ ++
Sbjct: 175 TMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQ 234

Query: 169 AGELLTVRETITKVYGQRTGK 182
           A E+L  +  +       TG+
Sbjct: 235 ANEMLHHKANLNGYLAYHTGQ 255

[Close]

BLAST of CmaCh14G010110.1 vs. NCBI nr
Match: gi|374411904|gb|AEZ48936.1| (clp protease proteolytic subunit, partial (plastid) [Potarophytum riparium])

HSP 1 Score: 195.3 bits (495), Expect = 1.0e-46
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGAR V KGY F+LINRLYR+RLLFLGQ+V+SEISNQ++GLM+YLSIED  +D YLFINS
Sbjct: 28  KGARMVSKGYYFVLINRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDATRDLYLFINS 87

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV P +HTICMGLAASMGSFILVGG   +  + P          
Sbjct: 88  PGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPA 147

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    Q GE ILEA ELL +RET+TKVY QRTG P
Sbjct: 148 SSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNP 183

[Close]

BLAST of CmaCh14G010110.1 vs. NCBI nr
Match: gi|984910861|gb|AMC30882.1| (ATP-dependent Clp protease proteolytic subunit (chloroplast) [Lespedeza capitata])

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-46
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+NKD YLFINS
Sbjct: 10  KGACTALKEKNLILINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDNKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG V+ GIA+Y+T+QFV+P + T+CMGLAASMGSFIL GG   +  + P          
Sbjct: 70  PGGWVLPGIAVYDTMQFVQPDVQTVCMGLAASMGSFILAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+   GQTGE I+EA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEGQTGEFIVEAEELLKLRETITRVYMQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. NCBI nr
Match: gi|748991897|gb|AJE72327.1| (ATP-dependent Clp protease proteolytic subunit (plastid) [Psoralidium tenuiflorum])

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ++ LM+YLSIEDENKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLLSLMVYLSIEDENKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + TICMGLAASMGSF+L GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110.1 vs. NCBI nr
Match: gi|944542108|ref|YP_009176028.1| (clp protease proteolytic subunit (chloroplast) [Ficus racemosa])

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-45
Identity = 104/160 (65.00%), Postives = 120/160 (75.00%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           K A TV KGYNFI INRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+ KD YLFINS
Sbjct: 76  KDACTVPKGYNFISINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINS 135

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP---------- 155
           PGG VI G+ IY+T+QFV+P + TICMGLAASMGSFILVGG   +  + P          
Sbjct: 136 PGGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHAWRQIIRVM 195

Query: 156 ---SRSAPMSGQTGELILEAGELLTVRETITKVYGQRTGK 182
                S+    QTGE ILEA ELL +RETIT+VY QRTGK
Sbjct: 196 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYAQRTGK 235

[Close]

BLAST of CmaCh14G010110.1 vs. NCBI nr
Match: gi|984910849|gb|AMC30876.1| (ATP-dependent Clp protease proteolytic subunit (chloroplast) [Desmodium illinoense])

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+NKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDNKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + T+CMGLAASMGSFIL GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFILAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRT KP
Sbjct: 130 SSFYEAQTGEFILEAEELLKLRETITRVYVQRTSKP 165

The following BLAST results are available for this feature:

BLAST of CmaCh14G010110.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP_SPIOL	8.5e-46	68.09	ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3...	[more]
CLPP_NICTO	7.2e-45	67.38	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=c...	[more]
CLPP_TOBAC	7.2e-45	67.38	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2...	[more]
CLPP_NICSY	7.2e-45	67.38	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP P...	[more]
CLPP_EUCGG	9.4e-45	67.38	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus globulus subsp. glo...	[more]

BLAST of CmaCh14G010110.1 vs. TrEMBL


Match Name	E-value	Identity	Description
H6SXE0_9POAL	7.0e-47	66.67	ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Potarophytum ripari...	[more]
A0A109RTB8_9FABA	1.6e-46	66.03	ATP-dependent Clp protease proteolytic subunit OS=Lespedeza capitata GN=clpP PE=...	[more]
A0A0K0LVR2_9FABA	1.0e-45	66.67	ATP-dependent Clp protease proteolytic subunit OS=Psoralidium tenuiflorum GN=clp...	[more]
A0A0K0LVX8_9FABA	1.0e-45	66.67	ATP-dependent Clp protease proteolytic subunit OS=Pediomelum digitatum GN=clpP P...	[more]
A0A0K0LX19_9FABA	1.0e-45	66.67	ATP-dependent Clp protease proteolytic subunit OS=Pediomelum argophyllum GN=clpP...	[more]

BLAST of CmaCh14G010110.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00670.1	7.9e-42	62.24	ATCG00670.1 plastid-encoded CLP P	[more]
AT1G12410.1	6.5e-20	32.86	CLP protease proteolytic subunit 2	[more]
AT1G66670.1	1.4e-19	35.00	CLP protease proteolytic subunit 3	[more]
AT5G23140.1	2.5e-19	31.69	nuclear-encoded CLP protease P7	[more]
AT1G02560.1	2.1e-18	32.62	nuclear encoded CLP protease 5	[more]

BLAST of CmaCh14G010110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|374411904\|gb\|AEZ48936.1\|	1.0e-46	66.67	clp protease proteolytic subunit, partial (plastid) [Potarophytum riparium]	[more]
gi\|984910861\|gb\|AMC30882.1\|	2.2e-46	66.03	ATP-dependent Clp protease proteolytic subunit (chloroplast) [Lespedeza capitata...	[more]
gi\|748991897\|gb\|AJE72327.1\|	1.4e-45	66.67	ATP-dependent Clp protease proteolytic subunit (plastid) [Psoralidium tenuifloru...	[more]
gi\|944542108\|ref\|YP_009176028.1\|	2.5e-45	65.00	clp protease proteolytic subunit (chloroplast) [Ficus racemosa]	[more]
gi\|984910849\|gb\|AMC30876.1\|	2.5e-45	66.67	ATP-dependent Clp protease proteolytic subunit (chloroplast) [Desmodium illinoen...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001907	ClpP
IPR018215	ClpP_Ser_AS
IPR023562	ClpP/TepA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh14G010110	CmaCh14G010110	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh14G010110.1	CmaCh14G010110.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G010110.1.CDS.4	CmaCh14G010110.1.CDS.4	CDS
CmaCh14G010110.1.CDS.3	CmaCh14G010110.1.CDS.3	CDS
CmaCh14G010110.1.CDS.2	CmaCh14G010110.1.CDS.2	CDS
CmaCh14G010110.1.CDS.1	CmaCh14G010110.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G010110.1.exon.4	CmaCh14G010110.1.exon.4	exon
CmaCh14G010110.1.exon.3	CmaCh14G010110.1.exon.3	exon
CmaCh14G010110.1.exon.2	CmaCh14G010110.1.exon.2	exon
CmaCh14G010110.1.exon.1	CmaCh14G010110.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 48..63 score: 1.2E-24coord: 88..108 score: 1.2E-24coord: 119..136 score: 1.2
IPR018215	ClpP, Ser active site	PROSITE	PS00381	CLP_PROTEASE_SER	coord: 119..130 scor
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 49..182 score: 9.0
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 49..182 score: 1.9
None	No IPR available	PANTHER	PTHR10381:SF19	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1	coord: 49..182 score: 9.0